Wall clock time and date at job start Mon Mar 30 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47501 * 2 1 4 4 C 1.50704 * 109.47054 * 240.00388 * 2 1 3 5 5 H 1.08002 * 120.00195 * 239.99660 * 4 2 1 6 6 C 1.37875 * 120.00073 * 59.99799 * 4 2 1 7 7 N 1.31512 * 120.00397 * 179.72813 * 6 4 2 8 8 Si 1.86810 * 119.99774 * 359.97438 * 6 4 2 9 9 H 1.48491 * 109.47300 * 269.72488 * 8 6 4 10 10 H 1.48502 * 109.47055 * 29.72857 * 8 6 4 11 11 H 1.48502 * 109.47032 * 149.72306 * 8 6 4 12 12 N 1.46898 * 109.47381 * 120.00655 * 2 1 3 13 13 C 1.46901 * 110.99735 * 274.99564 * 12 2 1 14 14 C 1.52998 * 109.47216 * 174.83118 * 13 12 2 15 15 H 1.08997 * 109.47304 * 185.86238 * 14 13 12 16 16 C 1.53002 * 109.46953 * 65.86659 * 14 13 12 17 17 N 1.46894 * 109.47411 * 305.86674 * 14 13 12 18 18 C 1.47010 * 111.00097 * 302.03879 * 17 14 13 19 19 C 1.53094 * 109.26262 * 177.60805 * 18 17 14 20 20 O 1.43014 * 109.25981 * 56.84427 * 19 18 17 21 21 C 1.43011 * 113.73784 * 301.33217 * 20 19 18 22 22 C 1.47017 * 111.00334 * 178.40154 * 17 14 13 23 23 H 1.09007 * 109.47132 * 299.99330 * 1 2 3 24 24 H 1.08996 * 109.47353 * 59.99547 * 1 2 3 25 25 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00377 * 180.27935 * 7 6 4 27 27 H 1.00903 * 111.00538 * 151.04976 * 12 2 1 28 28 H 1.08998 * 109.47344 * 294.83716 * 13 12 2 29 29 H 1.09004 * 109.47141 * 54.83433 * 13 12 2 30 30 H 1.09006 * 109.46784 * 299.99770 * 16 14 13 31 31 H 1.09002 * 109.47485 * 59.99826 * 16 14 13 32 32 H 1.09001 * 109.47631 * 180.02562 * 16 14 13 33 33 H 1.09001 * 109.50675 * 297.53854 * 18 17 14 34 34 H 1.09002 * 109.51117 * 57.66942 * 18 17 14 35 35 H 1.09004 * 109.50526 * 296.90806 * 19 18 17 36 36 H 1.09005 * 109.54789 * 176.80582 * 19 18 17 37 37 H 1.09000 * 109.51147 * 298.73200 * 21 20 19 38 38 H 1.09002 * 109.54176 * 178.62610 * 21 20 19 39 39 H 1.08992 * 109.50651 * 302.32667 * 22 17 14 40 40 H 1.09000 * 109.50690 * 62.45857 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 2.1419 -0.8560 -3.5566 8 14 0.6245 1.2792 -2.6540 9 1 -0.8026 0.8723 -2.7064 10 1 0.8419 2.1735 -1.4885 11 1 0.9802 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 2.4717 -0.5603 3.6025 15 1 2.4172 0.0959 4.4711 16 6 3.8995 -1.0891 3.4518 17 7 1.5482 -1.6883 3.7823 18 6 0.1581 -1.2204 3.8824 19 6 -0.7736 -2.4286 4.0085 20 8 -0.3824 -3.2098 5.1408 21 6 0.9657 -3.6826 5.0760 22 6 1.9151 -2.4871 4.9608 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9109 -0.5221 -4.4376 27 1 2.9174 -1.1206 1.0286 28 1 2.8270 0.9952 2.1550 29 1 1.1074 0.6863 2.4955 30 1 3.9540 -1.7454 2.5831 31 1 4.5849 -0.2521 3.3183 32 1 4.1767 -1.6471 4.3461 33 1 0.0505 -0.5846 4.7612 34 1 -0.1003 -0.6532 2.9882 35 1 -0.7059 -3.0362 3.1061 36 1 -1.7999 -2.0856 4.1400 37 1 1.0841 -4.3267 4.2046 38 1 1.1983 -4.2463 5.9795 39 1 2.9392 -2.8445 4.8537 40 1 1.8356 -1.8715 5.8568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068610044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:58 Heat of formation + Delta-G solvation = -29.259715 kcal Electronic energy + Delta-G solvation = -18741.990081 eV Core-core repulsion = 15978.188548 eV Total energy + Delta-G solvation = -2763.801533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60916 -37.15917 -35.21225 -32.56272 -31.36781 -31.03515 -28.71856 -26.52733 -25.62869 -24.58296 -23.25337 -20.85725 -20.09797 -19.33341 -16.91297 -16.51742 -15.95826 -15.59666 -14.91147 -14.86917 -14.75337 -14.12491 -13.86888 -13.29862 -13.21178 -12.78389 -12.70814 -12.23189 -11.94502 -11.73015 -11.67577 -11.28126 -11.23895 -11.02820 -10.83542 -10.63244 -10.34666 -10.16649 -10.04236 -9.56235 -9.44543 -8.98918 -8.58963 -8.05588 -7.32291 -6.07909 -4.07049 3.27402 3.36499 3.39039 3.85072 4.00585 4.39763 4.90499 5.02711 5.10312 5.14129 5.23628 5.26032 5.26711 5.41233 5.44461 5.59500 5.63518 5.74674 5.81238 5.91563 5.99188 6.02565 6.07957 6.10636 6.23296 6.40522 6.44238 6.58054 6.75636 6.82614 7.16137 7.25360 7.29755 7.43022 7.62508 8.01771 8.44710 8.67453 8.98297 9.54950 11.05212 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.006216 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.336777 B = 4503.772433 C = 4794.102842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 H -0.004 1.004 4 C -0.516 4.516 5 H 0.078 0.922 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.270 1.270 11 H -0.299 1.299 12 N -0.658 5.658 13 C 0.062 3.938 14 C 0.087 3.913 15 H 0.033 0.967 16 C -0.148 4.148 17 N -0.504 5.504 18 C 0.023 3.977 19 C 0.065 3.935 20 O -0.393 6.393 21 C 0.065 3.935 22 C 0.014 3.986 23 H 0.022 0.978 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.264 0.736 27 H 0.339 0.661 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 -0.587 16.806 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.071 3.929 3 H 0.013 0.987 4 C -0.554 4.554 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.227 1.227 12 N -0.290 5.290 13 C -0.069 4.069 14 C -0.021 4.021 15 H 0.051 0.949 16 C -0.206 4.206 17 N -0.230 5.230 18 C -0.105 4.105 19 C -0.012 4.012 20 O -0.312 6.312 21 C -0.012 4.012 22 C -0.115 4.115 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.158 0.842 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.984 -1.176 16.506 16.667 hybrid contribution 0.272 2.029 -0.008 2.047 sum -1.712 0.853 16.499 16.609 Atomic orbital electron populations 1.22053 0.98910 1.00899 0.97304 1.19519 0.91653 0.92769 0.88917 0.98687 1.21111 1.32038 1.13644 0.88581 0.90373 1.24937 0.95748 0.96658 0.95808 1.69891 1.45659 1.40350 0.97897 0.86804 0.80705 0.83647 0.76634 1.20593 1.19516 1.22653 1.60397 1.33129 1.31509 1.03948 1.21995 0.99530 0.93700 0.91628 1.21673 0.92755 0.91038 0.96653 0.94937 1.21896 0.94701 1.01459 1.02521 1.62075 1.01564 1.22203 1.37130 1.22752 0.89141 0.97219 1.01392 1.22665 0.97469 0.91829 0.89235 1.87918 1.29038 1.70489 1.43720 1.22614 0.81518 0.95020 1.02015 1.22848 1.00417 0.96238 0.91969 0.95941 0.94749 0.92283 0.92651 0.84171 0.95807 0.91998 0.90748 0.92492 0.93003 0.95380 0.88385 0.91664 0.89019 0.92091 0.89152 0.89574 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.88 37.16 0.33 -2.63 16 2 C 0.18 4.23 2.19 -68.87 -0.15 4.08 16 3 H 0.00 -0.11 6.91 -51.93 -0.36 -0.47 16 4 C -0.52 -14.37 9.17 -34.44 -0.32 -14.68 16 5 H 0.08 2.36 7.86 -52.49 -0.41 1.94 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 8 Si 0.89 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.79 6.88 56.52 0.39 -6.40 16 10 H -0.27 -6.48 6.52 56.52 0.37 -6.11 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 N -0.66 -13.04 5.96 -107.95 -0.64 -13.68 16 13 C 0.06 1.02 4.51 -3.82 -0.02 1.00 16 14 C 0.09 1.21 2.44 -67.72 -0.17 1.05 16 15 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 16 C -0.15 -1.87 8.70 37.16 0.32 -1.54 16 17 N -0.50 -7.13 4.30 -226.34 -0.97 -8.11 16 18 C 0.02 0.32 5.29 -3.72 -0.02 0.30 16 19 C 0.06 0.86 7.01 37.21 0.26 1.12 16 20 O -0.39 -5.43 10.83 -35.23 -0.38 -5.82 16 21 C 0.07 0.77 7.01 37.21 0.26 1.03 16 22 C 0.01 0.16 5.30 -3.71 -0.02 0.14 16 23 H 0.02 0.42 7.39 -51.93 -0.38 0.04 16 24 H 0.03 0.79 3.28 -51.93 -0.17 0.62 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.34 6.89 6.70 -39.29 -0.26 6.62 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.02 5.85 -51.93 -0.30 0.72 16 30 H 0.07 1.05 6.82 -51.93 -0.35 0.70 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.57 6.32 -51.93 -0.33 0.24 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 1.50 6.27 -51.93 -0.33 1.17 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.94 6.15 -51.93 -0.32 0.62 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -30.04 299.15 -7.10 -37.13 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.63 Total: 2.84 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 0.39 Total: -8.19 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.84 Total: -48.50 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.38 Total: -5.82 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.04 -7.10 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068610044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.874 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds