Wall clock time and date at job start Mon Mar 30 2020 05:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47399 * 2 1 4 4 C 1.50703 * 109.47267 * 239.99513 * 2 1 3 5 5 H 1.08000 * 119.99818 * 240.00423 * 4 2 1 6 6 C 1.37874 * 119.99823 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00231 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99856 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47269 * 60.00396 * 8 6 4 10 10 H 1.48500 * 109.47066 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47369 * 300.00093 * 8 6 4 12 12 N 1.46899 * 109.47018 * 119.99925 * 2 1 3 13 13 C 1.46897 * 111.00544 * 73.53018 * 12 2 1 14 14 C 1.46901 * 110.99983 * 197.48990 * 12 2 1 15 15 C 1.53001 * 109.54676 * 56.58781 * 14 12 2 16 16 N 1.46895 * 109.47230 * 54.01549 * 15 14 12 17 17 C 1.53195 * 109.53946 * 296.32149 * 14 12 2 18 18 C 1.53093 * 109.15194 * 183.16006 * 17 14 12 19 19 O 1.42895 * 109.42611 * 57.60454 * 18 17 14 20 20 C 1.42907 * 114.09986 * 298.83786 * 19 18 17 21 21 C 1.53090 * 109.41072 * 61.15827 * 20 19 18 22 22 H 1.09000 * 109.47267 * 294.21125 * 1 2 3 23 23 H 1.09001 * 109.46864 * 54.20808 * 1 2 3 24 24 H 1.08997 * 109.47312 * 174.20591 * 1 2 3 25 25 H 0.97002 * 120.00335 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.47476 * 183.95524 * 13 12 2 27 27 H 1.09000 * 109.47058 * 303.96183 * 13 12 2 28 28 H 1.09003 * 109.46664 * 63.95429 * 13 12 2 29 29 H 1.08996 * 109.46944 * 174.01723 * 15 14 12 30 30 H 1.08998 * 109.46844 * 294.01901 * 15 14 12 31 31 H 1.00902 * 111.00459 * 56.04823 * 16 15 14 32 32 H 1.00897 * 111.00288 * 180.02562 * 16 15 14 33 33 H 1.09010 * 109.53861 * 63.25421 * 17 14 12 34 34 H 1.09004 * 109.52567 * 303.05882 * 17 14 12 35 35 H 1.09001 * 109.48145 * 297.61451 * 18 17 14 36 36 H 1.09004 * 109.48122 * 177.59551 * 18 17 14 37 37 H 1.08998 * 109.48090 * 181.13912 * 20 19 18 38 38 H 1.08996 * 109.47756 * 301.16302 * 20 19 18 39 39 H 1.08994 * 109.53033 * 62.30052 * 21 20 19 40 40 H 1.09009 * 109.52199 * 182.49002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8280 -0.4196 -5.2203 11 1 3.8076 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1994 13 6 1.8286 -2.1444 1.0841 14 6 3.4283 -0.3657 1.4578 15 6 3.5870 1.1507 1.5854 16 7 2.6545 1.6569 2.6012 17 6 4.2934 -0.8779 0.3019 18 6 5.7662 -0.6032 0.6168 19 8 6.1133 -1.2318 1.8523 20 6 5.3695 -0.7584 2.9769 21 6 3.8807 -1.0394 2.7571 22 1 -0.3634 0.4214 0.9373 23 1 -0.3633 0.6010 -0.8336 24 1 -0.3634 -1.0224 -0.1037 25 1 0.7095 1.1615 -3.4845 26 1 2.1345 -2.6261 2.0128 27 1 0.7770 -2.3584 0.8929 28 1 2.4325 -2.5260 0.2608 29 1 4.6094 1.3854 1.8815 30 1 3.3695 1.6207 0.6263 31 1 2.7931 1.1893 3.4845 32 1 2.7396 2.6570 2.7040 33 1 4.0154 -0.3627 -0.6177 34 1 4.1409 -1.9503 0.1800 35 1 5.9262 0.4719 0.6984 36 1 6.3897 -1.0038 -0.1826 37 1 5.7070 -1.2709 3.8777 38 1 5.5243 0.3146 3.0895 39 1 3.7197 -2.1149 2.6849 40 1 3.3072 -0.6396 3.5934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725053210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:41 Heat of formation + Delta-G solvation = -43.996633 kcal Electronic energy + Delta-G solvation = -19858.312924 eV Core-core repulsion = 17093.872350 eV Total energy + Delta-G solvation = -2764.440574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40471 -38.35718 -35.68347 -34.20678 -32.52412 -32.02856 -30.12807 -27.64841 -27.25519 -24.91548 -24.56692 -23.99320 -21.51700 -19.06025 -18.21751 -17.59270 -17.17282 -16.85681 -16.59201 -15.93519 -15.63146 -15.29879 -14.89898 -14.77601 -14.46574 -14.06051 -13.51070 -13.24369 -13.11770 -13.05131 -12.82768 -12.65078 -12.44627 -12.27152 -12.13471 -12.02890 -11.71770 -11.66160 -11.42719 -10.91411 -10.66069 -10.38995 -10.32958 -9.22205 -8.67550 -7.94731 -6.11189 1.38182 1.40639 1.45852 2.43754 3.00144 3.23735 3.41642 3.85751 3.93334 3.99913 4.19413 4.29294 4.29374 4.40581 4.53615 4.68092 4.75134 4.83496 4.85117 4.91054 5.01620 5.05603 5.10139 5.21513 5.25283 5.30582 5.41689 5.48354 5.58077 5.69499 5.83729 6.13742 6.28640 6.34935 6.44341 6.54356 6.86569 6.87926 7.10109 7.55259 9.00508 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.010031 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.371310 B = 2790.593414 C = 3286.101284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.218 3.782 3 H 0.023 0.977 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.933 3.067 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.272 1.272 12 N -0.509 5.509 13 C 0.033 3.967 14 C 0.123 3.877 15 C 0.083 3.917 16 N -0.835 5.835 17 C -0.182 4.182 18 C 0.065 3.935 19 O -0.400 6.400 20 C 0.061 3.939 21 C -0.139 4.139 22 H 0.024 0.976 23 H 0.050 0.950 24 H 0.016 0.984 25 H 0.257 0.743 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.018 0.982 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.344 0.656 32 H 0.341 0.659 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -1.088 10.413 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.179 4.179 7 N -0.554 5.554 8 Si 0.761 3.239 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.197 1.197 12 N -0.231 5.231 13 C -0.115 4.115 14 C 0.033 3.967 15 C -0.048 4.048 16 N -0.367 5.367 17 C -0.221 4.221 18 C -0.012 4.012 19 O -0.319 6.319 20 C -0.016 4.016 21 C -0.177 4.177 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.148 -1.214 10.223 12.532 hybrid contribution 0.961 -0.175 -1.701 1.962 sum 8.109 -1.390 8.521 11.844 Atomic orbital electron populations 1.21518 0.98737 0.98280 0.98388 1.18998 0.91509 0.93577 0.84817 0.95916 1.22229 1.30504 1.12559 0.92358 0.91723 1.25539 0.95571 0.95638 1.01176 1.70029 1.37820 1.24064 1.23486 0.85997 0.78906 0.78812 0.80217 1.20425 1.21553 1.19719 1.62519 1.15873 1.06569 1.38131 1.22268 1.00116 0.90058 0.99063 1.20916 0.88036 0.94119 0.93661 1.21740 0.93099 0.94143 0.95813 1.58331 1.57708 1.08965 1.11690 1.23134 0.95777 1.01451 1.01758 1.22645 0.95221 0.97156 0.86218 1.87850 1.62137 1.65234 1.16655 1.22776 0.90135 0.99511 0.89190 1.22270 0.96722 1.01147 0.97593 0.95738 0.93124 0.96493 0.93375 0.91672 0.93627 0.96369 0.94596 0.93678 0.84178 0.84615 0.89922 0.92933 0.92762 0.89009 0.86870 0.92546 0.91675 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.57 8.85 71.98 0.64 -4.93 16 2 C 0.22 10.63 2.03 44.17 0.09 10.72 16 3 H 0.02 1.24 5.56 -2.39 -0.01 1.23 16 4 C -0.54 -27.78 5.23 25.60 0.13 -27.64 16 5 H 0.06 3.31 4.21 -2.91 -0.01 3.30 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -52.00 11.39 21.45 0.24 -51.75 16 8 Si 0.93 43.18 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.51 -20.64 4.23 -851.17 -3.60 -24.24 16 13 C 0.03 1.31 8.15 127.69 1.04 2.35 16 14 C 0.12 4.26 0.22 3.66 0.00 4.26 16 15 C 0.08 2.74 4.58 86.30 0.39 3.13 16 16 N -0.84 -24.55 9.33 -186.73 -1.74 -26.29 16 17 C -0.18 -6.74 3.26 30.69 0.10 -6.64 16 18 C 0.06 1.99 6.57 72.01 0.47 2.47 16 19 O -0.40 -11.85 10.77 -148.98 -1.60 -13.45 16 20 C 0.06 1.45 6.57 72.01 0.47 1.92 16 21 C -0.14 -3.84 4.60 30.69 0.14 -3.70 16 22 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.05 2.78 6.25 -2.39 -0.01 2.77 16 24 H 0.02 0.81 6.98 -2.39 -0.02 0.79 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 26 H 0.06 2.18 6.23 -2.39 -0.01 2.16 16 27 H 0.04 1.87 6.76 -2.39 -0.02 1.85 16 28 H 0.02 0.76 4.45 -2.39 -0.01 0.75 16 29 H 0.04 1.02 5.05 -2.39 -0.01 1.01 16 30 H 0.04 1.84 6.34 -2.39 -0.02 1.82 16 31 H 0.34 8.57 7.25 -89.69 -0.65 7.92 16 32 H 0.34 8.60 9.08 -89.70 -0.81 7.79 16 33 H 0.08 3.66 5.48 -2.38 -0.01 3.65 16 34 H 0.05 2.08 5.95 -2.38 -0.01 2.06 16 35 H 0.05 1.56 6.75 -2.39 -0.02 1.55 16 36 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.23 6.48 -2.39 -0.02 1.22 16 39 H 0.06 1.90 6.24 -2.39 -0.01 1.88 16 40 H 0.09 2.19 6.60 -2.38 -0.02 2.18 16 Total: -1.00 -59.02 280.31 -1.13 -60.15 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.39 Total: 26.92 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 3.93 Total: -16.55 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -5.10 Total: -102.28 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.60 Total: -13.45 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -59.02 -1.13 -60.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725053210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.157 kcal (2) G-P(sol) polarization free energy of solvation -59.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds