Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46792 * 2 1 4 4 C 1.50696 * 109.47599 * 239.99935 * 2 1 3 5 5 H 1.07997 * 120.00358 * 239.99537 * 4 2 1 6 6 C 1.37882 * 119.99816 * 59.99718 * 4 2 1 7 7 N 1.31506 * 120.00146 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47064 * 89.99855 * 8 6 4 10 10 H 1.48497 * 109.47255 * 210.00264 * 8 6 4 11 11 H 1.48502 * 109.46861 * 330.00069 * 8 6 4 12 12 N 1.46903 * 109.47185 * 119.99790 * 2 1 3 13 13 C 1.46907 * 110.99750 * 275.00306 * 12 2 1 14 14 C 1.53001 * 109.46610 * 185.33221 * 13 12 2 15 15 H 1.09003 * 109.46964 * 64.14102 * 14 13 12 16 16 C 1.52999 * 109.46870 * 184.13561 * 14 13 12 17 17 N 1.46893 * 109.47349 * 304.13737 * 14 13 12 18 18 C 1.47013 * 110.99904 * 299.95216 * 17 14 13 19 19 C 1.53099 * 109.29199 * 177.63172 * 18 17 14 20 20 O 1.43018 * 109.26051 * 56.82725 * 19 18 17 21 21 C 1.43017 * 113.73902 * 301.32934 * 20 19 18 22 22 C 1.47018 * 111.03596 * 176.29349 * 17 14 13 23 23 H 1.08998 * 109.47516 * 300.00065 * 1 2 3 24 24 H 1.09001 * 109.46911 * 60.00239 * 1 2 3 25 25 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00770 * 180.02562 * 7 6 4 27 27 H 1.00891 * 110.99829 * 38.95572 * 12 2 1 28 28 H 1.08997 * 109.47073 * 65.33496 * 13 12 2 29 29 H 1.08999 * 109.47123 * 305.33199 * 13 12 2 30 30 H 1.08997 * 109.47574 * 59.99962 * 16 14 13 31 31 H 1.08998 * 109.47185 * 180.02562 * 16 14 13 32 32 H 1.09003 * 109.47677 * 300.00352 * 16 14 13 33 33 H 1.08997 * 109.50631 * 57.67504 * 18 17 14 34 34 H 1.09000 * 109.50807 * 297.58262 * 18 17 14 35 35 H 1.09001 * 109.50774 * 176.75810 * 19 18 17 36 36 H 1.09000 * 109.50527 * 296.84760 * 19 18 17 37 37 H 1.08996 * 109.50805 * 178.60350 * 21 20 19 38 38 H 1.09005 * 109.50498 * 298.69403 * 21 20 19 39 39 H 1.09007 * 109.46972 * 62.41390 * 22 17 14 40 40 H 1.09005 * 109.54435 * 302.32879 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.7193 -0.4959 3.5381 15 1 3.7518 -0.7507 3.2988 16 6 2.6911 0.4219 4.7619 17 7 1.9667 -1.7233 3.8290 18 6 0.5669 -1.4176 4.1578 19 6 -0.1940 -2.7246 4.3956 20 8 0.4556 -3.4670 5.4311 21 6 1.8203 -3.7835 5.1432 22 6 2.6016 -2.4872 4.9130 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1613 -3.4844 27 1 1.4496 -1.4978 1.4100 28 1 1.0747 0.5426 2.6121 29 1 2.6828 1.0938 2.0846 30 1 1.6587 0.6769 5.0011 31 1 3.1452 -0.0898 5.6104 32 1 3.2495 1.3328 4.5460 33 1 0.1089 -0.8751 3.3308 34 1 0.5300 -0.8059 5.0593 35 1 -1.2176 -2.5005 4.6959 36 1 -0.2043 -3.3120 3.4774 37 1 2.2535 -4.3251 5.9841 38 1 1.8692 -4.4026 4.2474 39 1 2.5979 -1.8928 5.8267 40 1 3.6291 -2.7254 4.6379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068610040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -38.434253 kcal Electronic energy + Delta-G solvation = -18593.403537 eV Core-core repulsion = 15829.204166 eV Total energy + Delta-G solvation = -2764.199371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80400 -37.09567 -35.17928 -32.47599 -31.14445 -30.95091 -28.22987 -26.47680 -25.14166 -24.34223 -23.80985 -21.21601 -20.06603 -19.31166 -16.60433 -16.38198 -15.98122 -15.19961 -15.04634 -14.83818 -14.64375 -14.29780 -13.98120 -13.32629 -12.97817 -12.62977 -12.22284 -12.20711 -11.86496 -11.59158 -11.46304 -11.24591 -11.14071 -10.90672 -10.78733 -10.47264 -10.39361 -10.32947 -10.07094 -9.77396 -9.60582 -8.92935 -8.31091 -8.14658 -7.06188 -5.93041 -3.95568 3.36037 3.42115 3.47259 3.79689 3.95939 4.48854 4.87094 4.97880 5.00618 5.14796 5.18534 5.27679 5.37606 5.38659 5.42730 5.56896 5.64768 5.78036 5.80325 5.84156 5.91227 5.93961 5.99209 6.17761 6.32624 6.46749 6.73417 6.89122 7.07733 7.16224 7.18089 7.19422 7.46245 7.80624 7.96648 8.36329 8.69585 8.76566 9.12892 9.69808 11.14065 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031050 B = 0.005547 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.563138 B = 5047.009146 C = 5247.433575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.209 3.791 3 H 0.030 0.970 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.675 5.675 13 C 0.070 3.930 14 C 0.085 3.915 15 H 0.090 0.910 16 C -0.186 4.186 17 N -0.519 5.519 18 C 0.012 3.988 19 C 0.064 3.936 20 O -0.390 6.390 21 C 0.064 3.936 22 C 0.018 3.982 23 H 0.002 0.998 24 H 0.087 0.913 25 H 0.027 0.973 26 H 0.258 0.742 27 H 0.334 0.666 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -4.277 15.342 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.102 3.898 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.061 4.061 14 C -0.024 4.024 15 H 0.108 0.892 16 C -0.245 4.245 17 N -0.243 5.243 18 C -0.117 4.117 19 C -0.013 4.013 20 O -0.309 6.309 21 C -0.013 4.013 22 C -0.111 4.111 23 H 0.021 0.979 24 H 0.106 0.894 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.152 0.848 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.026 -4.431 14.762 15.447 hybrid contribution -0.571 0.438 -0.202 0.747 sum 0.456 -3.993 14.560 15.105 Atomic orbital electron populations 1.22422 1.00989 0.99027 1.00204 1.19181 0.89400 0.94294 0.86963 0.95242 1.21186 1.29869 1.12260 0.89626 0.91967 1.24953 0.95459 0.95222 0.99010 1.69883 1.37613 1.23292 1.23196 0.86526 0.79244 0.79226 0.82549 1.20899 1.21465 1.19906 1.60641 1.58449 1.08864 1.02640 1.21916 0.97448 0.95740 0.91015 1.21852 0.98772 0.87912 0.93840 0.89226 1.22451 1.01989 1.00904 0.99158 1.62348 1.01444 1.21092 1.39458 1.22846 0.90329 0.97707 1.00779 1.22675 0.95699 0.91522 0.91439 1.87937 1.24798 1.74501 1.43656 1.22650 0.81777 0.95576 1.01330 1.22762 0.99295 0.95576 0.93450 0.97931 0.89430 0.95430 0.93190 0.84759 0.96759 0.91523 0.92628 0.92778 0.91867 0.89286 0.94065 0.88841 0.91971 0.88960 0.92113 0.94175 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.94 37.16 0.33 -3.72 16 2 C 0.21 5.31 2.57 -68.87 -0.18 5.14 16 3 H 0.03 0.82 7.71 -51.92 -0.40 0.42 16 4 C -0.49 -13.77 8.84 -34.44 -0.30 -14.07 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -26.02 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.68 -14.44 6.18 -107.95 -0.67 -15.10 16 13 C 0.07 1.23 4.56 -3.82 -0.02 1.21 16 14 C 0.08 1.22 2.67 -67.72 -0.18 1.04 16 15 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.19 -2.24 8.49 37.16 0.32 -1.92 16 17 N -0.52 -7.21 3.94 -226.33 -0.89 -8.10 16 18 C 0.01 0.15 4.82 -3.71 -0.02 0.14 16 19 C 0.06 0.79 7.01 37.21 0.26 1.05 16 20 O -0.39 -5.13 10.83 -35.23 -0.38 -5.51 16 21 C 0.06 0.72 7.01 37.21 0.26 0.98 16 22 C 0.02 0.21 5.29 -3.71 -0.02 0.19 16 23 H 0.00 0.04 7.56 -51.93 -0.39 -0.36 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 25 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.33 7.03 7.76 -39.30 -0.31 6.73 16 28 H 0.01 0.26 6.01 -51.93 -0.31 -0.06 16 29 H 0.07 1.23 7.92 -51.93 -0.41 0.81 16 30 H 0.05 0.68 6.46 -51.93 -0.34 0.34 16 31 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.30 6.28 -51.93 -0.33 0.97 16 34 H 0.04 0.53 6.44 -51.93 -0.33 0.20 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.46 6.53 -51.93 -0.34 0.12 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -29.11 305.15 -8.11 -37.23 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.74 Total: 4.09 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 0.36 Total: -8.56 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.93 Total: -48.59 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.11 -8.11 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068610040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.208 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds