Wall clock time and date at job start Mon Mar 30 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50703 * 109.47267 * 239.99513 * 2 1 3 5 5 H 1.08000 * 119.99818 * 240.00423 * 4 2 1 6 6 C 1.37874 * 119.99823 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00231 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47269 * 60.00396 * 8 6 4 10 10 H 1.48500 * 109.47066 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47369 * 300.00093 * 8 6 4 12 12 N 1.46899 * 109.47018 * 119.99925 * 2 1 3 13 13 C 1.46897 * 111.00544 * 73.53018 * 12 2 1 14 14 C 1.46901 * 110.99983 * 197.48990 * 12 2 1 15 15 C 1.53001 * 109.54676 * 56.58781 * 14 12 2 16 16 N 1.46895 * 109.47230 * 54.01549 * 15 14 12 17 17 C 1.53195 * 109.53946 * 296.32149 * 14 12 2 18 18 C 1.53093 * 109.15194 * 183.16006 * 17 14 12 19 19 O 1.42895 * 109.42611 * 57.60454 * 18 17 14 20 20 C 1.42907 * 114.09986 * 298.83786 * 19 18 17 21 21 C 1.53090 * 109.41072 * 61.15827 * 20 19 18 22 22 H 1.09000 * 109.47267 * 294.21125 * 1 2 3 23 23 H 1.09001 * 109.46864 * 54.20808 * 1 2 3 24 24 H 1.08997 * 109.47312 * 174.20591 * 1 2 3 25 25 H 0.97002 * 120.00335 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47476 * 183.95524 * 13 12 2 27 27 H 1.09000 * 109.47058 * 303.96183 * 13 12 2 28 28 H 1.09003 * 109.46664 * 63.95429 * 13 12 2 29 29 H 1.08996 * 109.46944 * 174.01723 * 15 14 12 30 30 H 1.08998 * 109.46844 * 294.01901 * 15 14 12 31 31 H 1.00902 * 111.00459 * 56.04823 * 16 15 14 32 32 H 1.00897 * 111.00288 * 180.02562 * 16 15 14 33 33 H 1.09010 * 109.53861 * 63.25421 * 17 14 12 34 34 H 1.09004 * 109.52567 * 303.05882 * 17 14 12 35 35 H 1.09001 * 109.48145 * 297.61451 * 18 17 14 36 36 H 1.09004 * 109.48122 * 177.59551 * 18 17 14 37 37 H 1.08998 * 109.48090 * 181.13912 * 20 19 18 38 38 H 1.08996 * 109.47756 * 301.16302 * 20 19 18 39 39 H 1.08994 * 109.53033 * 62.30052 * 21 20 19 40 40 H 1.09009 * 109.52199 * 182.49002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2203 11 1 3.8076 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1994 13 6 1.8286 -2.1444 1.0841 14 6 3.4283 -0.3657 1.4578 15 6 3.5870 1.1507 1.5854 16 7 2.6545 1.6569 2.6012 17 6 4.2934 -0.8779 0.3019 18 6 5.7662 -0.6032 0.6168 19 8 6.1133 -1.2318 1.8523 20 6 5.3695 -0.7584 2.9769 21 6 3.8807 -1.0394 2.7571 22 1 -0.3634 0.4214 0.9373 23 1 -0.3633 0.6010 -0.8336 24 1 -0.3634 -1.0224 -0.1037 25 1 0.7095 1.1615 -3.4845 26 1 2.1345 -2.6261 2.0128 27 1 0.7770 -2.3584 0.8929 28 1 2.4325 -2.5260 0.2608 29 1 4.6094 1.3854 1.8815 30 1 3.3695 1.6207 0.6263 31 1 2.7931 1.1893 3.4845 32 1 2.7396 2.6570 2.7040 33 1 4.0154 -0.3627 -0.6177 34 1 4.1409 -1.9503 0.1800 35 1 5.9262 0.4719 0.6984 36 1 6.3897 -1.0038 -0.1826 37 1 5.7070 -1.2709 3.8777 38 1 5.5243 0.3146 3.0895 39 1 3.7197 -2.1149 2.6849 40 1 3.3072 -0.6396 3.5934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725053210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:42 Heat of formation + Delta-G solvation = -22.935270 kcal Electronic energy + Delta-G solvation = -19857.399635 eV Core-core repulsion = 17093.872350 eV Total energy + Delta-G solvation = -2763.527285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -39.98452 -36.86833 -34.10341 -32.45755 -30.94856 -30.73074 -28.34997 -26.14412 -25.26722 -23.42559 -23.19811 -22.56012 -19.72885 -17.59705 -16.36126 -16.12864 -15.75666 -15.53867 -14.78569 -14.57989 -14.23720 -13.74125 -13.38357 -13.18664 -12.82756 -12.55953 -11.92292 -11.73072 -11.65387 -11.21476 -11.03966 -10.91218 -10.79083 -10.63637 -10.45375 -10.29103 -10.24151 -9.92622 -9.67126 -9.40808 -9.06167 -8.72039 -8.30957 -7.97390 -6.92166 -5.94389 -4.03689 3.27786 3.33870 3.36519 4.19968 4.41305 4.86998 5.18341 5.21454 5.30156 5.31449 5.46065 5.48121 5.64132 5.75372 5.89408 5.94800 6.02506 6.13899 6.37084 6.39654 6.40643 6.55054 6.72009 6.75084 6.94055 7.12568 7.13926 7.27881 7.40906 7.54578 7.63750 7.72025 7.82874 7.96745 8.12168 8.27576 8.45064 8.61608 9.06772 9.60182 11.05255 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.010031 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.371310 B = 2790.593414 C = 3286.101284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.209 3.791 3 H 0.047 0.953 4 C -0.545 4.545 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.880 3.120 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.509 5.509 13 C 0.029 3.971 14 C 0.129 3.871 15 C 0.073 3.927 16 N -0.825 5.825 17 C -0.188 4.188 18 C 0.058 3.942 19 O -0.391 6.391 20 C 0.062 3.938 21 C -0.147 4.147 22 H 0.016 0.984 23 H 0.075 0.925 24 H 0.020 0.980 25 H 0.260 0.740 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.082 0.918 31 H 0.331 0.669 32 H 0.328 0.672 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -0.527 8.767 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.065 0.935 4 C -0.584 4.584 5 H 0.083 0.917 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.708 3.292 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.232 5.232 13 C -0.120 4.120 14 C 0.037 3.963 15 C -0.057 4.057 16 N -0.354 5.354 17 C -0.227 4.227 18 C -0.019 4.019 19 O -0.310 6.310 20 C -0.015 4.015 21 C -0.186 4.186 22 H 0.035 0.965 23 H 0.093 0.907 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.736 -0.645 8.554 10.319 hybrid contribution 1.393 -0.352 -1.265 1.915 sum 7.129 -0.998 7.289 10.244 Atomic orbital electron populations 1.21667 0.98071 0.99136 0.99123 1.19275 0.92147 0.94537 0.83725 0.93538 1.22017 1.31544 1.13023 0.91776 0.91687 1.24911 0.95025 0.94909 0.98661 1.69905 1.36361 1.22703 1.23300 0.86854 0.79181 0.80020 0.83114 1.20431 1.21388 1.20387 1.62594 1.13726 1.06519 1.40327 1.22301 1.01109 0.90364 0.98223 1.20758 0.89906 0.93139 0.92457 1.21963 0.91668 0.95130 0.96967 1.58436 1.57863 1.07769 1.11348 1.23342 0.93446 1.03056 1.02870 1.22751 0.97186 0.96463 0.85505 1.87848 1.61861 1.64887 1.16393 1.22575 0.91630 0.98231 0.89086 1.22328 0.95265 1.01922 0.99041 0.96494 0.90660 0.96087 0.93033 0.94421 0.92435 0.94859 0.96836 0.89935 0.85603 0.86031 0.86433 0.91428 0.93756 0.89768 0.89768 0.93849 0.91051 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.85 37.16 0.33 -2.68 16 2 C 0.21 5.03 2.03 -68.86 -0.14 4.89 16 3 H 0.05 1.23 5.56 -51.93 -0.29 0.94 16 4 C -0.54 -13.85 5.23 -34.44 -0.18 -14.03 16 5 H 0.07 1.64 4.21 -52.49 -0.22 1.42 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.53 11.39 55.43 0.63 -23.90 16 8 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.51 -10.50 4.23 -220.38 -0.93 -11.43 16 13 C 0.03 0.57 8.15 60.06 0.49 1.06 16 14 C 0.13 2.30 0.22 -131.40 -0.03 2.28 16 15 C 0.07 1.26 4.58 -3.83 -0.02 1.24 16 16 N -0.83 -12.89 9.33 -10.37 -0.10 -12.98 16 17 C -0.19 -3.54 3.26 -26.58 -0.09 -3.63 16 18 C 0.06 0.95 6.57 37.21 0.24 1.19 16 19 O -0.39 -6.40 10.77 -35.23 -0.38 -6.78 16 20 C 0.06 0.87 6.57 37.20 0.24 1.11 16 21 C -0.15 -2.26 4.60 -26.59 -0.12 -2.39 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 2.02 6.25 -51.93 -0.32 1.69 16 24 H 0.02 0.50 6.98 -51.93 -0.36 0.14 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.04 0.67 6.23 -51.93 -0.32 0.34 16 27 H 0.06 1.19 6.76 -51.93 -0.35 0.84 16 28 H 0.03 0.71 4.45 -51.93 -0.23 0.47 16 29 H 0.01 0.21 5.05 -51.93 -0.26 -0.05 16 30 H 0.08 1.66 6.34 -51.93 -0.33 1.33 16 31 H 0.33 4.62 7.25 -39.29 -0.28 4.34 16 32 H 0.33 4.44 9.08 -39.29 -0.36 4.08 16 33 H 0.12 2.57 5.48 -51.92 -0.28 2.28 16 34 H 0.07 1.35 5.95 -51.93 -0.31 1.04 16 35 H 0.04 0.69 6.75 -51.93 -0.35 0.34 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 0.57 6.48 -51.93 -0.34 0.24 16 39 H 0.07 1.15 6.24 -51.93 -0.32 0.83 16 40 H 0.07 1.05 6.60 -51.92 -0.34 0.71 16 LS Contribution 280.31 15.07 4.22 4.22 Total: -1.00 -27.47 280.31 -6.62 -34.10 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.69 Total: 10.31 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 0.64 Total: -9.27 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.40 Total: -48.31 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.38 Total: -6.78 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.47 -6.62 -34.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725053210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.160 kcal (2) G-P(sol) polarization free energy of solvation -27.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds