Wall clock time and date at job start Mon Mar 30 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47501 * 2 1 4 4 C 1.50704 * 109.47054 * 240.00388 * 2 1 3 5 5 H 1.08002 * 120.00195 * 239.99660 * 4 2 1 6 6 C 1.37875 * 120.00073 * 59.99799 * 4 2 1 7 7 N 1.31512 * 120.00397 * 179.72813 * 6 4 2 8 8 Si 1.86810 * 119.99774 * 359.97438 * 6 4 2 9 9 H 1.48491 * 109.47300 * 269.72488 * 8 6 4 10 10 H 1.48502 * 109.47055 * 29.72857 * 8 6 4 11 11 H 1.48502 * 109.47032 * 149.72306 * 8 6 4 12 12 N 1.46898 * 109.47381 * 120.00655 * 2 1 3 13 13 C 1.46901 * 110.99735 * 274.99564 * 12 2 1 14 14 C 1.52998 * 109.47216 * 174.83118 * 13 12 2 15 15 H 1.08997 * 109.47304 * 185.86238 * 14 13 12 16 16 C 1.53002 * 109.46953 * 65.86659 * 14 13 12 17 17 N 1.46894 * 109.47411 * 305.86674 * 14 13 12 18 18 C 1.47010 * 111.00097 * 302.03879 * 17 14 13 19 19 C 1.53094 * 109.26262 * 177.60805 * 18 17 14 20 20 O 1.43014 * 109.25981 * 56.84427 * 19 18 17 21 21 C 1.43011 * 113.73784 * 301.33217 * 20 19 18 22 22 C 1.47017 * 111.00334 * 178.40154 * 17 14 13 23 23 H 1.09007 * 109.47132 * 299.99330 * 1 2 3 24 24 H 1.08996 * 109.47353 * 59.99547 * 1 2 3 25 25 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00377 * 180.27935 * 7 6 4 27 27 H 1.00903 * 111.00538 * 151.04976 * 12 2 1 28 28 H 1.08998 * 109.47344 * 294.83716 * 13 12 2 29 29 H 1.09004 * 109.47141 * 54.83433 * 13 12 2 30 30 H 1.09006 * 109.46784 * 299.99770 * 16 14 13 31 31 H 1.09002 * 109.47485 * 59.99826 * 16 14 13 32 32 H 1.09001 * 109.47631 * 180.02562 * 16 14 13 33 33 H 1.09001 * 109.50675 * 297.53854 * 18 17 14 34 34 H 1.09002 * 109.51117 * 57.66942 * 18 17 14 35 35 H 1.09004 * 109.50526 * 296.90806 * 19 18 17 36 36 H 1.09005 * 109.54789 * 176.80582 * 19 18 17 37 37 H 1.09000 * 109.51147 * 298.73200 * 21 20 19 38 38 H 1.09002 * 109.54176 * 178.62610 * 21 20 19 39 39 H 1.08992 * 109.50651 * 302.32667 * 22 17 14 40 40 H 1.09000 * 109.50690 * 62.45857 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 2.1419 -0.8560 -3.5566 8 14 0.6245 1.2792 -2.6540 9 1 -0.8026 0.8723 -2.7064 10 1 0.8419 2.1735 -1.4885 11 1 0.9802 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 2.4717 -0.5603 3.6025 15 1 2.4172 0.0959 4.4711 16 6 3.8995 -1.0891 3.4518 17 7 1.5482 -1.6883 3.7823 18 6 0.1581 -1.2204 3.8824 19 6 -0.7736 -2.4286 4.0085 20 8 -0.3824 -3.2098 5.1408 21 6 0.9657 -3.6826 5.0760 22 6 1.9151 -2.4871 4.9608 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9109 -0.5221 -4.4376 27 1 2.9174 -1.1206 1.0286 28 1 2.8270 0.9952 2.1550 29 1 1.1074 0.6863 2.4955 30 1 3.9540 -1.7454 2.5831 31 1 4.5849 -0.2521 3.3183 32 1 4.1767 -1.6471 4.3461 33 1 0.0505 -0.5846 4.7612 34 1 -0.1003 -0.6532 2.9882 35 1 -0.7059 -3.0362 3.1061 36 1 -1.7999 -2.0856 4.1400 37 1 1.0841 -4.3267 4.2046 38 1 1.1983 -4.2463 5.9795 39 1 2.9392 -2.8445 4.8537 40 1 1.8356 -1.8715 5.8568 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068610044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:57 Heat of formation + Delta-G solvation = -52.742656 kcal Electronic energy + Delta-G solvation = -18743.008378 eV Core-core repulsion = 15978.188548 eV Total energy + Delta-G solvation = -2764.819830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66233 -38.46836 -36.73094 -34.41931 -32.75237 -32.16848 -30.22074 -27.63475 -27.27706 -26.21712 -24.32319 -22.04391 -21.75112 -20.56740 -18.82881 -17.79501 -17.28043 -16.97082 -16.11933 -15.97433 -15.84879 -15.56709 -15.35155 -14.95182 -14.64878 -14.27314 -14.04800 -13.94614 -13.26333 -13.01355 -12.71807 -12.63938 -12.61833 -12.55129 -12.25083 -12.20516 -11.95048 -11.47571 -11.36163 -11.28623 -11.00040 -10.76358 -10.56437 -9.10362 -8.93663 -8.29812 -6.33542 1.30672 1.34633 1.45246 2.31271 2.82506 3.03585 3.05716 3.60653 3.89298 4.02976 4.05943 4.18106 4.28050 4.38632 4.43278 4.47074 4.56873 4.64391 4.72057 4.74699 4.78323 4.83183 4.87358 4.90866 4.96703 5.02147 5.04785 5.08591 5.13862 5.40233 5.53997 5.67719 6.01662 6.15184 6.22536 6.28808 6.58281 6.72832 6.92344 7.33369 8.86766 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031371 B = 0.006216 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.336777 B = 4503.772433 C = 4794.102842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.185 3.815 3 H -0.010 1.010 4 C -0.519 4.519 5 H 0.039 0.961 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.252 1.252 11 H -0.299 1.299 12 N -0.656 5.656 13 C 0.062 3.938 14 C 0.093 3.907 15 H 0.049 0.951 16 C -0.144 4.144 17 N -0.524 5.524 18 C 0.027 3.973 19 C 0.067 3.933 20 O -0.404 6.404 21 C 0.062 3.938 22 C 0.017 3.983 23 H 0.054 0.946 24 H 0.027 0.973 25 H 0.050 0.950 26 H 0.266 0.734 27 H 0.334 0.666 28 H 0.025 0.975 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 0.569 18.940 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.076 3.924 3 H 0.007 0.993 4 C -0.557 4.557 5 H 0.057 0.943 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.176 1.176 11 H -0.227 1.227 12 N -0.288 5.288 13 C -0.068 4.068 14 C -0.016 4.016 15 H 0.067 0.933 16 C -0.202 4.202 17 N -0.250 5.250 18 C -0.102 4.102 19 C -0.010 4.010 20 O -0.323 6.323 21 C -0.015 4.015 22 C -0.111 4.111 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.711 -0.023 18.676 18.872 hybrid contribution 0.578 1.575 -0.618 1.788 sum -2.134 1.552 18.058 18.249 Atomic orbital electron populations 1.21936 0.97436 1.00777 0.98449 1.19363 0.92726 0.91860 0.88484 0.99268 1.21409 1.31077 1.12490 0.90736 0.94305 1.25792 0.97295 0.99950 0.95405 1.70040 1.47679 1.42521 0.98574 0.85787 0.79167 0.79923 0.77032 1.19362 1.17607 1.22719 1.60366 1.32863 1.31987 1.03560 1.22081 0.99868 0.93529 0.91302 1.21605 0.93194 0.91126 0.95637 0.93331 1.21859 0.94211 1.01548 1.02541 1.62060 1.01728 1.22538 1.38653 1.22679 0.89236 0.97328 1.00915 1.22669 0.98415 0.91373 0.88566 1.87906 1.30104 1.70561 1.43729 1.22776 0.80734 0.95035 1.02914 1.22874 1.00999 0.95948 0.91278 0.92755 0.95467 0.93130 0.92548 0.84797 0.95655 0.91688 0.92811 0.91762 0.91004 0.94623 0.89848 0.93369 0.87269 0.93118 0.86555 0.88453 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.88 71.98 0.64 -4.79 16 2 C 0.19 8.56 2.19 44.17 0.10 8.65 16 3 H -0.01 -0.48 6.91 -2.39 -0.02 -0.50 16 4 C -0.52 -29.48 9.17 25.60 0.23 -29.25 16 5 H 0.04 2.45 7.86 -2.91 -0.02 2.43 16 6 C 0.01 0.76 5.45 84.65 0.46 1.22 16 7 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 8 Si 0.95 45.30 24.37 68.60 1.67 46.97 16 9 H -0.27 -12.15 6.88 99.48 0.68 -11.47 16 10 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 12 N -0.66 -25.65 5.96 -495.46 -2.95 -28.61 16 13 C 0.06 1.93 4.51 86.30 0.39 2.32 16 14 C 0.09 2.36 2.44 44.92 0.11 2.47 16 15 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 16 C -0.14 -3.34 8.70 71.98 0.63 -2.72 16 17 N -0.52 -13.82 4.30 -870.01 -3.74 -17.56 16 18 C 0.03 0.69 5.29 86.31 0.46 1.15 16 19 C 0.07 1.67 7.01 72.01 0.50 2.18 16 20 O -0.40 -10.41 10.83 -148.98 -1.61 -12.03 16 21 C 0.06 1.34 7.01 72.02 0.50 1.85 16 22 C 0.02 0.36 5.30 86.31 0.46 0.82 16 23 H 0.05 1.93 7.39 -2.38 -0.02 1.92 16 24 H 0.03 1.18 3.28 -2.39 -0.01 1.17 16 25 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 27 H 0.33 13.70 6.70 -89.69 -0.60 13.10 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 1.98 5.85 -2.38 -0.01 1.97 16 30 H 0.05 1.48 6.82 -2.38 -0.02 1.46 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.37 6.32 -2.39 -0.02 1.35 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 2.39 6.27 -2.39 -0.01 2.38 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.10 1.86 6.15 -2.39 -0.01 1.85 16 40 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -64.67 299.15 -1.52 -66.19 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.33 Total: 20.21 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.48 Total: -16.11 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -6.39 Total: -105.24 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.61 Total: -12.03 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.97 kcal Total: -64.67 -1.52 -66.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068610044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.451 kcal (2) G-P(sol) polarization free energy of solvation -64.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds