Wall clock time and date at job start Mon Mar 30 2020 04:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99837 * 2 1 4 4 C 1.52997 * 109.47078 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47114 * 65.00160 * 4 3 2 6 6 C 1.46905 * 111.00009 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47207 * 179.97438 * 6 5 4 8 8 C 1.53352 * 109.41800 * 295.12632 * 7 6 5 9 9 C 1.53190 * 109.15070 * 178.67720 * 8 7 6 10 10 N 1.46925 * 108.89356 * 54.57285 * 9 8 7 11 11 C 1.36935 * 120.62758 * 126.30089 * 10 9 8 12 12 H 1.08001 * 120.00088 * 332.62829 * 11 10 9 13 13 C 1.38817 * 119.99782 * 152.62208 * 11 10 9 14 14 N 1.31618 * 119.99923 * 159.36242 * 13 11 10 15 15 Si 1.86801 * 120.00195 * 339.36341 * 13 11 10 16 16 H 1.48501 * 109.47054 * 92.89675 * 15 13 11 17 17 H 1.48497 * 109.47324 * 212.90179 * 15 13 11 18 18 H 1.48501 * 109.46722 * 332.89954 * 15 13 11 19 19 C 1.46926 * 118.73822 * 306.31916 * 10 9 8 20 20 C 1.53037 * 109.46053 * 174.99477 * 7 6 5 21 21 H 1.08995 * 109.46817 * 60.00205 * 1 2 3 22 22 H 1.08999 * 109.46760 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47270 * 300.00207 * 1 2 3 24 24 H 1.09003 * 109.47450 * 59.99634 * 3 2 1 25 25 H 1.09002 * 109.46832 * 299.99787 * 3 2 1 26 26 H 1.08997 * 109.47276 * 304.99936 * 4 3 2 27 27 H 1.09005 * 109.47103 * 184.99388 * 4 3 2 28 28 H 1.00904 * 110.99880 * 303.95080 * 5 4 3 29 29 H 1.08996 * 109.47044 * 59.99343 * 6 5 4 30 30 H 1.08996 * 109.46566 * 299.99349 * 6 5 4 31 31 H 1.09008 * 109.45887 * 55.02276 * 7 6 5 32 32 H 1.09004 * 109.68561 * 58.70472 * 8 7 6 33 33 H 1.09004 * 109.47287 * 298.51133 * 8 7 6 34 34 H 1.09004 * 109.58215 * 294.71811 * 9 8 7 35 35 H 1.08997 * 109.58828 * 174.43980 * 9 8 7 36 36 H 0.96999 * 119.99917 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.58248 * 173.39705 * 19 10 9 38 38 H 1.08994 * 109.58922 * 293.68210 * 19 10 9 39 39 H 1.09003 * 109.49698 * 61.43697 * 20 7 6 40 40 H 1.08994 * 109.52761 * 301.35110 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5624 -1.2543 6 6 5.4405 0.4294 -1.2889 7 6 5.8623 -0.2218 -2.6076 8 6 5.3198 -1.6550 -2.6649 9 6 5.7174 -2.2898 -4.0012 10 7 7.1742 -2.1874 -4.1618 11 6 7.9271 -3.3006 -4.4246 12 1 7.5883 -4.2718 -4.0951 13 6 9.1256 -3.1809 -5.1146 14 7 10.0344 -4.1287 -5.0244 15 14 9.4487 -1.6747 -6.1712 16 1 10.1662 -0.6517 -5.3687 17 1 10.2797 -2.0591 -7.3403 18 1 8.1568 -1.1159 -6.6446 19 6 7.8079 -0.8679 -4.0347 20 6 7.3898 -0.2468 -2.6982 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.6886 1.8465 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8508 0.5686 0.8427 27 1 3.9784 2.1767 0.0901 28 1 3.5305 -0.3315 -1.3920 29 1 5.7686 -0.1921 -0.4558 30 1 5.8969 1.4159 -1.2082 31 1 5.4584 0.3522 -3.4416 32 1 4.2333 -1.6401 -2.5781 33 1 5.7427 -2.2367 -1.8458 34 1 5.2219 -1.7638 -4.8173 35 1 5.4216 -3.3388 -4.0098 36 1 10.8721 -4.0448 -5.5062 37 1 8.8919 -0.9790 -4.0628 38 1 7.4849 -0.2269 -4.8549 39 1 7.7932 -0.8416 -1.8786 40 1 7.7753 0.7706 -2.6335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082645827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:24 Heat of formation + Delta-G solvation = -54.615802 kcal Electronic energy + Delta-G solvation = -17979.767634 eV Core-core repulsion = 15214.866579 eV Total energy + Delta-G solvation = -2764.901056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86722 -38.93089 -36.96581 -34.79094 -33.07182 -31.89297 -30.33060 -27.73464 -26.81791 -25.15766 -24.08330 -22.68076 -22.54234 -20.71578 -18.76811 -17.58422 -17.28270 -16.98830 -16.64143 -15.98165 -15.74494 -15.45332 -15.32062 -15.10771 -14.53491 -14.38045 -14.22389 -13.71709 -13.52592 -13.09563 -12.98842 -12.58978 -12.48736 -12.37412 -12.23223 -12.13684 -12.01214 -11.61149 -11.52418 -11.16850 -11.07446 -10.65348 -10.57399 -9.34982 -8.91646 -8.16896 -5.47867 1.29739 1.41001 1.51062 2.41955 2.92794 3.05960 3.20789 3.39774 3.92646 4.00534 4.04506 4.16927 4.36516 4.40217 4.43927 4.55198 4.56144 4.57708 4.61082 4.68340 4.73881 4.78842 4.82268 4.91005 4.92063 4.97736 5.02831 5.20783 5.22841 5.26553 5.30455 5.60371 5.87373 6.09616 6.12548 6.28163 6.46413 6.93179 7.63768 8.04954 9.03372 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046852 B = 0.004601 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.486287 B = 6083.915871 C = 6366.143380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.062 3.938 4 C 0.059 3.941 5 N -0.693 5.693 6 C 0.074 3.926 7 C -0.070 4.070 8 C -0.117 4.117 9 C 0.143 3.857 10 N -0.622 5.622 11 C -0.250 4.250 12 H 0.049 0.951 13 C -0.037 4.037 14 N -0.959 5.959 15 Si 0.950 3.050 16 H -0.272 1.272 17 H -0.310 1.310 18 H -0.263 1.263 19 C 0.120 3.880 20 C -0.120 4.120 21 H 0.047 0.953 22 H 0.090 0.910 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.098 0.902 28 H 0.345 0.655 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.262 0.738 37 H 0.047 0.953 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.134 14.671 10.682 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.339 6.339 3 C -0.015 4.015 4 C -0.071 4.071 5 N -0.325 5.325 6 C -0.055 4.055 7 C -0.089 4.089 8 C -0.156 4.156 9 C 0.018 3.982 10 N -0.347 5.347 11 C -0.380 4.380 12 H 0.066 0.934 13 C -0.231 4.231 14 N -0.606 5.606 15 Si 0.779 3.221 16 H -0.199 1.199 17 H -0.239 1.239 18 H -0.187 1.187 19 C -0.005 4.005 20 C -0.159 4.159 21 H 0.066 0.934 22 H 0.108 0.892 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.117 0.883 28 H 0.164 0.836 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.922 15.043 10.296 24.873 hybrid contribution 0.631 -0.551 -0.069 0.841 sum -16.291 14.492 10.227 24.083 Atomic orbital electron populations 1.22861 0.79645 1.03489 1.00758 1.87830 1.21401 1.29088 1.95600 1.22671 0.92890 0.84560 1.01331 1.22060 0.93865 1.00646 0.90489 1.60587 1.06353 1.30286 1.35297 1.21898 0.87990 1.00101 0.95531 1.21015 0.94207 0.95565 0.98151 1.21968 1.00280 0.95941 0.97448 1.21081 0.82454 0.98929 0.95716 1.44504 1.03195 1.03642 1.83326 1.18895 1.02162 0.87861 1.29089 0.93355 1.25922 0.96646 1.00236 1.00335 1.69973 1.07437 1.37589 1.45557 0.85850 0.77749 0.79959 0.78534 1.19906 1.23895 1.18727 1.21393 0.96400 0.86169 0.96536 1.21910 0.96291 1.00545 0.97177 0.93410 0.89169 0.92974 0.91182 0.92240 0.95170 0.88345 0.83601 0.95854 0.90075 0.90769 0.90151 0.93703 0.94904 0.93161 0.92941 0.93508 0.95000 0.93123 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -8.32 10.22 -148.98 -1.52 -9.84 16 3 C 0.06 1.00 6.28 71.98 0.45 1.45 16 4 C 0.06 1.05 6.11 86.30 0.53 1.58 16 5 N -0.69 -15.52 6.50 -513.89 -3.34 -18.86 16 6 C 0.07 1.78 5.14 86.30 0.44 2.22 16 7 C -0.07 -2.08 2.36 -10.66 -0.03 -2.10 16 8 C -0.12 -3.80 5.18 30.78 0.16 -3.64 16 9 C 0.14 5.75 6.50 86.36 0.56 6.31 16 10 N -0.62 -30.44 2.77 -699.10 -1.94 -32.38 16 11 C -0.25 -14.78 10.03 84.03 0.84 -13.94 16 12 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 13 C -0.04 -2.23 5.23 84.86 0.44 -1.78 16 14 N -0.96 -61.89 13.97 21.65 0.30 -61.59 16 15 Si 0.95 47.92 24.34 68.60 1.67 49.59 16 16 H -0.27 -12.89 6.62 99.48 0.66 -12.23 16 17 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 18 H -0.26 -12.75 6.64 99.48 0.66 -12.09 16 19 C 0.12 5.21 4.21 86.36 0.36 5.57 16 20 C -0.12 -4.07 5.36 30.67 0.16 -3.91 16 21 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 22 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.34 8.32 6.51 -89.69 -0.58 7.73 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.08 2.21 6.63 -2.38 -0.02 2.19 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 36 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 37 H 0.05 2.25 4.50 -2.39 -0.01 2.24 16 38 H 0.03 1.34 7.07 -2.39 -0.02 1.33 16 39 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -68.59 308.58 0.67 -67.92 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.31 Total: 11.76 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.18 Total: -6.60 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -4.98 Total: -112.82 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.52 Total: -9.84 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.67 Total: 49.59 kcal Total: -68.59 0.67 -67.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082645827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.308 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds