Wall clock time and date at job start Mon Mar 30 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 113.99881 * 2 1 4 4 C 1.52999 * 109.47113 * 175.28547 * 3 2 1 5 5 N 1.46895 * 109.47492 * 82.14293 * 4 3 2 6 6 C 1.46905 * 111.00237 * 168.46604 * 5 4 3 7 7 C 1.50699 * 109.47159 * 198.00764 * 6 5 4 8 8 H 1.08002 * 119.99810 * 4.51543 * 7 6 5 9 9 C 1.37873 * 120.00033 * 184.51751 * 7 6 5 10 10 N 1.31515 * 119.99969 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00165 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47381 * 59.99856 * 11 9 7 13 13 H 1.48497 * 109.47103 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46896 * 299.99909 * 11 9 7 15 15 C 1.46902 * 111.00253 * 292.42320 * 5 4 3 16 16 H 1.09004 * 110.67117 * 208.57826 * 15 5 4 17 17 C 1.54958 * 110.92000 * 331.88448 * 15 5 4 18 18 C 1.54264 * 104.16028 * 156.29764 * 17 15 5 19 19 C 1.53876 * 106.63928 * 336.44235 * 18 17 15 20 20 C 1.54262 * 106.59893 * 359.97438 * 19 18 17 21 21 H 1.09001 * 110.48384 * 264.93080 * 20 19 18 22 22 N 1.46893 * 110.49096 * 142.28688 * 20 19 18 23 23 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47378 * 300.00152 * 1 2 3 25 25 H 1.09005 * 109.47249 * 60.00342 * 1 2 3 26 26 H 1.08992 * 109.47558 * 55.28137 * 3 2 1 27 27 H 1.08999 * 109.47237 * 295.27991 * 3 2 1 28 28 H 1.09004 * 109.46877 * 322.14414 * 4 3 2 29 29 H 1.09001 * 109.47389 * 202.14735 * 4 3 2 30 30 H 1.08993 * 109.46780 * 318.00653 * 6 5 4 31 31 H 1.08998 * 109.47082 * 78.00877 * 6 5 4 32 32 H 0.96998 * 120.00349 * 179.97438 * 10 9 7 33 33 H 1.08995 * 110.48178 * 37.64016 * 17 15 5 34 34 H 1.09000 * 110.53210 * 274.97389 * 17 15 5 35 35 H 1.09008 * 110.03473 * 217.13844 * 18 17 15 36 36 H 1.08999 * 110.03563 * 95.75354 * 18 17 15 37 37 H 1.09000 * 110.03248 * 119.26175 * 19 18 17 38 38 H 1.08999 * 110.03614 * 240.69027 * 19 18 17 39 39 H 1.00904 * 111.00498 * 56.42758 * 22 20 19 40 40 H 1.00901 * 111.00542 * 180.38614 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 0.1186 5 7 4.1056 0.9142 -1.2056 6 6 5.5669 1.0634 -1.1862 7 6 6.0749 1.2175 -2.5966 8 1 5.3767 1.2791 -3.4183 9 6 7.4309 1.2799 -2.8380 10 7 8.2810 1.2055 -1.8373 11 14 8.0605 1.4717 -4.5862 12 1 7.5345 2.7334 -5.1663 13 1 9.5449 1.5121 -4.5760 14 1 7.6028 0.3213 -5.4061 15 6 3.7190 -0.4203 -1.6828 16 1 4.4799 -0.8258 -2.3496 17 6 3.4636 -1.3806 -0.4938 18 6 2.5235 -2.4575 -1.0736 19 6 1.8098 -1.8175 -2.2773 20 6 2.3403 -0.3732 -2.3872 21 1 1.6726 0.3185 -1.8734 22 7 2.4959 0.0116 -3.7963 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6233 1.8755 0.8446 27 1 1.7570 1.8159 -0.9292 28 1 3.7798 0.3711 0.7975 29 1 3.9392 2.1199 0.5067 30 1 5.8342 1.9460 -0.6053 31 1 6.0163 0.1800 -0.7327 32 1 9.2350 1.2490 -2.0071 33 1 2.9780 -0.8517 0.3262 34 1 4.3980 -1.8306 -0.1583 35 1 1.7926 -2.7586 -0.3230 36 1 3.1020 -3.3222 -1.3990 37 1 2.0426 -2.3711 -3.1869 38 1 0.7326 -1.8080 -2.1109 39 1 1.6267 -0.0933 -4.2980 40 1 2.8486 0.9534 -3.8772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070845082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:47 Heat of formation + Delta-G solvation = -42.975788 kcal Electronic energy + Delta-G solvation = -19425.370986 eV Core-core repulsion = 16660.974680 eV Total energy + Delta-G solvation = -2764.396307 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92110 -37.97233 -36.54771 -34.60062 -33.32048 -31.10347 -29.00305 -27.90281 -27.08654 -26.35494 -23.78229 -23.06438 -20.80607 -20.22226 -18.43606 -17.80591 -17.32117 -16.63202 -16.51874 -16.15312 -15.86108 -15.51323 -15.30257 -14.44681 -14.18880 -14.12465 -13.73157 -13.28666 -13.17053 -12.95149 -12.71000 -12.54099 -12.36650 -12.25681 -12.03777 -11.90968 -11.58481 -11.55451 -11.35888 -11.17556 -10.78798 -10.55456 -10.41143 -9.22671 -8.82742 -8.14713 -6.23297 1.41056 1.44978 1.52413 2.43369 2.93969 3.16961 3.34618 3.79843 3.92853 4.10900 4.23762 4.35896 4.39682 4.47446 4.62006 4.68441 4.73063 4.74919 4.84624 4.88288 4.90521 4.97766 5.02389 5.07839 5.19879 5.26256 5.30419 5.32307 5.46630 5.56093 5.68077 5.76900 6.15260 6.39290 6.46017 6.60310 6.74696 6.89316 6.94419 7.45736 8.95317 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029828 B = 0.007580 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.474984 B = 3693.094657 C = 3995.840421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.382 6.382 3 C 0.072 3.928 4 C 0.038 3.962 5 N -0.529 5.529 6 C 0.210 3.790 7 C -0.508 4.508 8 H 0.064 0.936 9 C -0.002 4.002 10 N -0.939 5.939 11 Si 0.966 3.034 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.100 3.900 16 H 0.040 0.960 17 C -0.158 4.158 18 C -0.097 4.097 19 C -0.102 4.102 20 C 0.100 3.900 21 H 0.075 0.925 22 N -0.856 5.856 23 H 0.094 0.906 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.001 0.999 31 H -0.043 1.043 32 H 0.262 0.738 33 H 0.117 0.883 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.340 0.660 40 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 -2.755 2.870 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.302 6.302 3 C -0.004 4.004 4 C -0.090 4.090 5 N -0.252 5.252 6 C 0.084 3.916 7 C -0.547 4.547 8 H 0.082 0.918 9 C -0.199 4.199 10 N -0.580 5.580 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.010 4.010 16 H 0.058 0.942 17 C -0.197 4.197 18 C -0.135 4.135 19 C -0.141 4.141 20 C -0.011 4.011 21 H 0.092 0.908 22 N -0.387 5.387 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.019 0.981 31 H -0.025 1.025 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.176 -3.152 2.545 17.647 hybrid contribution 0.668 0.461 0.075 0.815 sum -16.508 -2.691 2.620 16.930 Atomic orbital electron populations 1.22893 0.81074 1.03377 1.00333 1.88190 1.20077 1.27017 1.94879 1.22439 0.91798 0.85310 1.00869 1.22432 0.94576 1.00678 0.91297 1.62249 1.11032 1.27969 1.23913 1.19352 0.83282 0.92923 0.96069 1.21444 0.91521 1.48017 0.93670 0.91790 1.25874 0.97235 0.95384 1.01368 1.70086 1.02481 1.52494 1.32979 0.85483 0.76693 0.78999 0.79697 1.19066 1.21037 1.19927 1.22482 0.96338 0.87079 0.95055 0.94208 1.23262 0.97826 0.97984 1.00581 1.21764 0.97809 0.96463 0.97476 1.21997 0.99733 0.94800 0.97544 1.22457 0.94734 0.96564 0.87324 0.90794 1.58656 1.34453 1.32200 1.13387 0.88784 0.93275 0.94047 0.91009 0.92820 0.93992 0.90676 0.98138 1.02491 0.92956 0.86570 0.96142 0.90514 0.93740 0.92730 0.90458 0.84681 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.49 113.37 1.19 1.50 16 2 O -0.38 -9.21 3.96 -148.98 -0.59 -9.80 16 3 C 0.07 1.89 5.20 71.98 0.37 2.26 16 4 C 0.04 1.34 5.17 86.30 0.45 1.79 16 5 N -0.53 -22.87 4.40 -867.83 -3.82 -26.69 16 6 C 0.21 11.52 4.67 85.56 0.40 11.92 16 7 C -0.51 -29.72 8.50 25.60 0.22 -29.50 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 10 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 11 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.10 4.06 2.39 46.23 0.11 4.17 16 16 H 0.04 2.03 7.25 -2.39 -0.02 2.01 16 17 C -0.16 -5.63 4.91 31.69 0.16 -5.48 16 18 C -0.10 -2.79 6.29 31.32 0.20 -2.59 16 19 C -0.10 -2.80 6.06 31.32 0.19 -2.61 16 20 C 0.10 3.20 2.94 45.99 0.14 3.34 16 21 H 0.07 2.19 3.24 -2.39 -0.01 2.18 16 22 N -0.86 -27.86 9.27 -164.24 -1.52 -29.39 16 23 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.04 0.65 7.98 -2.38 -0.02 0.63 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.47 7.01 -2.39 -0.02 1.45 16 28 H 0.04 1.52 5.67 -2.38 -0.01 1.50 16 29 H 0.07 2.63 7.80 -2.39 -0.02 2.61 16 30 H 0.00 0.03 7.74 -2.39 -0.02 0.01 16 31 H -0.04 -2.61 8.02 -2.39 -0.02 -2.63 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.12 3.87 3.07 -3.19 -0.01 3.86 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.58 8.04 -2.39 -0.02 1.56 16 38 H 0.08 1.68 8.03 -2.39 -0.02 1.66 16 39 H 0.34 8.78 9.02 -89.69 -0.81 7.97 16 40 H 0.34 11.99 9.08 -89.69 -0.81 11.18 16 Total: -1.00 -66.83 300.77 -0.33 -67.16 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.59 Total: 23.30 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 3.88 Total: -14.82 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -5.06 Total: -114.23 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.59 Total: -9.80 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -66.83 -0.33 -67.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.188 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds