Wall clock time and date at job start Mon Mar 30 2020 03:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47316 * 2 1 4 4 C 1.46899 * 110.99511 * 298.49566 * 3 2 1 5 5 C 1.50700 * 109.47141 * 288.13191 * 4 3 2 6 6 H 1.07996 * 119.99966 * 4.27425 * 5 4 3 7 7 C 1.37880 * 120.00205 * 184.26478 * 5 4 3 8 8 N 1.31516 * 119.99576 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00107 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47289 * 60.00361 * 9 7 5 11 11 H 1.48508 * 109.46949 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47203 * 300.00053 * 9 7 5 13 13 C 1.46896 * 110.99955 * 62.44668 * 3 2 1 14 14 C 1.53000 * 109.46997 * 76.99226 * 13 3 2 15 15 H 1.08999 * 109.47408 * 53.08826 * 14 13 3 16 16 O 1.42899 * 109.47089 * 293.08687 * 14 13 3 17 17 C 1.53000 * 109.47112 * 173.09101 * 14 13 3 18 18 N 1.46901 * 109.47068 * 184.99876 * 17 14 13 19 19 C 1.46906 * 110.99985 * 179.97438 * 18 17 14 20 20 C 1.52998 * 117.49682 * 223.62038 * 19 18 17 21 21 C 1.53001 * 60.00278 * 252.51250 * 20 19 18 22 22 H 1.08998 * 109.47015 * 183.35118 * 1 2 3 23 23 H 1.08998 * 109.47275 * 303.36116 * 1 2 3 24 24 H 1.09000 * 109.46602 * 63.36154 * 1 2 3 25 25 H 1.09000 * 109.47546 * 239.99167 * 2 1 3 26 26 H 1.09001 * 109.46827 * 119.99539 * 2 1 3 27 27 H 1.08998 * 109.47596 * 48.13632 * 4 3 2 28 28 H 1.09002 * 109.47087 * 168.13782 * 4 3 2 29 29 H 0.96999 * 119.99557 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.47654 * 316.99003 * 13 3 2 31 31 H 1.09006 * 109.47208 * 196.98884 * 13 3 2 32 32 H 0.96698 * 114.00203 * 300.00629 * 16 14 13 33 33 H 1.08997 * 109.47281 * 304.99663 * 17 14 13 34 34 H 1.08998 * 109.47323 * 64.99934 * 17 14 13 35 35 H 1.00900 * 111.00061 * 56.04770 * 18 17 14 36 36 H 1.09002 * 115.54652 * 9.33365 * 19 18 17 37 37 H 1.08992 * 117.50360 * 0.02562 * 20 19 18 38 38 H 1.09007 * 117.49380 * 145.02408 * 20 19 18 39 39 H 1.08997 * 117.50093 * 252.51920 * 21 20 19 40 40 H 1.09000 * 117.52051 * 107.47596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5783 2.0993 -1.2053 5 6 2.3373 1.5840 -2.4009 6 1 3.0233 0.7574 -2.2898 7 6 2.1557 2.1677 -3.6368 8 7 1.3205 3.1746 -3.7720 9 14 3.0960 1.5285 -5.1189 10 1 2.7552 0.1006 -5.3431 11 1 2.7258 2.3206 -6.3193 12 1 4.5548 1.6565 -4.8725 13 6 1.5971 2.0928 1.2159 14 6 2.4734 1.6552 2.3913 15 1 3.5237 1.7793 2.1274 16 8 2.2167 0.2819 2.6915 17 6 2.1503 2.5139 3.6156 18 7 3.0726 2.1759 4.7080 19 6 2.7919 2.9832 5.9028 20 6 3.9871 3.5766 6.6512 21 6 3.2083 2.4077 7.2580 22 1 -0.3633 -1.0259 0.0601 23 1 -0.3634 0.5651 0.8583 24 1 -0.3632 0.4608 -0.9186 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5110 1.9357 -1.3543 28 1 1.7692 3.1658 -1.0860 29 1 1.1931 3.5855 -4.6414 30 1 0.5554 1.8552 1.4311 31 1 1.7011 3.1674 1.0654 32 1 1.2993 0.0974 2.9353 33 1 2.2608 3.5677 3.3598 34 1 1.1253 2.3227 3.9333 35 1 4.0327 2.2833 4.4169 36 1 1.8765 3.5739 5.8666 37 1 4.9816 3.3684 6.2569 38 1 3.8582 4.5581 7.1076 39 1 2.5670 2.6202 8.1134 40 1 3.6900 1.4300 7.2629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:59 Heat of formation + Delta-G solvation = -42.905828 kcal Electronic energy + Delta-G solvation = -17818.747093 eV Core-core repulsion = 15054.353820 eV Total energy + Delta-G solvation = -2764.393273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94740 -38.63882 -37.13773 -34.66092 -34.12543 -31.48136 -30.39630 -28.08369 -25.32281 -24.92959 -23.22214 -22.66564 -22.02815 -20.94134 -18.36642 -17.56938 -17.31384 -16.78790 -16.73302 -16.08794 -15.83772 -15.72375 -14.97799 -14.54774 -14.50172 -14.01029 -13.75518 -13.45086 -13.13425 -12.94173 -12.69578 -12.64862 -12.51968 -12.36036 -12.33255 -11.99037 -11.94795 -11.68109 -11.59016 -11.35750 -11.25744 -10.58227 -10.40007 -9.14343 -8.82219 -8.18165 -6.27171 1.40141 1.43174 1.51020 2.40837 2.83291 3.02407 3.13404 3.48497 3.64392 4.01748 4.05091 4.11874 4.15511 4.24213 4.26343 4.43567 4.49575 4.59614 4.66354 4.72513 4.80224 4.81128 4.85696 4.99068 5.07449 5.08251 5.24307 5.29922 5.32311 5.39682 5.56461 5.71250 6.07602 6.12584 6.35006 6.47453 6.73406 6.89136 6.98396 7.41776 8.91814 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037088 B = 0.004314 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.788725 B = 6488.303216 C = 6797.304260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.202 3.798 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.020 3.980 14 C 0.133 3.867 15 H 0.085 0.915 16 O -0.553 6.553 17 C 0.041 3.959 18 N -0.657 5.657 19 C 0.009 3.991 20 C -0.202 4.202 21 C -0.171 4.171 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.026 0.974 25 H 0.043 0.957 26 H 0.105 0.895 27 H -0.023 1.023 28 H -0.002 1.002 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.378 0.622 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.343 0.657 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -1.194 18.841 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.077 4.077 3 N -0.263 5.263 4 C 0.076 3.924 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.109 4.109 14 C 0.073 3.927 15 H 0.103 0.897 16 O -0.359 6.359 17 C -0.089 4.089 18 N -0.287 5.287 19 C -0.101 4.101 20 C -0.241 4.241 21 C -0.209 4.209 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.123 0.877 27 H -0.006 1.006 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.226 0.774 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.287 -1.682 18.759 18.878 hybrid contribution -0.818 1.078 -1.344 1.907 sum 0.470 -0.605 17.415 17.432 Atomic orbital electron populations 1.22280 0.98532 1.02207 1.00644 1.22274 0.92779 0.90188 1.02451 1.62151 1.59735 1.02812 1.01568 1.19480 0.92881 0.92364 0.87708 1.21451 1.24322 1.16638 0.93386 0.92576 1.25861 0.96470 0.95265 1.02040 1.70069 1.37737 1.24726 1.25068 0.85500 0.79044 0.78457 0.78003 1.19405 1.20754 1.19492 1.22849 0.97882 0.98401 0.91758 1.21681 0.99207 0.81497 0.90285 0.89749 1.86561 1.33920 1.25329 1.90098 1.22568 0.97813 0.97614 0.90884 1.60155 1.07747 1.56142 1.04671 1.22531 0.98898 0.99159 0.89551 1.23468 0.96519 0.98754 1.05366 1.23146 1.03594 0.97939 0.96254 0.90854 0.91838 0.95438 0.93800 0.87678 1.00579 0.98388 0.92791 0.93402 0.91983 0.77355 0.93893 0.89695 0.83759 0.86942 0.88784 0.87725 0.87588 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.11 9.30 71.98 0.67 -5.44 16 2 C 0.05 1.95 5.71 86.30 0.49 2.45 16 3 N -0.54 -23.16 4.58 -900.79 -4.12 -27.28 16 4 C 0.20 10.79 4.58 85.56 0.39 11.19 16 5 C -0.52 -30.13 8.64 25.60 0.22 -29.91 16 6 H 0.06 3.24 7.36 -2.91 -0.02 3.22 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 C 0.02 0.68 4.68 86.30 0.40 1.08 16 14 C 0.13 3.65 3.36 30.59 0.10 3.75 16 15 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 16 O -0.55 -14.95 10.49 -148.98 -1.56 -16.52 16 17 C 0.04 0.89 5.17 86.30 0.45 1.33 16 18 N -0.66 -13.78 6.73 -491.55 -3.31 -17.08 16 19 C 0.01 0.16 6.31 44.92 0.28 0.44 16 20 C -0.20 -3.06 10.23 30.59 0.31 -2.75 16 21 C -0.17 -2.71 10.46 30.60 0.32 -2.39 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 1.90 6.00 -2.39 -0.01 1.88 16 24 H 0.03 1.12 6.37 -2.39 -0.02 1.11 16 25 H 0.04 1.92 7.15 -2.39 -0.02 1.90 16 26 H 0.11 3.58 5.43 -2.39 -0.01 3.56 16 27 H -0.02 -1.32 5.88 -2.39 -0.01 -1.34 16 28 H 0.00 -0.12 7.67 -2.39 -0.02 -0.13 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.05 1.47 5.67 -2.39 -0.01 1.46 16 31 H 0.06 2.18 7.62 -2.38 -0.02 2.16 16 32 H 0.38 7.85 9.05 -74.06 -0.67 7.18 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.34 7.21 8.52 -89.69 -0.76 6.45 16 36 H 0.11 1.84 7.90 -2.39 -0.02 1.82 16 37 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 38 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -65.63 317.86 -2.98 -68.61 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -0.40 Total: 21.33 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.11 Total: -19.71 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -7.15 Total: -100.96 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.56 Total: -16.52 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.63 -2.98 -68.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.705 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds