Wall clock time and date at job start Mon Mar 30 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99881 * 2 1 4 4 C 1.52999 * 109.47113 * 175.28547 * 3 2 1 5 5 N 1.46895 * 109.47492 * 82.14293 * 4 3 2 6 6 C 1.46905 * 111.00237 * 168.46604 * 5 4 3 7 7 C 1.50699 * 109.47159 * 198.00764 * 6 5 4 8 8 H 1.08002 * 119.99810 * 4.51543 * 7 6 5 9 9 C 1.37873 * 120.00033 * 184.51751 * 7 6 5 10 10 N 1.31515 * 119.99969 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00165 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47381 * 59.99856 * 11 9 7 13 13 H 1.48497 * 109.47103 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46896 * 299.99909 * 11 9 7 15 15 C 1.46902 * 111.00253 * 292.42320 * 5 4 3 16 16 H 1.09004 * 110.67117 * 208.57826 * 15 5 4 17 17 C 1.54958 * 110.92000 * 331.88448 * 15 5 4 18 18 C 1.54264 * 104.16028 * 156.29764 * 17 15 5 19 19 C 1.53876 * 106.63928 * 336.44235 * 18 17 15 20 20 C 1.54262 * 106.59893 * 359.97438 * 19 18 17 21 21 H 1.09001 * 110.48384 * 264.93080 * 20 19 18 22 22 N 1.46893 * 110.49096 * 142.28688 * 20 19 18 23 23 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47378 * 300.00152 * 1 2 3 25 25 H 1.09005 * 109.47249 * 60.00342 * 1 2 3 26 26 H 1.08992 * 109.47558 * 55.28137 * 3 2 1 27 27 H 1.08999 * 109.47237 * 295.27991 * 3 2 1 28 28 H 1.09004 * 109.46877 * 322.14414 * 4 3 2 29 29 H 1.09001 * 109.47389 * 202.14735 * 4 3 2 30 30 H 1.08993 * 109.46780 * 318.00653 * 6 5 4 31 31 H 1.08998 * 109.47082 * 78.00877 * 6 5 4 32 32 H 0.96998 * 120.00349 * 179.97438 * 10 9 7 33 33 H 1.08995 * 110.48178 * 37.64016 * 17 15 5 34 34 H 1.09000 * 110.53210 * 274.97389 * 17 15 5 35 35 H 1.09008 * 110.03473 * 217.13844 * 18 17 15 36 36 H 1.08999 * 110.03563 * 95.75354 * 18 17 15 37 37 H 1.09000 * 110.03248 * 119.26175 * 19 18 17 38 38 H 1.08999 * 110.03614 * 240.69027 * 19 18 17 39 39 H 1.00904 * 111.00498 * 56.42758 * 22 20 19 40 40 H 1.00901 * 111.00542 * 180.38614 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 0.1186 5 7 4.1056 0.9142 -1.2056 6 6 5.5669 1.0634 -1.1862 7 6 6.0749 1.2175 -2.5966 8 1 5.3767 1.2791 -3.4183 9 6 7.4309 1.2799 -2.8380 10 7 8.2810 1.2055 -1.8373 11 14 8.0605 1.4717 -4.5862 12 1 7.5345 2.7334 -5.1663 13 1 9.5449 1.5121 -4.5760 14 1 7.6028 0.3213 -5.4061 15 6 3.7190 -0.4203 -1.6828 16 1 4.4799 -0.8258 -2.3496 17 6 3.4636 -1.3806 -0.4938 18 6 2.5235 -2.4575 -1.0736 19 6 1.8098 -1.8175 -2.2773 20 6 2.3403 -0.3732 -2.3872 21 1 1.6726 0.3185 -1.8734 22 7 2.4959 0.0116 -3.7963 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6233 1.8755 0.8446 27 1 1.7570 1.8159 -0.9292 28 1 3.7798 0.3711 0.7975 29 1 3.9392 2.1199 0.5067 30 1 5.8342 1.9460 -0.6053 31 1 6.0163 0.1800 -0.7327 32 1 9.2350 1.2490 -2.0071 33 1 2.9780 -0.8517 0.3262 34 1 4.3980 -1.8306 -0.1583 35 1 1.7926 -2.7586 -0.3230 36 1 3.1020 -3.3222 -1.3990 37 1 2.0426 -2.3711 -3.1869 38 1 0.7326 -1.8080 -2.1109 39 1 1.6267 -0.0933 -4.2980 40 1 2.8486 0.9534 -3.8772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070845082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:47 Heat of formation + Delta-G solvation = -20.834834 kcal Electronic energy + Delta-G solvation = -19424.410882 eV Core-core repulsion = 16660.974680 eV Total energy + Delta-G solvation = -2763.436203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.54979 -36.81019 -34.94518 -32.52353 -31.94483 -29.57615 -27.40464 -26.52354 -25.82773 -24.85239 -22.15159 -21.39029 -19.49289 -18.73569 -16.68056 -16.23629 -16.01152 -15.33230 -14.79333 -14.60798 -14.50099 -14.33827 -13.62471 -12.95888 -12.78055 -12.57945 -12.00183 -11.94828 -11.74953 -11.41371 -11.15037 -10.98497 -10.80922 -10.58666 -10.52783 -10.33339 -10.12558 -9.97910 -9.66458 -9.54988 -9.24284 -9.14068 -8.32413 -7.88250 -7.09634 -5.92371 -3.92446 3.41926 3.44761 3.49448 3.98397 4.51436 4.90542 5.12245 5.26948 5.28503 5.35699 5.42516 5.45186 5.54522 5.62856 5.68164 5.73032 5.82351 6.07515 6.10681 6.19889 6.26694 6.29353 6.38575 6.49273 6.57054 6.60320 6.82287 6.86486 7.14487 7.32722 7.43603 7.48378 7.87391 7.99957 8.11925 8.21804 8.34191 8.65780 9.17205 9.71505 11.18176 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.007580 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.474984 B = 3693.094657 C = 3995.840421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.365 6.365 3 C 0.059 3.941 4 C 0.044 3.956 5 N -0.529 5.529 6 C 0.194 3.806 7 C -0.497 4.497 8 H 0.066 0.934 9 C 0.053 3.947 10 N -0.903 5.903 11 Si 0.897 3.103 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.103 3.897 16 H 0.092 0.908 17 C -0.161 4.161 18 C -0.102 4.102 19 C -0.109 4.109 20 C 0.092 3.908 21 H 0.060 0.940 22 N -0.844 5.844 23 H 0.079 0.921 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.022 0.978 31 H -0.004 1.004 32 H 0.260 0.740 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.322 0.678 40 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 -2.687 3.359 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.284 6.284 3 C -0.017 4.017 4 C -0.085 4.085 5 N -0.253 5.253 6 C 0.069 3.931 7 C -0.536 4.536 8 H 0.084 0.916 9 C -0.147 4.147 10 N -0.544 5.544 11 Si 0.725 3.275 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.006 4.006 16 H 0.110 0.890 17 C -0.200 4.200 18 C -0.141 4.141 19 C -0.148 4.148 20 C -0.020 4.020 21 H 0.077 0.923 22 N -0.374 5.374 23 H 0.097 0.903 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.040 0.960 31 H 0.013 0.987 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.516 -3.074 3.037 15.145 hybrid contribution -0.109 0.461 -0.138 0.493 sum -14.625 -2.613 2.899 15.137 Atomic orbital electron populations 1.22691 0.83355 1.01990 0.99242 1.88285 1.17808 1.27598 1.94717 1.22683 0.94677 0.84563 0.99814 1.22306 0.91766 1.01039 0.93345 1.62268 1.14466 1.26922 1.21601 1.19728 0.79967 0.95761 0.97678 1.21157 0.91155 1.48408 0.92833 0.91551 1.24980 0.96957 0.95771 0.97042 1.69954 1.02187 1.51513 1.30709 0.86572 0.77191 0.78705 0.84991 1.20353 1.21646 1.20211 1.22537 0.95916 0.87521 0.94672 0.88980 1.23284 0.98226 0.97566 1.00913 1.21782 0.97924 0.97605 0.96755 1.22028 0.98127 0.96531 0.98104 1.22511 0.97001 0.94859 0.87589 0.92288 1.58705 1.33033 1.32696 1.12971 0.90281 0.94792 0.94701 0.93962 0.92404 0.93495 0.90489 0.96009 0.98654 0.93081 0.87874 0.93376 0.93046 0.93286 0.92102 0.93509 0.86782 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.49 101.05 1.06 1.31 16 2 O -0.36 -4.98 3.96 -35.23 -0.14 -5.12 16 3 C 0.06 0.84 5.20 37.16 0.19 1.04 16 4 C 0.04 0.77 5.17 -3.83 -0.02 0.75 16 5 N -0.53 -11.13 4.40 -225.65 -0.99 -12.12 16 6 C 0.19 5.03 4.67 -4.97 -0.02 5.00 16 7 C -0.50 -14.02 8.50 -34.44 -0.29 -14.31 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 11 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.10 2.05 2.39 -65.68 -0.16 1.90 16 16 H 0.09 2.23 7.25 -51.93 -0.38 1.85 16 17 C -0.16 -2.86 4.91 -25.04 -0.12 -2.98 16 18 C -0.10 -1.57 6.29 -25.61 -0.16 -1.73 16 19 C -0.11 -1.64 6.06 -25.61 -0.16 -1.80 16 20 C 0.09 1.53 2.94 -66.06 -0.19 1.34 16 21 H 0.06 0.95 3.24 -51.93 -0.17 0.78 16 22 N -0.84 -14.20 9.27 -3.26 -0.03 -14.23 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.03 0.35 7.98 -51.93 -0.41 -0.06 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.87 7.01 -51.93 -0.36 0.50 16 28 H 0.05 0.84 5.67 -51.93 -0.29 0.54 16 29 H 0.08 1.33 7.80 -51.93 -0.41 0.92 16 30 H 0.02 0.60 7.74 -51.93 -0.40 0.20 16 31 H 0.00 -0.13 8.02 -51.93 -0.42 -0.54 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.10 1.77 3.07 -51.98 -0.16 1.61 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 38 H 0.05 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.32 4.50 9.02 -39.29 -0.35 4.14 16 40 H 0.35 6.22 9.08 -39.29 -0.36 5.86 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -29.77 300.77 -7.51 -37.29 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.63 Total: 7.00 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 0.03 Total: -8.06 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.29 Total: -52.85 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.14 Total: -5.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.77 -7.51 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.451 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds