Wall clock time and date at job start Mon Mar 30 2020 03:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46792 * 2 1 4 4 C 1.50696 * 109.47599 * 239.99935 * 2 1 3 5 5 H 1.07997 * 120.00358 * 239.99537 * 4 2 1 6 6 C 1.37882 * 119.99816 * 59.99718 * 4 2 1 7 7 N 1.31506 * 120.00146 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99959 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47064 * 89.99855 * 8 6 4 10 10 H 1.48497 * 109.47255 * 210.00264 * 8 6 4 11 11 H 1.48502 * 109.46861 * 330.00069 * 8 6 4 12 12 N 1.46903 * 109.47185 * 119.99790 * 2 1 3 13 13 C 1.46907 * 110.99750 * 275.00306 * 12 2 1 14 14 C 1.53001 * 109.46610 * 185.33221 * 13 12 2 15 15 H 1.09003 * 109.46964 * 64.14102 * 14 13 12 16 16 C 1.52999 * 109.46870 * 184.13561 * 14 13 12 17 17 N 1.46893 * 109.47349 * 304.13737 * 14 13 12 18 18 C 1.47013 * 110.99904 * 299.95216 * 17 14 13 19 19 C 1.53099 * 109.29199 * 177.63172 * 18 17 14 20 20 O 1.43018 * 109.26051 * 56.82725 * 19 18 17 21 21 C 1.43017 * 113.73902 * 301.32934 * 20 19 18 22 22 C 1.47018 * 111.03596 * 176.29349 * 17 14 13 23 23 H 1.08998 * 109.47516 * 300.00065 * 1 2 3 24 24 H 1.09001 * 109.46911 * 60.00239 * 1 2 3 25 25 H 1.09000 * 109.46947 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00770 * 180.02562 * 7 6 4 27 27 H 1.00891 * 110.99829 * 38.95572 * 12 2 1 28 28 H 1.08997 * 109.47073 * 65.33496 * 13 12 2 29 29 H 1.08999 * 109.47123 * 305.33199 * 13 12 2 30 30 H 1.08997 * 109.47574 * 59.99962 * 16 14 13 31 31 H 1.08998 * 109.47185 * 180.02562 * 16 14 13 32 32 H 1.09003 * 109.47677 * 300.00352 * 16 14 13 33 33 H 1.08997 * 109.50631 * 57.67504 * 18 17 14 34 34 H 1.09000 * 109.50807 * 297.58262 * 18 17 14 35 35 H 1.09001 * 109.50774 * 176.75810 * 19 18 17 36 36 H 1.09000 * 109.50527 * 296.84760 * 19 18 17 37 37 H 1.08996 * 109.50805 * 178.60350 * 21 20 19 38 38 H 1.09005 * 109.50498 * 298.69403 * 21 20 19 39 39 H 1.09007 * 109.46972 * 62.41390 * 22 17 14 40 40 H 1.09005 * 109.54435 * 302.32879 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6295 -1.7582 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.7193 -0.4959 3.5381 15 1 3.7518 -0.7507 3.2988 16 6 2.6911 0.4219 4.7619 17 7 1.9667 -1.7233 3.8290 18 6 0.5669 -1.4176 4.1578 19 6 -0.1940 -2.7246 4.3956 20 8 0.4556 -3.4670 5.4311 21 6 1.8203 -3.7835 5.1432 22 6 2.6016 -2.4872 4.9130 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1613 -3.4844 27 1 1.4496 -1.4978 1.4100 28 1 1.0747 0.5426 2.6121 29 1 2.6828 1.0938 2.0846 30 1 1.6587 0.6769 5.0011 31 1 3.1452 -0.0898 5.6104 32 1 3.2495 1.3328 4.5460 33 1 0.1089 -0.8751 3.3308 34 1 0.5300 -0.8059 5.0593 35 1 -1.2176 -2.5005 4.6959 36 1 -0.2043 -3.3120 3.4774 37 1 2.2535 -4.3251 5.9841 38 1 1.8692 -4.4026 4.2474 39 1 2.5979 -1.8928 5.8267 40 1 3.6291 -2.7254 4.6379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068610040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:52 Heat of formation + Delta-G solvation = -59.364088 kcal Electronic energy + Delta-G solvation = -18594.311123 eV Core-core repulsion = 15829.204166 eV Total energy + Delta-G solvation = -2765.106957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84827 -38.38506 -36.81476 -34.33477 -32.34018 -32.07564 -29.92474 -27.48334 -27.23193 -25.77094 -24.87482 -22.34014 -22.04558 -20.41363 -18.34891 -17.65964 -17.08419 -16.73863 -16.44312 -16.03846 -15.81571 -15.63211 -15.24915 -14.91514 -14.32419 -14.24224 -13.76562 -13.26154 -13.20729 -12.97295 -12.91041 -12.77484 -12.69980 -12.51307 -12.23220 -12.19226 -12.04228 -11.77074 -11.53782 -11.38364 -10.98055 -10.61656 -10.46524 -9.20204 -8.81201 -8.07270 -6.18021 1.43904 1.44272 1.55669 2.45907 2.79767 3.00740 3.20766 3.62149 3.93968 4.02341 4.08155 4.18351 4.27532 4.33695 4.38086 4.46673 4.59307 4.65013 4.71258 4.76211 4.79959 4.81611 4.89323 4.91240 4.94623 5.06353 5.10757 5.16235 5.28719 5.46761 5.72002 5.85290 6.07733 6.10870 6.21577 6.32003 6.74283 6.92546 7.04239 7.52472 8.98174 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031050 B = 0.005547 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.563138 B = 5047.009146 C = 5247.433575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.214 3.786 3 H -0.002 1.002 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.677 5.677 13 C 0.072 3.928 14 C 0.093 3.907 15 H 0.083 0.917 16 C -0.176 4.176 17 N -0.535 5.535 18 C 0.016 3.984 19 C 0.065 3.935 20 O -0.401 6.401 21 C 0.062 3.938 22 C 0.020 3.980 23 H 0.022 0.978 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.337 0.663 28 H 0.016 0.984 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -5.126 16.402 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.307 5.307 13 C -0.058 4.058 14 C -0.015 4.015 15 H 0.101 0.899 16 C -0.236 4.236 17 N -0.260 5.260 18 C -0.112 4.112 19 C -0.012 4.012 20 O -0.320 6.320 21 C -0.015 4.015 22 C -0.108 4.108 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.370 -5.287 15.844 16.759 hybrid contribution -0.668 0.708 -0.491 1.090 sum 0.702 -4.578 15.353 16.037 Atomic orbital electron populations 1.22207 1.00211 0.98964 0.99782 1.18950 0.89880 0.92537 0.88080 0.98425 1.21466 1.30177 1.12291 0.91140 0.92910 1.25715 0.95552 0.95885 1.01864 1.70007 1.38250 1.24310 1.23885 0.85529 0.78779 0.78215 0.78904 1.20138 1.20978 1.19586 1.60520 1.58059 1.09317 1.02823 1.21945 0.97707 0.95192 0.90992 1.21655 0.97923 0.88558 0.93376 0.89870 1.22349 1.02258 1.00647 0.98297 1.62304 1.01823 1.20925 1.40970 1.22781 0.90036 0.98120 1.00261 1.22700 0.96484 0.90848 0.91142 1.87928 1.25693 1.74504 1.43840 1.22799 0.81074 0.95400 1.02205 1.22811 0.99581 0.95504 0.92926 0.95899 0.92162 0.95164 0.93083 0.84456 0.96553 0.92679 0.92640 0.91195 0.91377 0.90948 0.93445 0.87139 0.92910 0.86404 0.92787 0.93425 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.43 8.94 71.98 0.64 -6.79 16 2 C 0.21 11.06 2.57 44.17 0.11 11.17 16 3 H 0.00 -0.13 7.71 -2.38 -0.02 -0.14 16 4 C -0.51 -29.06 8.84 25.60 0.23 -28.84 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.43 5.30 84.66 0.45 0.88 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 N -0.68 -29.06 6.18 -495.44 -3.06 -32.12 16 13 C 0.07 2.53 4.56 86.30 0.39 2.92 16 14 C 0.09 2.58 2.67 44.92 0.12 2.70 16 15 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 16 C -0.18 -3.88 8.49 71.98 0.61 -3.27 16 17 N -0.54 -14.09 3.94 -869.97 -3.42 -17.52 16 18 C 0.02 0.41 4.82 86.31 0.42 0.82 16 19 C 0.07 1.52 7.01 72.02 0.50 2.03 16 20 O -0.40 -9.71 10.83 -148.98 -1.61 -11.32 16 21 C 0.06 1.26 7.01 72.01 0.50 1.76 16 22 C 0.02 0.42 5.29 86.31 0.46 0.87 16 23 H 0.02 0.97 7.56 -2.39 -0.02 0.96 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 25 H 0.03 1.41 8.13 -2.39 -0.02 1.39 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.34 14.14 7.76 -89.70 -0.70 13.45 16 28 H 0.02 0.57 6.01 -2.39 -0.01 0.56 16 29 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 30 H 0.05 1.23 6.46 -2.39 -0.02 1.22 16 31 H 0.07 1.34 6.54 -2.39 -0.02 1.32 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 2.05 6.28 -2.39 -0.01 2.04 16 34 H 0.05 1.13 6.44 -2.39 -0.02 1.12 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.05 0.96 6.53 -2.38 -0.02 0.94 16 40 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -61.56 305.15 -1.07 -62.64 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.31 Total: 21.12 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 4.44 Total: -15.74 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -6.24 Total: -103.40 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -1.61 Total: -11.32 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.56 -1.07 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068610040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.272 kcal (2) G-P(sol) polarization free energy of solvation -61.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds