Wall clock time and date at job start Mon Mar 30 2020 04:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.36648 * 2 1 4 4 C 1.54377 * 110.32613 * 122.18311 * 2 1 3 5 5 N 1.48567 * 104.59135 * 142.75077 * 4 2 1 6 6 C 1.46906 * 110.99542 * 200.95863 * 5 4 2 7 7 C 1.48558 * 104.22309 * 320.51385 * 5 4 2 8 8 C 1.54261 * 110.32293 * 237.82224 * 2 1 3 9 9 H 1.09006 * 110.32417 * 0.10088 * 8 2 1 10 10 N 1.46899 * 110.32311 * 122.20539 * 8 2 1 11 11 C 1.46908 * 110.99757 * 204.99980 * 10 8 2 12 12 C 1.52999 * 109.46776 * 179.97438 * 11 10 8 13 13 O 1.42898 * 109.47174 * 65.00267 * 12 11 10 14 14 C 1.42906 * 113.99824 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46706 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.09003 * 109.46574 * 182.17943 * 1 2 3 24 24 H 1.08998 * 109.46799 * 302.17795 * 1 2 3 25 25 H 1.09004 * 109.47410 * 62.18244 * 1 2 3 26 26 H 1.08998 * 110.41329 * 261.52618 * 4 2 1 27 27 H 1.08992 * 110.41198 * 23.85452 * 4 2 1 28 28 H 1.09005 * 109.46785 * 59.87865 * 6 5 4 29 29 H 1.08999 * 109.46765 * 179.87233 * 6 5 4 30 30 H 1.09001 * 109.47381 * 299.87395 * 6 5 4 31 31 H 1.09004 * 110.41467 * 280.71008 * 7 5 4 32 32 H 1.09002 * 110.41365 * 158.26392 * 7 5 4 33 33 H 1.00895 * 111.00394 * 328.94928 * 10 8 2 34 34 H 1.09003 * 109.47076 * 60.00230 * 11 10 8 35 35 H 1.08993 * 109.47323 * 299.99685 * 11 10 8 36 36 H 1.09002 * 109.47561 * 304.99666 * 12 11 10 37 37 H 1.09008 * 109.47150 * 184.99785 * 12 11 10 38 38 H 1.09000 * 109.47141 * 60.00107 * 14 13 12 39 39 H 1.08993 * 109.47732 * 299.99746 * 14 13 12 40 40 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0663 -0.7711 1.2252 5 7 3.2695 -1.4828 0.7223 6 6 3.6070 -2.6217 1.5866 7 6 2.8807 -1.9421 -0.6360 8 6 2.0658 -0.7704 -1.2244 9 1 1.2387 -1.1470 -1.8263 10 7 2.9314 0.0972 -2.0343 11 6 2.9708 -0.3550 -3.4315 12 6 3.8797 0.5713 -4.2418 13 8 5.2229 0.4542 -3.7686 14 6 6.1580 1.2824 -4.4628 15 6 7.5347 1.0798 -3.8840 16 1 7.6809 0.3876 -3.0680 17 6 8.6074 1.7783 -4.3963 18 7 9.8088 1.6011 -3.8915 19 14 8.3544 2.9761 -5.8071 20 1 8.5207 2.2621 -7.0985 21 1 6.9864 3.5489 -5.7307 22 1 9.3548 4.0695 -5.7136 23 1 -0.3632 -1.0270 0.0391 24 1 -0.3633 0.5473 0.8698 25 1 -0.3634 0.4796 -0.9089 26 1 2.3395 -0.0779 2.0208 27 1 1.3222 -1.4834 1.5815 28 1 2.7703 -3.3199 1.6108 29 1 4.4900 -3.1262 1.1944 30 1 3.8111 -2.2640 2.5958 31 1 2.2648 -2.8392 -0.5722 32 1 3.7671 -2.1307 -1.2417 33 1 2.6363 1.0601 -1.9741 34 1 1.9642 -0.3324 -3.8492 35 1 3.3587 -1.3727 -3.4732 36 1 3.5428 1.6017 -4.1279 37 1 3.8395 0.2902 -5.2943 38 1 5.8686 2.3276 -4.3537 39 1 6.1650 1.0157 -5.5196 40 1 10.5636 2.0922 -4.2521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722255464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:44 Heat of formation + Delta-G solvation = -65.247400 kcal Electronic energy + Delta-G solvation = -17764.934711 eV Core-core repulsion = 14999.572635 eV Total energy + Delta-G solvation = -2765.362076 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39658 -38.69252 -36.25561 -34.82183 -33.85336 -31.07538 -29.70657 -28.20041 -27.67559 -24.69500 -23.92975 -23.10811 -21.68887 -20.93113 -19.02971 -17.64393 -17.36422 -16.59951 -16.46085 -16.39573 -15.77653 -15.27006 -15.14086 -14.68938 -14.64794 -14.17016 -13.90090 -13.69341 -13.32558 -13.20915 -12.99560 -12.83872 -12.75549 -12.39185 -12.24932 -12.03126 -11.93888 -11.80831 -11.63993 -11.51414 -11.27752 -10.90094 -10.27202 -9.33923 -9.16653 -8.34944 -6.42590 1.33433 1.37634 1.48580 2.31297 2.97397 3.10576 3.16608 3.25818 3.60338 3.67977 4.15795 4.26208 4.29950 4.31648 4.37284 4.49600 4.52612 4.57013 4.58978 4.59779 4.66524 4.70654 4.78983 4.85744 4.96247 4.97366 5.01005 5.08186 5.10920 5.24564 5.35640 5.47226 5.88312 5.98638 6.14214 6.28713 6.56623 6.62315 6.85393 7.22254 8.82855 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029493 B = 0.004679 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.143771 B = 5983.343564 C = 6527.818629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.077 0.923 4 C 0.040 3.960 5 N -0.537 5.537 6 C 0.015 3.985 7 C 0.043 3.957 8 C 0.091 3.909 9 H 0.067 0.933 10 N -0.688 5.688 11 C 0.073 3.927 12 C 0.051 3.949 13 O -0.395 6.395 14 C 0.179 3.821 15 C -0.544 4.544 16 H 0.025 0.975 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.960 3.040 20 H -0.258 1.258 21 H -0.246 1.246 22 H -0.273 1.273 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.344 0.656 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.170 -3.891 5.247 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.088 4.088 5 N -0.261 5.261 6 C -0.133 4.133 7 C -0.086 4.086 8 C -0.019 4.019 9 H 0.085 0.915 10 N -0.321 5.321 11 C -0.056 4.056 12 C -0.026 4.026 13 O -0.314 6.314 14 C 0.103 3.897 15 C -0.582 4.582 16 H 0.043 0.957 17 C -0.187 4.187 18 N -0.585 5.585 19 Si 0.781 3.219 20 H -0.183 1.183 21 H -0.169 1.169 22 H -0.198 1.198 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.876 -3.965 5.565 22.919 hybrid contribution -0.743 0.117 -0.747 1.060 sum -22.619 -3.848 4.819 23.445 Atomic orbital electron populations 1.21810 0.92330 1.02442 1.02768 1.22114 0.96721 0.99527 0.93236 0.90484 1.23194 0.90813 0.97444 0.97352 1.65290 1.34335 1.23894 1.02608 1.22508 1.00595 0.92359 0.97855 1.23152 0.98673 0.96152 0.90632 1.22359 0.92378 0.93212 0.93971 0.91494 1.60264 1.56226 1.06085 1.09567 1.21953 0.97170 0.98665 0.87828 1.22701 0.83300 0.99219 0.97380 1.87998 1.17100 1.65749 1.60547 1.20280 0.87635 0.90042 0.91703 1.21188 0.92397 1.25604 1.18965 0.95705 1.25891 0.93951 0.98622 1.00208 1.70054 1.00578 1.43744 1.44100 0.85551 0.79566 0.78332 0.78494 1.18254 1.16905 1.19803 0.92053 0.91245 0.91895 0.90371 0.92404 0.94235 0.92277 0.90669 0.92752 0.92436 0.83639 0.91025 0.91759 0.93340 0.92438 0.97329 0.97266 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.92 71.98 0.64 -1.14 16 2 C -0.10 -1.88 3.33 -9.90 -0.03 -1.91 16 3 H 0.08 1.68 7.52 -2.38 -0.02 1.66 16 4 C 0.04 0.82 6.04 86.45 0.52 1.34 16 5 N -0.54 -14.55 5.66 -907.60 -5.14 -19.68 16 6 C 0.02 0.34 9.53 127.69 1.22 1.56 16 7 C 0.04 1.13 6.19 86.45 0.54 1.66 16 8 C 0.09 2.09 3.04 45.81 0.14 2.23 16 9 H 0.07 1.29 7.38 -2.38 -0.02 1.27 16 10 N -0.69 -19.90 6.24 -486.93 -3.04 -22.94 16 11 C 0.07 2.02 5.92 86.30 0.51 2.53 16 12 C 0.05 1.74 6.22 71.98 0.45 2.19 16 13 O -0.39 -19.29 10.27 -148.98 -1.53 -20.82 16 14 C 0.18 9.39 4.76 71.24 0.34 9.73 16 15 C -0.54 -34.70 9.99 25.60 0.26 -34.44 16 16 H 0.02 1.80 8.06 -2.91 -0.02 1.78 16 17 C 0.01 0.66 5.47 84.66 0.46 1.12 16 18 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 19 Si 0.96 44.56 27.47 68.60 1.88 46.45 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 0.98 7.66 -2.39 -0.02 0.97 16 28 H 0.04 0.73 7.98 -2.38 -0.02 0.71 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.20 7.91 -2.38 -0.02 1.18 16 32 H 0.06 1.92 8.02 -2.39 -0.02 1.90 16 33 H 0.34 9.16 8.04 -89.70 -0.72 8.43 16 34 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 35 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 39 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 40 H 0.27 16.19 8.31 -92.70 -0.77 15.41 16 Total: -1.00 -75.41 320.68 -2.27 -77.68 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.21 Total: 15.62 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 5.04 Total: -15.13 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -7.87 Total: -103.78 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.53 Total: -20.82 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -75.41 -2.27 -77.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.432 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds