Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47088 * 2 1 4 4 C 1.46900 * 111.00368 * 196.08703 * 3 2 1 5 5 C 1.50697 * 109.47062 * 66.04739 * 4 3 2 6 6 H 1.08006 * 120.00167 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00395 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00344 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99579 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47016 * 90.00472 * 9 7 5 11 11 H 1.48499 * 109.47260 * 210.00215 * 9 7 5 12 12 H 1.48500 * 109.47348 * 330.00412 * 9 7 5 13 13 C 1.46898 * 110.99879 * 72.13176 * 3 2 1 14 14 C 1.53003 * 109.47548 * 199.80290 * 13 3 2 15 15 H 1.09004 * 109.46813 * 301.26179 * 14 13 3 16 16 O 1.42908 * 109.46740 * 61.25512 * 14 13 3 17 17 C 1.52991 * 109.47330 * 181.25536 * 14 13 3 18 18 N 1.46900 * 109.47392 * 179.97438 * 17 14 13 19 19 C 1.46895 * 111.00526 * 180.02562 * 18 17 14 20 20 C 1.52995 * 117.49953 * 223.75019 * 19 18 17 21 21 C 1.52997 * 117.49971 * 155.08882 * 19 18 17 22 22 H 1.09005 * 109.47434 * 61.16209 * 1 2 3 23 23 H 1.09003 * 109.46928 * 181.15915 * 1 2 3 24 24 H 1.08997 * 109.47350 * 301.15635 * 1 2 3 25 25 H 1.09010 * 109.46919 * 240.00759 * 2 1 3 26 26 H 1.08993 * 109.47609 * 120.00566 * 2 1 3 27 27 H 1.09004 * 109.47585 * 186.04713 * 4 3 2 28 28 H 1.08998 * 109.47168 * 306.05294 * 4 3 2 29 29 H 0.96994 * 119.99630 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47304 * 319.80768 * 13 3 2 31 31 H 1.09001 * 109.47001 * 79.80427 * 13 3 2 32 32 H 0.96704 * 113.99440 * 64.91338 * 16 14 13 33 33 H 1.08994 * 109.47531 * 300.00161 * 17 14 13 34 34 H 1.09007 * 109.46952 * 60.00521 * 17 14 13 35 35 H 1.00902 * 110.99987 * 56.04846 * 18 17 14 36 36 H 1.09001 * 115.54756 * 9.41669 * 19 18 17 37 37 H 1.08996 * 117.50396 * 359.97438 * 20 19 18 38 38 H 1.09001 * 117.50038 * 145.02287 * 20 19 18 39 39 H 1.09000 * 117.50005 * 214.98393 * 21 19 18 40 40 H 1.08993 * 117.50180 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4375 1.4422 -0.3800 5 6 3.5909 1.0077 -1.8148 6 1 2.7219 0.7185 -2.3874 7 6 4.8405 0.9795 -2.3968 8 7 4.9743 0.6008 -3.6492 9 14 6.3433 1.4804 -1.4069 10 1 6.9070 0.2877 -0.7251 11 1 7.3646 2.0595 -2.3161 12 1 5.9531 2.4922 -0.3923 13 6 1.7984 2.0215 1.3053 14 6 1.8460 3.5425 1.1457 15 1 2.8136 3.8348 0.7376 16 8 0.8081 3.9609 0.2569 17 6 1.6468 4.2049 2.5103 18 7 1.6932 5.6652 2.3572 19 6 1.5056 6.3364 3.6503 20 6 0.5691 7.5456 3.6893 21 6 2.0824 7.7450 3.8053 22 1 -0.3634 0.4957 -0.9002 23 1 -0.3633 -1.0275 0.0208 24 1 -0.3634 0.5317 0.8794 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 3.8027 2.4631 -0.2685 28 1 4.0134 0.7778 0.2642 29 1 5.8535 0.5806 -4.0584 30 1 0.8229 1.7272 1.6924 31 1 2.5758 1.7046 2.0005 32 1 -0.0848 3.8006 0.5919 33 1 0.6793 3.9126 2.9183 34 1 2.4385 3.8858 3.1882 35 1 1.0109 5.9800 1.6838 36 1 1.5243 5.6859 4.5247 37 1 0.0925 7.8435 2.7555 38 1 -0.0280 7.6910 4.5896 39 1 2.4802 8.0214 4.7817 40 1 2.6013 8.1735 2.9480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = -45.961083 kcal Electronic energy + Delta-G solvation = -17901.427512 eV Core-core repulsion = 15136.901753 eV Total energy + Delta-G solvation = -2764.525759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82674 -38.58287 -37.23816 -34.69657 -34.00697 -32.00504 -30.85842 -28.37203 -25.35775 -23.97730 -23.22585 -22.57184 -22.09255 -21.25290 -19.05739 -17.63159 -17.27265 -16.82498 -16.44615 -16.21267 -15.78507 -15.62456 -15.01284 -14.66370 -14.51142 -14.25067 -14.09699 -13.58388 -13.24933 -12.93339 -12.76243 -12.66825 -12.53493 -12.37547 -12.18848 -11.97148 -11.81829 -11.73826 -11.43935 -11.37739 -11.31388 -10.78331 -10.69906 -9.15496 -8.92249 -8.28212 -6.30339 1.31442 1.34933 1.45329 2.33698 2.79722 2.98576 3.05407 3.34831 3.70368 3.97271 4.02150 4.06268 4.14943 4.20858 4.24554 4.36189 4.52095 4.52281 4.62783 4.69320 4.74798 4.80222 4.84549 4.88129 4.98543 5.06031 5.07041 5.22545 5.28802 5.29567 5.43914 5.57661 6.01303 6.11245 6.39198 6.44534 6.69080 6.76087 7.04834 7.32761 8.88776 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.005787 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.866910 B = 4837.156835 C = 5750.855356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.053 3.947 3 N -0.531 5.531 4 C 0.173 3.827 5 C -0.512 4.512 6 H 0.036 0.964 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.253 1.253 13 C 0.024 3.976 14 C 0.121 3.879 15 H 0.067 0.933 16 O -0.559 6.559 17 C 0.044 3.956 18 N -0.672 5.672 19 C 0.012 3.988 20 C -0.196 4.196 21 C -0.180 4.180 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.024 0.976 28 H -0.018 1.018 29 H 0.266 0.734 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.378 0.622 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.349 0.651 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 8.664 19.013 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 N -0.256 5.256 4 C 0.046 3.954 5 C -0.550 4.550 6 H 0.055 0.945 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.768 3.232 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.177 1.177 13 C -0.105 4.105 14 C 0.061 3.939 15 H 0.085 0.915 16 O -0.364 6.364 17 C -0.086 4.086 18 N -0.303 5.303 19 C -0.098 4.098 20 C -0.234 4.234 21 C -0.219 4.219 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.000 1.000 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.226 0.774 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.169 0.831 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.762 9.075 18.168 22.118 hybrid contribution 0.167 -0.724 0.644 0.984 sum -8.595 8.351 18.813 22.305 Atomic orbital electron populations 1.21681 0.93262 1.01806 1.01989 1.22015 0.96940 0.88916 0.99652 1.61763 1.18573 1.17339 1.27881 1.19923 0.86158 0.95227 0.94114 1.21268 0.93486 1.43498 0.96783 0.94536 1.25828 1.02258 0.94969 0.95887 1.70049 1.24693 1.50040 1.14190 0.85754 0.78800 0.79563 0.79073 1.19003 1.20626 1.17684 1.22852 1.02154 0.95315 0.90190 1.21776 0.91408 0.91544 0.89176 0.91476 1.86690 1.17510 1.84914 1.47300 1.22531 1.01810 0.87582 0.96637 1.60039 1.56347 1.05262 1.08682 1.22520 1.04410 0.90214 0.92671 1.23467 0.93125 1.02891 1.03936 1.23172 0.96097 0.99383 1.03213 0.93586 0.91275 0.91274 0.93311 0.95267 0.95786 0.99997 0.92478 0.88380 0.94433 0.77438 0.92372 0.89978 0.83050 0.86442 0.88869 0.87254 0.87516 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 10.00 71.98 0.72 -3.02 16 2 C 0.05 1.99 5.52 86.30 0.48 2.47 16 3 N -0.53 -21.84 4.27 -900.80 -3.85 -25.69 16 4 C 0.17 8.57 3.62 85.56 0.31 8.88 16 5 C -0.51 -30.71 8.84 25.60 0.23 -30.49 16 6 H 0.04 2.45 7.50 -2.91 -0.02 2.42 16 7 C 0.01 0.46 5.47 84.66 0.46 0.92 16 8 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 9 Si 0.94 45.67 27.47 68.60 1.88 47.55 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 13 C 0.02 0.72 4.51 86.30 0.39 1.11 16 14 C 0.12 3.57 3.31 30.59 0.10 3.68 16 15 H 0.07 2.54 6.76 -2.39 -0.02 2.52 16 16 O -0.56 -17.01 12.57 -148.98 -1.87 -18.89 16 17 C 0.04 0.95 5.20 86.30 0.45 1.39 16 18 N -0.67 -15.09 6.78 -491.61 -3.33 -18.42 16 19 C 0.01 0.22 6.31 44.91 0.28 0.50 16 20 C -0.20 -2.90 10.23 30.62 0.31 -2.58 16 21 C -0.18 -3.09 10.46 30.62 0.32 -2.77 16 22 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.61 6.51 -2.39 -0.02 1.60 16 25 H 0.05 2.23 6.59 -2.38 -0.02 2.21 16 26 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 27 H 0.02 1.22 5.68 -2.38 -0.01 1.21 16 28 H -0.02 -0.85 7.55 -2.39 -0.02 -0.87 16 29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.10 2.34 6.24 -2.39 -0.01 2.33 16 31 H 0.04 1.12 8.00 -2.39 -0.02 1.10 16 32 H 0.38 7.93 9.03 -74.05 -0.67 7.26 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.35 7.84 7.91 -89.69 -0.71 7.13 16 36 H 0.12 1.82 7.90 -2.39 -0.02 1.80 16 37 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -71.37 320.37 -3.23 -74.60 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.41 Total: 21.45 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.05 Total: -19.91 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -6.88 Total: -104.80 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.87 Total: -18.89 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -71.37 -3.23 -74.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.637 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds