Wall clock time and date at job start Mon Mar 30 2020 03:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47316 * 2 1 4 4 C 1.46899 * 110.99511 * 298.49566 * 3 2 1 5 5 C 1.50700 * 109.47141 * 288.13191 * 4 3 2 6 6 H 1.07996 * 119.99966 * 4.27425 * 5 4 3 7 7 C 1.37880 * 120.00205 * 184.26478 * 5 4 3 8 8 N 1.31516 * 119.99576 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47289 * 60.00361 * 9 7 5 11 11 H 1.48508 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47203 * 300.00053 * 9 7 5 13 13 C 1.46896 * 110.99955 * 62.44668 * 3 2 1 14 14 C 1.53000 * 109.46997 * 76.99226 * 13 3 2 15 15 H 1.08999 * 109.47408 * 53.08826 * 14 13 3 16 16 O 1.42899 * 109.47089 * 293.08687 * 14 13 3 17 17 C 1.53000 * 109.47112 * 173.09101 * 14 13 3 18 18 N 1.46901 * 109.47068 * 184.99876 * 17 14 13 19 19 C 1.46906 * 110.99985 * 179.97438 * 18 17 14 20 20 C 1.52998 * 117.49682 * 223.62038 * 19 18 17 21 21 C 1.53001 * 60.00278 * 252.51250 * 20 19 18 22 22 H 1.08998 * 109.47015 * 183.35118 * 1 2 3 23 23 H 1.08998 * 109.47275 * 303.36116 * 1 2 3 24 24 H 1.09000 * 109.46602 * 63.36154 * 1 2 3 25 25 H 1.09000 * 109.47546 * 239.99167 * 2 1 3 26 26 H 1.09001 * 109.46827 * 119.99539 * 2 1 3 27 27 H 1.08998 * 109.47596 * 48.13632 * 4 3 2 28 28 H 1.09002 * 109.47087 * 168.13782 * 4 3 2 29 29 H 0.96999 * 119.99557 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47654 * 316.99003 * 13 3 2 31 31 H 1.09006 * 109.47208 * 196.98884 * 13 3 2 32 32 H 0.96698 * 114.00203 * 300.00629 * 16 14 13 33 33 H 1.08997 * 109.47281 * 304.99663 * 17 14 13 34 34 H 1.08998 * 109.47323 * 64.99934 * 17 14 13 35 35 H 1.00900 * 111.00061 * 56.04770 * 18 17 14 36 36 H 1.09002 * 115.54652 * 9.33365 * 19 18 17 37 37 H 1.08992 * 117.50360 * 0.02562 * 20 19 18 38 38 H 1.09007 * 117.49380 * 145.02408 * 20 19 18 39 39 H 1.08997 * 117.50093 * 252.51920 * 21 20 19 40 40 H 1.09000 * 117.52051 * 107.47596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5783 2.0993 -1.2053 5 6 2.3373 1.5840 -2.4009 6 1 3.0233 0.7574 -2.2898 7 6 2.1557 2.1677 -3.6368 8 7 1.3205 3.1746 -3.7720 9 14 3.0960 1.5285 -5.1189 10 1 2.7552 0.1006 -5.3431 11 1 2.7258 2.3206 -6.3193 12 1 4.5548 1.6565 -4.8725 13 6 1.5971 2.0928 1.2159 14 6 2.4734 1.6552 2.3913 15 1 3.5237 1.7793 2.1274 16 8 2.2167 0.2819 2.6915 17 6 2.1503 2.5139 3.6156 18 7 3.0726 2.1759 4.7080 19 6 2.7919 2.9832 5.9028 20 6 3.9871 3.5766 6.6512 21 6 3.2083 2.4077 7.2580 22 1 -0.3633 -1.0259 0.0601 23 1 -0.3634 0.5651 0.8583 24 1 -0.3632 0.4608 -0.9186 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5110 1.9357 -1.3543 28 1 1.7692 3.1658 -1.0860 29 1 1.1931 3.5855 -4.6414 30 1 0.5554 1.8552 1.4311 31 1 1.7011 3.1674 1.0654 32 1 1.2993 0.0974 2.9353 33 1 2.2608 3.5677 3.3598 34 1 1.1253 2.3227 3.9333 35 1 4.0327 2.2833 4.4169 36 1 1.8765 3.5739 5.8666 37 1 4.9816 3.3684 6.2569 38 1 3.8582 4.5581 7.1076 39 1 2.5670 2.6202 8.1134 40 1 3.6900 1.4300 7.2629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:00 Heat of formation + Delta-G solvation = -19.279398 kcal Electronic energy + Delta-G solvation = -17817.722574 eV Core-core repulsion = 15054.353820 eV Total energy + Delta-G solvation = -2763.368754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -38.71062 -37.64956 -35.75817 -33.19605 -32.52378 -30.11526 -28.69163 -26.40006 -23.97879 -23.04768 -22.55141 -21.61199 -21.03786 -19.33857 -16.54206 -16.26957 -16.09464 -15.70731 -15.07742 -14.88194 -14.48000 -14.11624 -13.81200 -13.33430 -12.85067 -12.77430 -12.42295 -12.05065 -11.71380 -11.66006 -11.35660 -11.08881 -11.00278 -10.94771 -10.76512 -10.67698 -10.56431 -10.40690 -10.15587 -9.91976 -9.34615 -8.95130 -8.38833 -8.31379 -7.10560 -5.99136 -3.99349 3.36073 3.39488 3.43176 3.62097 3.86739 4.45719 4.70678 4.71942 4.76918 4.85349 4.98707 5.29746 5.31449 5.38179 5.44702 5.45718 5.60883 5.66003 5.74228 5.77495 5.91937 5.96694 6.02853 6.15856 6.23978 6.41385 6.60521 6.74124 6.91544 7.05073 7.21310 7.33817 7.45335 7.86047 7.98998 8.15909 8.30187 8.61006 9.08238 9.64259 11.11609 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037088 B = 0.004314 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.788725 B = 6488.303216 C = 6797.304260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.048 3.952 3 N -0.527 5.527 4 C 0.186 3.814 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.019 3.981 14 C 0.118 3.882 15 H 0.102 0.898 16 O -0.543 6.543 17 C 0.029 3.971 18 N -0.649 5.649 19 C 0.023 3.977 20 C -0.209 4.209 21 C -0.173 4.173 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.083 0.917 27 H -0.004 1.004 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.364 0.636 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.344 0.656 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -0.588 17.600 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.080 4.080 3 N -0.250 5.250 4 C 0.061 3.939 5 C -0.540 4.540 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.111 4.111 14 C 0.058 3.942 15 H 0.120 0.880 16 O -0.347 6.347 17 C -0.101 4.101 18 N -0.279 5.279 19 C -0.088 4.088 20 C -0.248 4.248 21 C -0.211 4.211 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.014 0.986 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.131 -1.064 17.486 17.555 hybrid contribution -0.754 0.904 -1.038 1.569 sum 0.377 -0.160 16.449 16.454 Atomic orbital electron populations 1.22401 1.00093 1.00563 1.01674 1.22276 0.91499 0.91446 1.02803 1.62251 1.59091 1.01990 1.01670 1.19841 0.94346 0.93664 0.86006 1.21134 1.24169 1.16659 0.92025 0.92019 1.24981 0.95619 0.95141 0.98982 1.69949 1.36424 1.23603 1.24229 0.86573 0.80351 0.78766 0.81785 1.20301 1.21451 1.20202 1.22767 0.96445 0.99219 0.92648 1.21975 1.00943 0.80981 0.90277 0.88013 1.86601 1.32531 1.25400 1.90159 1.22767 0.97142 0.98287 0.91920 1.60159 1.07889 1.55417 1.04440 1.22446 0.97974 0.98497 0.89901 1.23424 0.97021 0.98249 1.06119 1.23103 1.03511 0.98157 0.96337 0.93490 0.93828 0.91886 0.90983 0.89938 0.98603 0.95567 0.92988 0.94805 0.91098 0.78996 0.94100 0.90843 0.83613 0.87577 0.88686 0.88947 0.88966 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.30 37.16 0.35 -2.98 16 2 C 0.05 0.93 5.71 -3.82 -0.02 0.91 16 3 N -0.53 -11.20 4.58 -236.07 -1.08 -12.28 16 4 C 0.19 4.82 4.58 -4.98 -0.02 4.80 16 5 C -0.50 -14.21 8.64 -34.44 -0.30 -14.50 16 6 H 0.06 1.75 7.36 -52.49 -0.39 1.36 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.02 0.32 4.68 -3.83 -0.02 0.31 16 14 C 0.12 1.69 3.36 -26.73 -0.09 1.60 16 15 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 16 O -0.54 -7.92 10.49 -35.23 -0.37 -8.29 16 17 C 0.03 0.34 5.17 -3.82 -0.02 0.32 16 18 N -0.65 -7.35 6.73 -106.72 -0.72 -8.06 16 19 C 0.02 0.22 6.31 -67.71 -0.43 -0.20 16 20 C -0.21 -1.79 10.23 -26.73 -0.27 -2.06 16 21 C -0.17 -1.54 10.46 -26.73 -0.28 -1.82 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.69 6.00 -51.93 -0.31 0.38 16 24 H 0.06 1.29 6.37 -51.93 -0.33 0.96 16 25 H 0.07 1.56 7.15 -51.93 -0.37 1.19 16 26 H 0.08 1.47 5.43 -51.93 -0.28 1.19 16 27 H 0.00 -0.10 5.88 -51.93 -0.31 -0.41 16 28 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.55 5.67 -51.93 -0.29 0.25 16 31 H 0.07 1.23 7.62 -51.93 -0.40 0.84 16 32 H 0.36 4.32 9.05 45.56 0.41 4.73 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.34 3.82 8.52 -39.29 -0.33 3.49 16 36 H 0.11 0.99 7.90 -51.93 -0.41 0.58 16 37 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -30.34 317.86 -8.79 -39.13 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.92 Total: 6.22 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -1.20 Total: -12.21 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.06 Total: -46.54 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.37 Total: -8.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.34 -8.79 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.847 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds