Wall clock time and date at job start Mon Mar 30 2020 04:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99825 * 2 1 4 4 C 1.52993 * 109.47229 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46948 * 65.00007 * 4 3 2 6 6 C 1.46899 * 110.99688 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46942 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.49702 * 305.05892 * 7 6 5 9 9 C 1.53040 * 109.49814 * 185.00123 * 7 6 5 10 10 C 1.53043 * 109.54030 * 178.64900 * 9 7 6 11 11 C 1.53196 * 109.31098 * 61.36048 * 10 9 7 12 12 N 1.46922 * 108.77514 * 305.36830 * 11 10 9 13 13 C 1.36942 * 120.62861 * 233.60547 * 12 11 10 14 14 H 1.08000 * 119.99766 * 27.68382 * 13 12 11 15 15 C 1.38811 * 120.00153 * 207.67459 * 13 12 11 16 16 N 1.31618 * 119.99628 * 17.37621 * 15 13 12 17 17 Si 1.86799 * 120.00060 * 197.36953 * 15 13 12 18 18 H 1.48497 * 109.47022 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46957 * 120.00326 * 17 15 13 20 20 H 1.48496 * 109.47335 * 240.00281 * 17 15 13 21 21 C 1.46925 * 118.74250 * 53.61188 * 12 11 10 22 22 H 1.08997 * 109.47110 * 299.99745 * 1 2 3 23 23 H 1.09000 * 109.47296 * 60.00204 * 1 2 3 24 24 H 1.09004 * 109.46797 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47128 * 60.00148 * 3 2 1 26 26 H 1.09001 * 109.47091 * 300.00108 * 3 2 1 27 27 H 1.09007 * 109.46924 * 305.00008 * 4 3 2 28 28 H 1.09000 * 109.47525 * 185.00308 * 4 3 2 29 29 H 1.00905 * 110.99899 * 303.95097 * 5 4 3 30 30 H 1.08998 * 109.47526 * 59.99891 * 6 5 4 31 31 H 1.09006 * 109.47426 * 299.99662 * 6 5 4 32 32 H 1.09001 * 109.46366 * 58.62805 * 9 7 6 33 33 H 1.09000 * 109.44869 * 298.66166 * 9 7 6 34 34 H 1.09002 * 109.49769 * 181.31326 * 10 9 7 35 35 H 1.09001 * 109.49646 * 301.41257 * 10 9 7 36 36 H 1.09003 * 109.58421 * 65.15601 * 11 10 9 37 37 H 1.08995 * 109.58329 * 185.58136 * 11 10 9 38 38 H 0.97007 * 119.99736 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.58974 * 186.60630 * 21 12 11 40 40 H 1.08995 * 109.58796 * 66.17632 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 5.4404 0.4294 -1.2889 7 6 5.8623 -0.2206 -2.6081 8 1 5.3361 -1.1673 -2.7319 9 6 7.3716 -0.4734 -2.5933 10 6 7.7894 -1.1543 -3.8987 11 6 7.4651 -0.2315 -5.0778 12 7 6.0433 0.1333 -5.0156 13 6 5.2248 -0.0628 -6.0959 14 1 5.4447 -0.8476 -6.8045 15 6 4.1126 0.7470 -6.2801 16 7 4.0212 1.8946 -5.6420 17 14 2.7457 0.2083 -7.4337 18 1 3.0871 -1.1110 -8.0236 19 1 1.4735 0.0969 -6.6757 20 1 2.5896 1.2104 -8.5183 21 6 5.5162 0.7127 -3.7726 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8507 0.5686 0.8428 28 1 3.9784 2.1766 0.0903 29 1 3.5304 -0.3315 -1.3920 30 1 5.7686 -0.1921 -0.4558 31 1 5.8969 1.4160 -1.2081 32 1 7.6237 -1.1176 -1.7509 33 1 7.8976 0.4761 -2.4945 34 1 8.8606 -1.3551 -3.8777 35 1 7.2451 -2.0921 -4.0103 36 1 8.0765 0.6688 -5.0160 37 1 7.6687 -0.7503 -6.0145 38 1 3.2441 2.4607 -5.7710 39 1 4.4338 0.8168 -3.8481 40 1 5.9686 1.6900 -3.6044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:33 Heat of formation + Delta-G solvation = -35.575091 kcal Electronic energy + Delta-G solvation = -18314.248670 eV Core-core repulsion = 15550.173282 eV Total energy + Delta-G solvation = -2764.075388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.19930 -37.60149 -35.30521 -33.00008 -31.28163 -29.78068 -28.43990 -26.16540 -25.11105 -24.03513 -22.03353 -21.52816 -20.48823 -18.86580 -16.59680 -16.48461 -15.95433 -15.49046 -14.85339 -14.42188 -14.15981 -13.87191 -13.62785 -13.43617 -12.84009 -12.41657 -12.25654 -12.08562 -11.87159 -11.60172 -11.32317 -11.24342 -10.87092 -10.82485 -10.56435 -10.32550 -10.09097 -9.90653 -9.74601 -9.62277 -9.34735 -9.20494 -8.31927 -7.90661 -6.50409 -5.63018 -3.05052 3.45692 3.53031 3.55372 3.85004 4.51120 4.61492 5.12430 5.30700 5.33873 5.42178 5.44156 5.47826 5.54561 5.64160 5.71747 5.74397 5.77701 5.89032 5.92451 5.97907 6.06653 6.34770 6.42334 6.43388 6.57869 6.65860 6.86025 6.92456 7.06224 7.14507 7.17815 7.44755 7.65970 7.85530 7.90148 8.05923 8.62956 9.37548 10.01862 10.58860 11.44282 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.008149 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.305949 B = 3435.357635 C = 4844.920094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.061 3.939 4 C 0.064 3.936 5 N -0.677 5.677 6 C 0.073 3.927 7 C -0.111 4.111 8 H 0.060 0.940 9 C -0.103 4.103 10 C -0.133 4.133 11 C 0.144 3.856 12 N -0.595 5.595 13 C -0.253 4.253 14 H 0.062 0.938 15 C 0.004 3.996 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.292 1.292 21 C 0.187 3.813 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.082 0.918 29 H 0.347 0.653 30 H 0.015 0.985 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.014 0.986 37 H 0.050 0.950 38 H 0.251 0.749 39 H 0.100 0.900 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -2.384 12.106 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.066 4.066 5 N -0.309 5.309 6 C -0.057 4.057 7 C -0.132 4.132 8 H 0.079 0.921 9 C -0.141 4.141 10 C -0.172 4.172 11 C 0.017 3.983 12 N -0.318 5.318 13 C -0.382 4.382 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.539 5.539 17 Si 0.728 3.272 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.219 1.219 21 C 0.062 3.938 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -1.410 -1.827 11.720 11.945 hybrid contribution -0.818 -0.658 0.129 1.058 sum -2.228 -2.485 11.849 12.310 Atomic orbital electron populations 1.22690 0.81248 1.02495 0.99805 1.87841 1.19594 1.28367 1.95403 1.22649 0.93831 0.84692 1.00404 1.21925 0.92878 1.00202 0.91554 1.60385 1.06811 1.30309 1.33347 1.21948 0.87434 0.99806 0.96504 1.21858 0.94658 1.00657 0.96030 0.92149 1.21402 0.96493 0.99519 0.96683 1.21996 0.98664 0.99745 0.96812 1.20896 0.87185 0.95006 0.95191 1.44142 1.03056 1.73605 1.10964 1.19180 1.05247 1.10704 1.03117 0.91978 1.24997 1.00534 0.94956 0.98975 1.70056 1.29006 1.09593 1.45229 0.86302 0.82710 0.77943 0.80276 1.20418 1.21612 1.21934 1.20736 1.01434 0.90503 0.81140 0.94546 0.93847 0.89907 0.93438 0.91879 0.95298 0.89928 0.83416 0.96655 0.91573 0.94085 0.92872 0.93447 0.92601 0.96788 0.93188 0.93863 0.88171 0.97083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.61 10.22 -35.23 -0.36 -5.97 16 3 C 0.06 0.80 6.28 37.15 0.23 1.04 16 4 C 0.06 0.90 6.10 -3.83 -0.02 0.87 16 5 N -0.68 -11.65 6.08 -113.78 -0.69 -12.34 16 6 C 0.07 1.24 5.08 -3.82 -0.02 1.22 16 7 C -0.11 -2.20 2.48 -90.50 -0.22 -2.43 16 8 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 9 C -0.10 -1.82 5.17 -26.69 -0.14 -1.96 16 10 C -0.13 -2.45 6.08 -26.61 -0.16 -2.61 16 11 C 0.14 3.19 6.52 -3.71 -0.02 3.16 16 12 N -0.60 -15.61 2.99 -172.32 -0.52 -16.13 16 13 C -0.25 -7.21 9.59 -15.06 -0.14 -7.36 16 14 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 16 N -0.89 -26.73 11.19 55.49 0.62 -26.11 16 17 Si 0.90 22.37 29.59 -169.99 -5.03 17.35 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 C 0.19 4.64 4.42 -3.71 -0.02 4.62 16 22 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.35 6.16 8.29 -39.29 -0.33 5.83 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.10 2.79 5.82 -51.93 -0.30 2.49 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -30.86 317.53 -8.04 -38.90 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.35 Total: 1.45 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.51 Total: -1.92 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.59 Total: -54.58 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.36 Total: -5.97 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.86 -8.04 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.323 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds