Wall clock time and date at job start Mon Mar 30 2020 04:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.36648 * 2 1 4 4 C 1.54377 * 110.32613 * 122.18311 * 2 1 3 5 5 N 1.48567 * 104.59135 * 142.75077 * 4 2 1 6 6 C 1.46906 * 110.99542 * 200.95863 * 5 4 2 7 7 C 1.48558 * 104.22309 * 320.51385 * 5 4 2 8 8 C 1.54261 * 110.32293 * 237.82224 * 2 1 3 9 9 H 1.09006 * 110.32417 * 0.10088 * 8 2 1 10 10 N 1.46899 * 110.32311 * 122.20539 * 8 2 1 11 11 C 1.46908 * 110.99757 * 204.99980 * 10 8 2 12 12 C 1.52999 * 109.46776 * 179.97438 * 11 10 8 13 13 O 1.42898 * 109.47174 * 65.00267 * 12 11 10 14 14 C 1.42906 * 113.99824 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46706 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.09003 * 109.46574 * 182.17943 * 1 2 3 24 24 H 1.08998 * 109.46799 * 302.17795 * 1 2 3 25 25 H 1.09004 * 109.47410 * 62.18244 * 1 2 3 26 26 H 1.08998 * 110.41329 * 261.52618 * 4 2 1 27 27 H 1.08992 * 110.41198 * 23.85452 * 4 2 1 28 28 H 1.09005 * 109.46785 * 59.87865 * 6 5 4 29 29 H 1.08999 * 109.46765 * 179.87233 * 6 5 4 30 30 H 1.09001 * 109.47381 * 299.87395 * 6 5 4 31 31 H 1.09004 * 110.41467 * 280.71008 * 7 5 4 32 32 H 1.09002 * 110.41365 * 158.26392 * 7 5 4 33 33 H 1.00895 * 111.00394 * 328.94928 * 10 8 2 34 34 H 1.09003 * 109.47076 * 60.00230 * 11 10 8 35 35 H 1.08993 * 109.47323 * 299.99685 * 11 10 8 36 36 H 1.09002 * 109.47561 * 304.99666 * 12 11 10 37 37 H 1.09008 * 109.47150 * 184.99785 * 12 11 10 38 38 H 1.09000 * 109.47141 * 60.00107 * 14 13 12 39 39 H 1.08993 * 109.47732 * 299.99746 * 14 13 12 40 40 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0663 -0.7711 1.2252 5 7 3.2695 -1.4828 0.7223 6 6 3.6070 -2.6217 1.5866 7 6 2.8807 -1.9421 -0.6360 8 6 2.0658 -0.7704 -1.2244 9 1 1.2387 -1.1470 -1.8263 10 7 2.9314 0.0972 -2.0343 11 6 2.9708 -0.3550 -3.4315 12 6 3.8797 0.5713 -4.2418 13 8 5.2229 0.4542 -3.7686 14 6 6.1580 1.2824 -4.4628 15 6 7.5347 1.0798 -3.8840 16 1 7.6809 0.3876 -3.0680 17 6 8.6074 1.7783 -4.3963 18 7 9.8088 1.6011 -3.8915 19 14 8.3544 2.9761 -5.8071 20 1 8.5207 2.2621 -7.0985 21 1 6.9864 3.5489 -5.7307 22 1 9.3548 4.0695 -5.7136 23 1 -0.3632 -1.0270 0.0391 24 1 -0.3633 0.5473 0.8698 25 1 -0.3634 0.4796 -0.9089 26 1 2.3395 -0.0779 2.0208 27 1 1.3222 -1.4834 1.5815 28 1 2.7703 -3.3199 1.6108 29 1 4.4900 -3.1262 1.1944 30 1 3.8111 -2.2640 2.5958 31 1 2.2648 -2.8392 -0.5722 32 1 3.7671 -2.1307 -1.2417 33 1 2.6363 1.0601 -1.9741 34 1 1.9642 -0.3324 -3.8492 35 1 3.3587 -1.3727 -3.4732 36 1 3.5428 1.6017 -4.1279 37 1 3.8395 0.2902 -5.2943 38 1 5.8686 2.3276 -4.3537 39 1 6.1650 1.0157 -5.5196 40 1 10.5636 2.0922 -4.2521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722255464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:45 Heat of formation + Delta-G solvation = -38.428415 kcal Electronic energy + Delta-G solvation = -17763.771752 eV Core-core repulsion = 14999.572635 eV Total energy + Delta-G solvation = -2764.199118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45036 -37.03300 -35.02733 -33.06527 -32.44207 -29.71706 -28.00659 -27.06771 -26.60644 -23.74739 -21.96900 -21.71141 -20.66123 -20.02014 -16.83595 -16.47179 -15.75088 -15.49420 -15.08573 -14.91892 -14.40681 -14.08059 -13.88192 -13.48832 -13.16951 -12.93897 -12.64427 -12.48477 -12.21277 -12.02690 -11.74361 -11.44596 -11.35635 -11.12918 -10.92341 -10.86968 -10.74141 -10.62666 -10.30367 -9.79078 -9.07388 -8.74745 -8.39564 -8.36274 -8.10832 -6.02819 -4.00679 3.29726 3.36411 3.38346 4.03136 4.25440 4.42618 4.46543 4.55533 4.74247 4.96497 5.15324 5.28124 5.28316 5.28549 5.35139 5.38631 5.47973 5.50441 5.58696 5.61077 5.71039 5.77584 5.87683 5.90055 5.91023 5.99011 6.08368 6.18836 6.26742 6.68517 6.83354 7.05397 7.09267 7.30090 7.60597 7.69565 8.15177 8.78358 9.11844 9.57102 11.10526 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.004679 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.143771 B = 5983.343564 C = 6527.818629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.039 3.961 5 N -0.502 5.502 6 C 0.014 3.986 7 C 0.043 3.957 8 C 0.088 3.912 9 H 0.048 0.952 10 N -0.660 5.660 11 C 0.065 3.935 12 C 0.061 3.939 13 O -0.362 6.362 14 C 0.167 3.833 15 C -0.513 4.513 16 H 0.084 0.916 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.267 1.267 22 H -0.283 1.283 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.094 0.906 33 H 0.340 0.660 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.040 0.960 38 H 0.001 0.999 39 H -0.005 1.005 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 -4.958 6.547 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.090 4.090 5 N -0.225 5.225 6 C -0.135 4.135 7 C -0.086 4.086 8 C -0.022 4.022 9 H 0.066 0.934 10 N -0.292 5.292 11 C -0.064 4.064 12 C -0.017 4.017 13 O -0.281 6.281 14 C 0.092 3.908 15 C -0.551 4.551 16 H 0.102 0.898 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.192 1.192 22 H -0.209 1.209 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.164 -5.014 6.850 20.960 hybrid contribution -1.606 0.541 -1.267 2.116 sum -20.770 -4.473 5.583 21.967 Atomic orbital electron populations 1.21868 0.94700 1.01683 1.01902 1.22134 0.94902 1.00640 0.94362 0.89303 1.23152 0.91333 0.97293 0.97184 1.65355 1.32500 1.22626 1.02032 1.22517 1.00465 0.92532 0.97957 1.23217 0.99769 0.94731 0.90879 1.22316 0.92562 0.93826 0.93533 0.93416 1.60332 1.54521 1.05319 1.09068 1.22023 0.96179 1.00375 0.87859 1.22302 0.86142 0.97400 0.95836 1.88042 1.14338 1.65928 1.59802 1.20584 0.89419 0.89360 0.91445 1.20919 0.88908 1.25742 1.19529 0.89840 1.24768 0.94870 0.96592 0.96803 1.69886 0.99227 1.42388 1.42112 0.86859 0.78403 0.81443 0.83069 1.20057 1.19189 1.20861 0.92795 0.92300 0.92542 0.90255 0.94194 0.95964 0.90996 0.91461 0.94544 0.88761 0.84099 0.94965 0.90362 0.94705 0.94184 0.98174 0.98780 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.92 37.16 0.33 -0.82 16 2 C -0.10 -1.06 3.33 -89.24 -0.30 -1.36 16 3 H 0.09 1.01 7.52 -51.93 -0.39 0.62 16 4 C 0.04 0.42 6.04 -2.18 -0.01 0.41 16 5 N -0.50 -6.79 5.66 -238.22 -1.35 -8.13 16 6 C 0.01 0.16 9.53 60.07 0.57 0.73 16 7 C 0.04 0.56 6.19 -2.18 -0.01 0.55 16 8 C 0.09 1.07 3.04 -66.33 -0.20 0.87 16 9 H 0.05 0.53 7.38 -51.93 -0.38 0.14 16 10 N -0.66 -9.76 6.24 -105.26 -0.66 -10.42 16 11 C 0.06 0.94 5.92 -3.82 -0.02 0.92 16 12 C 0.06 1.09 6.22 37.16 0.23 1.32 16 13 O -0.36 -8.77 10.27 -35.23 -0.36 -9.13 16 14 C 0.17 4.41 4.76 36.01 0.17 4.58 16 15 C -0.51 -15.80 9.99 -34.44 -0.34 -16.14 16 16 H 0.08 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 18 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 19 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H 0.05 0.41 8.10 -51.93 -0.42 -0.01 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.02 0.22 7.98 -51.93 -0.41 -0.20 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.42 7.91 -51.93 -0.41 0.01 16 32 H 0.09 1.49 8.02 -51.93 -0.42 1.07 16 33 H 0.34 4.69 8.04 -39.29 -0.32 4.37 16 34 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 35 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.00 0.02 7.20 -51.93 -0.37 -0.36 16 39 H -0.01 -0.14 7.57 -51.93 -0.39 -0.53 16 40 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -33.41 320.68 -8.42 -41.83 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.31 Total: -1.69 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 0.32 Total: -6.89 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -1.23 Total: -46.19 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.36 Total: -9.13 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.41 -8.42 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.398 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds