Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47088 * 2 1 4 4 C 1.46900 * 111.00368 * 196.08703 * 3 2 1 5 5 C 1.50697 * 109.47062 * 66.04739 * 4 3 2 6 6 H 1.08006 * 120.00167 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00395 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00344 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99579 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47016 * 90.00472 * 9 7 5 11 11 H 1.48499 * 109.47260 * 210.00215 * 9 7 5 12 12 H 1.48500 * 109.47348 * 330.00412 * 9 7 5 13 13 C 1.46898 * 110.99879 * 72.13176 * 3 2 1 14 14 C 1.53003 * 109.47548 * 199.80290 * 13 3 2 15 15 H 1.09004 * 109.46813 * 301.26179 * 14 13 3 16 16 O 1.42908 * 109.46740 * 61.25512 * 14 13 3 17 17 C 1.52991 * 109.47330 * 181.25536 * 14 13 3 18 18 N 1.46900 * 109.47392 * 179.97438 * 17 14 13 19 19 C 1.46895 * 111.00526 * 180.02562 * 18 17 14 20 20 C 1.52995 * 117.49953 * 223.75019 * 19 18 17 21 21 C 1.52997 * 117.49971 * 155.08882 * 19 18 17 22 22 H 1.09005 * 109.47434 * 61.16209 * 1 2 3 23 23 H 1.09003 * 109.46928 * 181.15915 * 1 2 3 24 24 H 1.08997 * 109.47350 * 301.15635 * 1 2 3 25 25 H 1.09010 * 109.46919 * 240.00759 * 2 1 3 26 26 H 1.08993 * 109.47609 * 120.00566 * 2 1 3 27 27 H 1.09004 * 109.47585 * 186.04713 * 4 3 2 28 28 H 1.08998 * 109.47168 * 306.05294 * 4 3 2 29 29 H 0.96994 * 119.99630 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47304 * 319.80768 * 13 3 2 31 31 H 1.09001 * 109.47001 * 79.80427 * 13 3 2 32 32 H 0.96704 * 113.99440 * 64.91338 * 16 14 13 33 33 H 1.08994 * 109.47531 * 300.00161 * 17 14 13 34 34 H 1.09007 * 109.46952 * 60.00521 * 17 14 13 35 35 H 1.00902 * 110.99987 * 56.04846 * 18 17 14 36 36 H 1.09001 * 115.54756 * 9.41669 * 19 18 17 37 37 H 1.08996 * 117.50396 * 359.97438 * 20 19 18 38 38 H 1.09001 * 117.50038 * 145.02287 * 20 19 18 39 39 H 1.09000 * 117.50005 * 214.98393 * 21 19 18 40 40 H 1.08993 * 117.50180 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4375 1.4422 -0.3800 5 6 3.5909 1.0077 -1.8148 6 1 2.7219 0.7185 -2.3874 7 6 4.8405 0.9795 -2.3968 8 7 4.9743 0.6008 -3.6492 9 14 6.3433 1.4804 -1.4069 10 1 6.9070 0.2877 -0.7251 11 1 7.3646 2.0595 -2.3161 12 1 5.9531 2.4922 -0.3923 13 6 1.7984 2.0215 1.3053 14 6 1.8460 3.5425 1.1457 15 1 2.8136 3.8348 0.7376 16 8 0.8081 3.9609 0.2569 17 6 1.6468 4.2049 2.5103 18 7 1.6932 5.6652 2.3572 19 6 1.5056 6.3364 3.6503 20 6 0.5691 7.5456 3.6893 21 6 2.0824 7.7450 3.8053 22 1 -0.3634 0.4957 -0.9002 23 1 -0.3633 -1.0275 0.0208 24 1 -0.3634 0.5317 0.8794 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.8027 2.4631 -0.2685 28 1 4.0134 0.7778 0.2642 29 1 5.8535 0.5806 -4.0584 30 1 0.8229 1.7272 1.6924 31 1 2.5758 1.7046 2.0005 32 1 -0.0848 3.8006 0.5919 33 1 0.6793 3.9126 2.9183 34 1 2.4385 3.8858 3.1882 35 1 1.0109 5.9800 1.6838 36 1 1.5243 5.6859 4.5247 37 1 0.0925 7.8435 2.7555 38 1 -0.0280 7.6910 4.5896 39 1 2.4802 8.0214 4.7817 40 1 2.6013 8.1735 2.9480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = -19.972158 kcal Electronic energy + Delta-G solvation = -17900.300548 eV Core-core repulsion = 15136.901753 eV Total energy + Delta-G solvation = -2763.398794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.66231 -37.53392 -35.89984 -33.05691 -32.50590 -30.57862 -29.26322 -26.75763 -24.06990 -22.54766 -22.13247 -21.50747 -21.15053 -19.68105 -17.00659 -16.41238 -16.10035 -15.87914 -15.07297 -14.76985 -14.24206 -14.09765 -13.67278 -13.52481 -13.16901 -12.60493 -12.46777 -12.32618 -12.16279 -11.69794 -11.54417 -11.20944 -11.14406 -11.07678 -10.71814 -10.67440 -10.57466 -10.41394 -9.89677 -9.79964 -9.61174 -9.14241 -8.52579 -8.32821 -7.30620 -6.00187 -3.96631 3.31491 3.39605 3.42268 3.62193 3.84934 4.46592 4.60331 4.71829 4.78418 4.82176 4.97039 5.21098 5.23930 5.33187 5.35699 5.44853 5.55281 5.59275 5.68452 5.76087 5.78720 5.92089 5.97056 5.97882 6.06605 6.29329 6.44043 6.68356 6.71900 6.91617 6.93951 7.02465 7.27482 7.66702 7.91967 8.06237 8.10810 8.71612 9.09186 9.61881 11.13115 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.005787 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.866910 B = 4837.156835 C = 5750.855356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.514 5.514 4 C 0.161 3.839 5 C -0.505 4.505 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.022 3.978 14 C 0.115 3.885 15 H 0.108 0.892 16 O -0.538 6.538 17 C 0.030 3.970 18 N -0.653 5.653 19 C 0.023 3.977 20 C -0.209 4.209 21 C -0.173 4.173 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.015 0.985 27 H 0.030 0.970 28 H -0.019 1.019 29 H 0.263 0.737 30 H 0.066 0.934 31 H 0.031 0.969 32 H 0.359 0.641 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.351 0.649 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 7.973 15.917 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.238 5.238 4 C 0.035 3.965 5 C -0.543 4.543 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.701 3.299 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.108 4.108 14 C 0.055 3.945 15 H 0.126 0.874 16 O -0.340 6.340 17 C -0.100 4.100 18 N -0.285 5.285 19 C -0.088 4.088 20 C -0.248 4.248 21 C -0.211 4.211 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.033 0.967 27 H 0.048 0.952 28 H -0.002 1.002 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.204 0.796 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.172 0.828 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.048 8.383 15.045 19.011 hybrid contribution 0.065 -0.502 1.663 1.739 sum -7.983 7.881 16.708 20.125 Atomic orbital electron populations 1.21782 0.96462 1.00138 1.01566 1.22015 0.94350 0.89906 1.01085 1.61860 1.21253 1.16073 1.24574 1.20223 0.83311 0.96070 0.96899 1.21027 0.94739 1.43849 0.94724 0.90100 1.24892 0.98642 0.94999 0.94792 1.69894 1.23623 1.48401 1.12129 0.86886 0.83318 0.79241 0.80440 1.20476 1.21145 1.19139 1.22738 1.00307 0.95216 0.92491 1.21981 0.93059 0.91852 0.87631 0.87426 1.86738 1.16163 1.84769 1.46342 1.22736 1.00372 0.87770 0.99115 1.60074 1.55848 1.05073 1.07478 1.22430 1.03204 0.89853 0.93308 1.23437 0.93564 1.04546 1.03260 1.23121 0.95275 0.99694 1.03030 0.91946 0.93389 0.94006 0.89048 0.96698 0.95240 1.00189 0.92731 0.91602 0.95064 0.79643 0.94982 0.90258 0.82847 0.87593 0.88653 0.88980 0.88907 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.00 37.16 0.37 -1.81 16 2 C 0.05 1.04 5.52 -3.83 -0.02 1.02 16 3 N -0.51 -10.66 4.27 -236.07 -1.01 -11.67 16 4 C 0.16 3.97 3.62 -4.98 -0.02 3.95 16 5 C -0.51 -14.59 8.84 -34.44 -0.30 -14.90 16 6 H 0.08 2.55 7.50 -52.48 -0.39 2.15 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 9 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 13 C 0.02 0.36 4.51 -3.82 -0.02 0.35 16 14 C 0.11 1.78 3.31 -26.73 -0.09 1.69 16 15 H 0.11 2.03 6.76 -51.93 -0.35 1.68 16 16 O -0.54 -8.52 12.57 -35.23 -0.44 -8.96 16 17 C 0.03 0.36 5.20 -3.83 -0.02 0.34 16 18 N -0.65 -7.93 6.78 -106.74 -0.72 -8.65 16 19 C 0.02 0.23 6.31 -67.72 -0.43 -0.19 16 20 C -0.21 -1.81 10.23 -26.70 -0.27 -2.09 16 21 C -0.17 -1.64 10.46 -26.70 -0.28 -1.92 16 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.57 6.51 -51.93 -0.34 0.23 16 25 H 0.09 2.01 6.59 -51.92 -0.34 1.67 16 26 H 0.01 0.27 8.05 -51.93 -0.42 -0.15 16 27 H 0.03 0.75 5.68 -51.93 -0.29 0.45 16 28 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.07 0.92 6.24 -51.93 -0.32 0.60 16 31 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 32 H 0.36 4.20 9.03 45.56 0.41 4.61 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.35 4.19 7.91 -39.29 -0.31 3.88 16 36 H 0.11 0.99 7.90 -51.93 -0.41 0.58 16 37 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -31.74 320.37 -8.54 -40.28 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.12 Total: 5.82 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.18 Total: -11.66 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.96 Total: -47.58 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.44 Total: -8.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.74 -8.54 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.306 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds