Wall clock time and date at job start Mon Mar 30 2020 04:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99882 * 2 1 4 4 C 1.53000 * 109.47120 * 180.63642 * 3 2 1 5 5 N 1.46894 * 109.47352 * 67.83161 * 4 3 2 6 6 C 1.46902 * 111.00607 * 284.97873 * 5 4 3 7 7 C 1.50694 * 109.47373 * 172.30351 * 6 5 4 8 8 H 1.08003 * 120.00183 * 354.47088 * 7 6 5 9 9 C 1.37883 * 120.00049 * 174.47547 * 7 6 5 10 10 N 1.31514 * 119.99605 * 353.68584 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 173.68569 * 9 7 6 12 12 H 1.48503 * 109.47144 * 5.00694 * 11 9 7 13 13 H 1.48490 * 109.46892 * 125.00853 * 11 9 7 14 14 H 1.48505 * 109.46840 * 245.01204 * 11 9 7 15 15 C 1.46903 * 110.99922 * 161.02390 * 5 4 3 16 16 C 1.53001 * 109.47515 * 293.95689 * 15 5 4 17 17 N 1.46898 * 109.47187 * 180.02562 * 16 15 5 18 18 C 1.46899 * 110.99765 * 180.02562 * 17 16 15 19 19 C 1.52996 * 117.50042 * 223.61873 * 18 17 16 20 20 C 1.52993 * 60.00332 * 252.51010 * 19 18 17 21 21 H 1.09002 * 109.47319 * 183.63621 * 1 2 3 22 22 H 1.08998 * 109.47535 * 303.64000 * 1 2 3 23 23 H 1.09004 * 109.46808 * 63.63831 * 1 2 3 24 24 H 1.08998 * 109.47310 * 60.63231 * 3 2 1 25 25 H 1.09001 * 109.47022 * 300.62906 * 3 2 1 26 26 H 1.09008 * 109.46926 * 307.83597 * 4 3 2 27 27 H 1.08997 * 109.47225 * 187.83616 * 4 3 2 28 28 H 1.09002 * 109.47143 * 292.30969 * 6 5 4 29 29 H 1.09006 * 109.46606 * 52.29981 * 6 5 4 30 30 H 0.97002 * 119.99496 * 179.97438 * 10 9 7 31 31 H 1.09001 * 109.47046 * 173.95267 * 15 5 4 32 32 H 1.08998 * 109.46949 * 53.95958 * 15 5 4 33 33 H 1.08999 * 109.46819 * 59.99609 * 16 15 5 34 34 H 1.08996 * 109.46719 * 300.00181 * 16 15 5 35 35 H 1.00890 * 111.00358 * 56.04737 * 17 16 15 36 36 H 1.09003 * 115.54998 * 9.32687 * 18 17 16 37 37 H 1.09008 * 117.49626 * 0.02562 * 19 18 17 38 38 H 1.09001 * 117.49933 * 145.01861 * 19 18 17 39 39 H 1.09000 * 117.50313 * 252.51078 * 20 19 18 40 40 H 1.09001 * 117.51679 * 107.47409 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0160 5 7 3.9692 0.6310 -1.3055 6 6 3.6952 -0.8104 -1.3786 7 6 3.9761 -1.3051 -2.7740 8 1 4.2370 -0.6042 -3.5532 9 6 3.8999 -2.6526 -3.0562 10 7 3.7050 -3.5177 -2.0850 11 14 4.0735 -3.2493 -4.8178 12 1 4.4041 -2.1007 -5.6992 13 1 5.1589 -4.2598 -4.8934 14 1 2.7953 -3.8615 -5.2613 15 6 5.3914 0.9093 -1.5462 16 6 5.5955 2.4167 -1.7103 17 7 7.0176 2.6949 -1.9516 18 6 7.2519 4.1360 -2.1137 19 6 8.1826 4.5775 -3.2450 20 6 8.6509 4.6650 -1.7911 21 1 -0.3634 -1.0256 0.0652 22 1 -0.3634 0.5693 0.8555 23 1 -0.3633 0.4563 -0.9208 24 1 1.6976 1.8424 0.8956 25 1 1.6797 1.8503 -0.8843 26 1 3.8560 0.5239 0.7895 27 1 3.9793 2.1703 0.1240 28 1 4.3342 -1.3381 -0.6705 29 1 2.6496 -0.9944 -1.1313 30 1 3.6510 -4.4657 -2.2836 31 1 5.7132 0.3982 -2.4536 32 1 5.9796 0.5529 -0.7006 33 1 5.2738 2.9277 -0.8029 34 1 5.0074 2.7730 -2.5559 35 1 7.3560 2.1811 -2.7511 36 1 6.4040 4.7795 -1.8790 37 1 8.6207 3.7986 -3.8692 38 1 7.9470 5.5116 -3.7549 39 1 8.7234 5.6566 -1.3444 40 1 9.3972 3.9437 -1.4581 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070845242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:09 Heat of formation + Delta-G solvation = -33.993871 kcal Electronic energy + Delta-G solvation = -17843.771293 eV Core-core repulsion = 15079.764471 eV Total energy + Delta-G solvation = -2764.006822 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58149 -38.73585 -37.61717 -34.90913 -34.10141 -31.07653 -29.49834 -27.45812 -26.69715 -23.93539 -23.42729 -23.18245 -22.12506 -21.19603 -18.54031 -17.42472 -17.12480 -17.01154 -16.69862 -16.53327 -15.99277 -15.56481 -15.29962 -14.74003 -14.50921 -14.01915 -13.63686 -13.51907 -13.37433 -13.03773 -12.73758 -12.63166 -12.50564 -12.34247 -12.30784 -12.06617 -11.93381 -11.61071 -11.55776 -11.14940 -11.03724 -10.61048 -10.28925 -9.16995 -8.97982 -8.13837 -6.21411 1.40074 1.41074 1.53977 2.42636 2.83204 3.02591 3.07068 3.19903 3.60152 4.00421 4.06101 4.15691 4.20599 4.27883 4.40550 4.41329 4.51894 4.57712 4.61495 4.66154 4.77131 4.82012 4.83554 4.89077 4.94662 5.05552 5.11888 5.17711 5.31197 5.39454 5.62380 5.72590 6.10767 6.19338 6.31759 6.40323 6.50963 6.73824 6.96492 7.45652 8.97451 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.006820 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.071096 B = 4104.595567 C = 5702.340313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.070 3.930 4 C 0.048 3.952 5 N -0.536 5.536 6 C 0.200 3.800 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.964 3.036 12 H -0.264 1.264 13 H -0.281 1.281 14 H -0.278 1.278 15 C 0.070 3.930 16 C 0.083 3.917 17 N -0.669 5.669 18 C 0.008 3.992 19 C -0.200 4.200 20 C -0.169 4.169 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.015 0.985 27 H 0.108 0.892 28 H -0.053 1.053 29 H 0.048 0.952 30 H 0.261 0.739 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.343 0.657 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 16.150 1.475 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.006 4.006 4 C -0.080 4.080 5 N -0.260 5.260 6 C 0.074 3.926 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.789 3.211 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.203 1.203 15 C -0.059 4.059 16 C -0.046 4.046 17 N -0.300 5.300 18 C -0.102 4.102 19 C -0.239 4.239 20 C -0.207 4.207 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.126 0.874 28 H -0.036 1.036 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.624 16.019 1.815 16.203 hybrid contribution 0.030 -1.065 -0.879 1.381 sum 1.654 14.954 0.936 15.074 Atomic orbital electron populations 1.22801 0.80614 1.02734 1.00591 1.88087 1.20825 1.29101 1.95252 1.22631 0.92807 0.84443 1.00766 1.22325 0.94995 1.00284 0.90420 1.62088 1.17080 1.16520 1.30337 1.19708 0.96531 0.81933 0.94423 1.21522 1.46012 0.92167 0.96057 0.92368 1.25870 0.95355 0.96976 1.01483 1.70141 1.51587 1.02224 1.33509 0.85416 0.77725 0.78194 0.79730 1.18789 1.20716 1.20326 1.21809 0.88470 0.95792 0.99839 1.21802 0.87543 0.94460 1.00799 1.60160 1.17559 1.06528 1.45725 1.22511 0.95034 0.88790 1.03869 1.23462 1.04566 1.03943 0.91911 1.23159 0.97216 1.02589 0.97761 0.90491 0.92052 0.93937 0.90616 0.92657 0.96634 0.87395 1.03563 0.93424 0.92987 0.92358 0.96998 0.90235 0.94502 0.83834 0.86686 0.88985 0.87378 0.87194 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.41 -16.56 7.79 -148.98 -1.16 -17.72 16 3 C 0.07 2.29 6.23 71.98 0.45 2.74 16 4 C 0.05 1.74 5.39 86.30 0.47 2.20 16 5 N -0.54 -23.75 4.45 -900.79 -4.01 -27.76 16 6 C 0.20 11.20 4.51 85.55 0.39 11.59 16 7 C -0.52 -30.51 8.22 25.60 0.21 -30.30 16 8 H 0.06 3.35 7.25 -2.91 -0.02 3.33 16 9 C 0.00 0.04 5.45 84.66 0.46 0.50 16 10 N -0.93 -58.52 13.28 21.45 0.28 -58.23 16 11 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 12 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 C 0.07 2.81 5.07 86.30 0.44 3.25 16 16 C 0.08 2.54 5.51 86.30 0.48 3.01 16 17 N -0.67 -18.40 6.78 -491.58 -3.33 -21.73 16 18 C 0.01 0.18 6.31 44.92 0.28 0.47 16 19 C -0.20 -3.66 10.23 30.59 0.31 -3.35 16 20 C -0.17 -3.16 10.46 30.59 0.32 -2.84 16 21 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 23 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.02 0.62 8.01 -2.38 -0.02 0.60 16 27 H 0.11 3.12 5.89 -2.39 -0.01 3.10 16 28 H -0.05 -3.39 8.11 -2.39 -0.02 -3.41 16 29 H 0.05 2.85 5.14 -2.38 -0.01 2.84 16 30 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.06 2.63 6.59 -2.39 -0.02 2.62 16 32 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 33 H 0.08 2.21 6.25 -2.39 -0.01 2.19 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.34 9.46 8.52 -89.70 -0.76 8.69 16 36 H 0.12 2.31 7.90 -2.39 -0.02 2.29 16 37 H 0.09 1.74 8.09 -2.38 -0.02 1.72 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.38 322.99 -0.90 -70.28 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.24 Total: 18.08 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.05 Total: -10.62 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -7.06 Total: -107.72 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.16 Total: -17.72 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -69.38 -0.90 -70.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070845242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.290 kcal (2) G-P(sol) polarization free energy of solvation -69.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds