Wall clock time and date at job start Mon Mar 30 2020 04:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99882 * 2 1 4 4 C 1.53000 * 109.47120 * 180.63642 * 3 2 1 5 5 N 1.46894 * 109.47352 * 67.83161 * 4 3 2 6 6 C 1.46902 * 111.00607 * 284.97873 * 5 4 3 7 7 C 1.50694 * 109.47373 * 172.30351 * 6 5 4 8 8 H 1.08003 * 120.00183 * 354.47088 * 7 6 5 9 9 C 1.37883 * 120.00049 * 174.47547 * 7 6 5 10 10 N 1.31514 * 119.99605 * 353.68584 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 173.68569 * 9 7 6 12 12 H 1.48503 * 109.47144 * 5.00694 * 11 9 7 13 13 H 1.48490 * 109.46892 * 125.00853 * 11 9 7 14 14 H 1.48505 * 109.46840 * 245.01204 * 11 9 7 15 15 C 1.46903 * 110.99922 * 161.02390 * 5 4 3 16 16 C 1.53001 * 109.47515 * 293.95689 * 15 5 4 17 17 N 1.46898 * 109.47187 * 180.02562 * 16 15 5 18 18 C 1.46899 * 110.99765 * 180.02562 * 17 16 15 19 19 C 1.52996 * 117.50042 * 223.61873 * 18 17 16 20 20 C 1.52993 * 60.00332 * 252.51010 * 19 18 17 21 21 H 1.09002 * 109.47319 * 183.63621 * 1 2 3 22 22 H 1.08998 * 109.47535 * 303.64000 * 1 2 3 23 23 H 1.09004 * 109.46808 * 63.63831 * 1 2 3 24 24 H 1.08998 * 109.47310 * 60.63231 * 3 2 1 25 25 H 1.09001 * 109.47022 * 300.62906 * 3 2 1 26 26 H 1.09008 * 109.46926 * 307.83597 * 4 3 2 27 27 H 1.08997 * 109.47225 * 187.83616 * 4 3 2 28 28 H 1.09002 * 109.47143 * 292.30969 * 6 5 4 29 29 H 1.09006 * 109.46606 * 52.29981 * 6 5 4 30 30 H 0.97002 * 119.99496 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47046 * 173.95267 * 15 5 4 32 32 H 1.08998 * 109.46949 * 53.95958 * 15 5 4 33 33 H 1.08999 * 109.46819 * 59.99609 * 16 15 5 34 34 H 1.08996 * 109.46719 * 300.00181 * 16 15 5 35 35 H 1.00890 * 111.00358 * 56.04737 * 17 16 15 36 36 H 1.09003 * 115.54998 * 9.32687 * 18 17 16 37 37 H 1.09008 * 117.49626 * 0.02562 * 19 18 17 38 38 H 1.09001 * 117.49933 * 145.01861 * 19 18 17 39 39 H 1.09000 * 117.50313 * 252.51078 * 20 19 18 40 40 H 1.09001 * 117.51679 * 107.47409 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0160 5 7 3.9692 0.6310 -1.3055 6 6 3.6952 -0.8104 -1.3786 7 6 3.9761 -1.3051 -2.7740 8 1 4.2370 -0.6042 -3.5532 9 6 3.8999 -2.6526 -3.0562 10 7 3.7050 -3.5177 -2.0850 11 14 4.0735 -3.2493 -4.8178 12 1 4.4041 -2.1007 -5.6992 13 1 5.1589 -4.2598 -4.8934 14 1 2.7953 -3.8615 -5.2613 15 6 5.3914 0.9093 -1.5462 16 6 5.5955 2.4167 -1.7103 17 7 7.0176 2.6949 -1.9516 18 6 7.2519 4.1360 -2.1137 19 6 8.1826 4.5775 -3.2450 20 6 8.6509 4.6650 -1.7911 21 1 -0.3634 -1.0256 0.0652 22 1 -0.3634 0.5693 0.8555 23 1 -0.3633 0.4563 -0.9208 24 1 1.6976 1.8424 0.8956 25 1 1.6797 1.8503 -0.8843 26 1 3.8560 0.5239 0.7895 27 1 3.9793 2.1703 0.1240 28 1 4.3342 -1.3381 -0.6705 29 1 2.6496 -0.9944 -1.1313 30 1 3.6510 -4.4657 -2.2836 31 1 5.7132 0.3982 -2.4536 32 1 5.9796 0.5529 -0.7006 33 1 5.2738 2.9277 -0.8029 34 1 5.0074 2.7730 -2.5559 35 1 7.3560 2.1811 -2.7511 36 1 6.4040 4.7795 -1.8790 37 1 8.6207 3.7986 -3.8692 38 1 7.9470 5.5116 -3.7549 39 1 8.7234 5.6566 -1.3444 40 1 9.3972 3.9437 -1.4581 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070845242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:10 Heat of formation + Delta-G solvation = -10.983087 kcal Electronic energy + Delta-G solvation = -17842.773470 eV Core-core repulsion = 15079.764471 eV Total energy + Delta-G solvation = -2763.008999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.17507 -37.60748 -36.11847 -33.26072 -32.34573 -29.52624 -27.72696 -26.06345 -25.00893 -22.40470 -22.18775 -21.83694 -21.14779 -19.55949 -16.53895 -15.98177 -15.79601 -15.74731 -15.33942 -14.86087 -14.45514 -14.22141 -13.78627 -13.41139 -12.79559 -12.44121 -12.37335 -12.02898 -11.80549 -11.56066 -11.43037 -11.19507 -10.93138 -10.76231 -10.73642 -10.56548 -10.46464 -10.18266 -10.04748 -9.68951 -9.21227 -8.77735 -8.29692 -8.09459 -7.13635 -5.90922 -3.89796 3.35840 3.43124 3.47302 3.80499 4.12822 4.35131 4.51338 4.88912 4.95195 5.04775 5.20052 5.43800 5.51969 5.54324 5.59490 5.65054 5.72012 5.76939 5.82133 5.83508 5.89280 5.99400 6.07248 6.09733 6.12107 6.23592 6.40969 6.64523 6.76486 7.23471 7.45715 7.59222 7.64445 7.73764 7.91343 8.32204 8.39327 8.69744 9.18542 9.71710 11.19700 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.006820 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.071096 B = 4104.595567 C = 5702.340313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.070 3.930 4 C 0.050 3.950 5 N -0.534 5.534 6 C 0.183 3.817 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.284 1.284 15 C 0.064 3.936 16 C 0.063 3.937 17 N -0.660 5.660 18 C 0.028 3.972 19 C -0.210 4.210 20 C -0.175 4.175 21 H 0.080 0.920 22 H 0.029 0.971 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.073 0.927 28 H -0.009 1.009 29 H 0.065 0.935 30 H 0.258 0.742 31 H 0.084 0.916 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.344 0.656 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 14.029 2.247 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.007 4.007 4 C -0.078 4.078 5 N -0.259 5.259 6 C 0.059 3.941 7 C -0.544 4.544 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.065 4.065 16 C -0.066 4.066 17 N -0.291 5.291 18 C -0.083 4.083 19 C -0.249 4.249 20 C -0.214 4.214 21 H 0.099 0.901 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.009 0.991 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.164 0.836 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.631 13.860 2.584 14.193 hybrid contribution 0.009 -0.449 -1.184 1.266 sum 1.640 13.410 1.400 13.583 Atomic orbital electron populations 1.22653 0.82701 1.02198 0.98910 1.88170 1.18338 1.27179 1.94906 1.22523 0.94217 0.85123 0.98826 1.22133 0.93339 0.99394 0.92973 1.62152 1.15892 1.19859 1.28016 1.20086 0.98586 0.79199 0.96274 1.21230 1.46091 0.91722 0.95340 0.92283 1.24951 0.95869 0.96829 0.96876 1.70000 1.50633 1.01816 1.31042 0.86559 0.77533 0.78593 0.85376 1.19869 1.21338 1.21055 1.21873 0.89844 0.92879 1.01866 1.22097 0.86292 0.98001 1.00229 1.60167 1.18895 1.04643 1.45386 1.22398 0.93858 0.90292 1.01774 1.23410 1.05967 1.03450 0.92041 1.23101 0.98721 1.02022 0.97516 0.90099 0.95205 0.94498 0.94413 0.92982 0.94750 0.90876 0.99089 0.91720 0.93212 0.89723 0.95449 0.91616 0.94415 0.83638 0.87590 0.88726 0.89055 0.89065 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.34 7.79 -35.23 -0.27 -7.62 16 3 C 0.07 1.20 6.23 37.16 0.23 1.43 16 4 C 0.05 0.93 5.39 -3.83 -0.02 0.91 16 5 N -0.53 -11.64 4.45 -236.07 -1.05 -12.69 16 6 C 0.18 4.91 4.51 -4.98 -0.02 4.89 16 7 C -0.50 -14.45 8.22 -34.44 -0.28 -14.73 16 8 H 0.06 1.67 7.25 -52.48 -0.38 1.29 16 9 C 0.06 1.61 5.45 -17.82 -0.10 1.52 16 10 N -0.90 -27.28 13.28 55.43 0.74 -26.54 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.06 1.27 5.07 -3.82 -0.02 1.25 16 16 C 0.06 0.99 5.51 -3.82 -0.02 0.97 16 17 N -0.66 -9.43 6.78 -106.73 -0.72 -10.15 16 18 C 0.03 0.34 6.31 -67.71 -0.43 -0.09 16 19 C -0.21 -2.17 10.23 -26.74 -0.27 -2.45 16 20 C -0.18 -1.85 10.46 -26.73 -0.28 -2.13 16 21 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 22 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.68 8.01 -51.92 -0.42 0.26 16 27 H 0.07 1.14 5.89 -51.93 -0.31 0.83 16 28 H -0.01 -0.26 8.11 -51.93 -0.42 -0.68 16 29 H 0.07 1.85 5.14 -51.93 -0.27 1.58 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.08 1.85 6.59 -51.93 -0.34 1.50 16 32 H 0.03 0.57 8.12 -51.93 -0.42 0.14 16 33 H 0.07 0.99 6.25 -51.93 -0.32 0.67 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.34 4.82 8.52 -39.30 -0.33 4.49 16 36 H 0.11 1.21 7.90 -51.93 -0.41 0.80 16 37 H 0.09 0.98 8.09 -51.92 -0.42 0.56 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -31.23 322.99 -8.55 -39.78 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.98 Total: 2.17 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -0.10 Total: -6.82 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -1.04 Total: -49.38 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.27 Total: -7.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.23 -8.55 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.800 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds