Wall clock time and date at job start Mon Mar 30 2020 04:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99881 * 2 1 4 4 C 1.52998 * 109.46758 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47358 * 64.99914 * 4 3 2 6 6 C 1.46901 * 111.00064 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47251 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.69888 * 298.25004 * 7 6 5 9 9 C 1.52756 * 109.51248 * 178.12849 * 7 6 5 10 10 C 1.53037 * 109.38593 * 185.70501 * 9 7 6 11 11 C 1.53035 * 109.53891 * 61.23771 * 10 9 7 12 12 C 1.53186 * 109.31504 * 298.63812 * 11 10 9 13 13 N 1.46922 * 108.77558 * 54.63401 * 12 11 10 14 14 C 1.36942 * 120.63425 * 126.36954 * 13 12 11 15 15 H 1.07999 * 120.00368 * 211.13868 * 14 13 12 16 16 C 1.38813 * 119.99609 * 31.14186 * 14 13 12 17 17 N 1.31613 * 120.00125 * 22.78076 * 16 14 13 18 18 Si 1.86800 * 119.99864 * 202.50568 * 16 14 13 19 19 H 1.48498 * 109.47406 * 180.27483 * 18 16 14 20 20 H 1.48503 * 109.47101 * 300.27653 * 18 16 14 21 21 H 1.48507 * 109.46726 * 60.27341 * 18 16 14 22 22 H 1.09003 * 109.47322 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46893 * 300.00041 * 1 2 3 24 24 H 1.09002 * 109.46970 * 59.99720 * 1 2 3 25 25 H 1.08995 * 109.46756 * 60.00167 * 3 2 1 26 26 H 1.08997 * 109.46984 * 300.00226 * 3 2 1 27 27 H 1.09003 * 109.47384 * 304.99681 * 4 3 2 28 28 H 1.09000 * 109.46897 * 185.00119 * 4 3 2 29 29 H 1.00899 * 111.00350 * 303.95857 * 5 4 3 30 30 H 1.08994 * 109.46970 * 60.00138 * 6 5 4 31 31 H 1.09003 * 109.47428 * 300.00167 * 6 5 4 32 32 H 1.09005 * 109.56179 * 65.66583 * 9 7 6 33 33 H 1.08999 * 109.35766 * 305.61903 * 9 7 6 34 34 H 1.09005 * 109.45973 * 301.21682 * 10 9 7 35 35 H 1.08997 * 109.46015 * 181.26815 * 10 9 7 36 36 H 1.09002 * 109.49997 * 178.68212 * 11 10 9 37 37 H 1.08999 * 109.51972 * 58.60571 * 11 10 9 38 38 H 1.08999 * 109.58691 * 294.84306 * 12 11 10 39 39 H 1.09000 * 109.58632 * 174.42042 * 12 11 10 40 40 H 0.96998 * 120.00391 * 5.09948 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 5.4395 0.4307 -1.2925 7 6 5.8603 -0.2190 -2.6122 8 1 5.4315 -1.2185 -2.6828 9 6 7.3838 -0.3142 -2.6711 10 6 7.8076 -0.8319 -4.0474 11 6 7.3410 0.1461 -5.1281 12 6 5.8125 0.2432 -5.0977 13 7 5.3883 0.6001 -3.7370 14 6 4.5730 1.6789 -3.5206 15 1 4.6536 2.2411 -2.6021 16 6 3.6430 2.0498 -4.4820 17 7 3.2184 1.1677 -5.3618 18 14 2.9882 3.7988 -4.5224 19 1 2.0098 3.9357 -5.6311 20 1 2.3206 4.1073 -3.2322 21 1 4.1137 4.7438 -4.7358 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8515 0.5682 0.8410 28 1 3.9785 2.1765 0.0889 29 1 3.5293 -0.3311 -1.3939 30 1 5.7690 -0.1907 -0.4599 31 1 5.8955 1.4175 -1.2120 32 1 7.7367 -0.9992 -1.9001 33 1 7.8142 0.6735 -2.5055 34 1 7.3568 -1.8088 -4.2226 35 1 8.8933 -0.9216 -4.0831 36 1 7.6634 -0.2113 -6.1060 37 1 7.7718 1.1295 -4.9399 38 1 5.3797 -0.7179 -5.3751 39 1 5.4811 1.0110 -5.7969 40 1 3.4980 0.2414 -5.2936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:27 Heat of formation + Delta-G solvation = -24.277366 kcal Electronic energy + Delta-G solvation = -18874.628530 eV Core-core repulsion = 16111.043048 eV Total energy + Delta-G solvation = -2763.585482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.19245 -37.57140 -34.99408 -33.04124 -31.32637 -29.42957 -28.46305 -26.04384 -25.05530 -23.73363 -21.88758 -21.30305 -20.50181 -18.93733 -16.82561 -16.34075 -15.73782 -15.40211 -14.83346 -14.13078 -13.92599 -13.78626 -13.49701 -13.38570 -13.10679 -12.38196 -12.22335 -12.09226 -11.62231 -11.33264 -11.23029 -11.08604 -10.87489 -10.62354 -10.48188 -10.19798 -10.10465 -9.90400 -9.67724 -9.55166 -9.38155 -8.86495 -8.10268 -7.37432 -6.51053 -5.64650 -2.82935 3.63380 3.66848 3.84503 4.07609 4.75411 4.85709 5.28969 5.35389 5.50744 5.54824 5.61580 5.63432 5.64902 5.68144 5.76017 5.81296 5.88355 5.97936 6.07497 6.18561 6.19156 6.28263 6.33182 6.37361 6.43136 6.57911 6.66992 6.74921 6.84028 7.03689 7.27592 7.38272 7.40778 7.83125 8.22695 8.45142 8.96047 9.45989 10.21798 10.61484 11.62754 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.009671 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.996789 B = 2894.635481 C = 3949.196237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.393 6.393 3 C 0.064 3.936 4 C 0.065 3.935 5 N -0.641 5.641 6 C 0.078 3.922 7 C 0.173 3.827 8 H 0.017 0.983 9 C -0.129 4.129 10 C -0.107 4.107 11 C -0.138 4.138 12 C 0.154 3.846 13 N -0.587 5.587 14 C -0.283 4.283 15 H 0.067 0.933 16 C -0.036 4.036 17 N -0.939 5.939 18 Si 1.059 2.941 19 H -0.292 1.292 20 H -0.298 1.298 21 H -0.301 1.301 22 H 0.080 0.920 23 H 0.034 0.966 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.078 0.922 29 H 0.340 0.660 30 H 0.009 0.991 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.012 0.988 39 H 0.077 0.923 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -1.925 9.143 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.065 4.065 5 N -0.272 5.272 6 C -0.051 4.051 7 C 0.066 3.934 8 H 0.034 0.966 9 C -0.169 4.169 10 C -0.145 4.145 11 C -0.177 4.177 12 C 0.028 3.972 13 N -0.312 5.312 14 C -0.414 4.414 15 H 0.085 0.915 16 C -0.235 4.235 17 N -0.582 5.582 18 Si 0.892 3.108 19 H -0.218 1.218 20 H -0.226 1.226 21 H -0.229 1.229 22 H 0.099 0.901 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.030 0.970 39 H 0.095 0.905 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.003 -0.404 7.982 8.055 hybrid contribution 0.857 -1.593 1.575 2.398 sum 1.860 -1.997 9.556 9.938 Atomic orbital electron populations 1.22658 0.81536 1.02218 0.99724 1.87826 1.19366 1.28577 1.95385 1.22628 0.93983 0.84496 1.00203 1.21900 0.92841 1.00064 0.91694 1.60602 1.05622 1.29715 1.31262 1.21862 0.88634 0.99547 0.95094 1.20382 0.91053 0.93218 0.88719 0.96554 1.21916 0.98538 1.00244 0.96158 1.21356 0.98618 0.98751 0.95767 1.22081 1.00273 0.98668 0.96691 1.20896 0.89600 0.98351 0.88345 1.44161 1.55514 1.31759 0.99734 1.19909 1.12506 1.03174 1.05763 0.91510 1.25506 0.94840 1.05018 0.98137 1.70740 1.43504 1.03360 1.40587 0.83581 0.75704 0.76337 0.75182 1.21811 1.22594 1.22861 0.90141 0.94761 0.93824 0.93916 0.91640 0.96274 0.90373 0.84142 0.97320 0.91397 0.93513 0.92305 0.93060 0.93751 0.93529 0.92563 0.97029 0.90512 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.58 16 2 O -0.39 -6.61 10.22 -35.23 -0.36 -6.97 16 3 C 0.06 1.03 6.28 37.16 0.23 1.27 16 4 C 0.06 1.09 6.10 -3.83 -0.02 1.07 16 5 N -0.64 -12.95 3.98 -113.78 -0.45 -13.40 16 6 C 0.08 1.50 4.44 -3.82 -0.02 1.49 16 7 C 0.17 3.62 3.12 -67.82 -0.21 3.41 16 8 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 9 C -0.13 -2.30 5.34 -26.84 -0.14 -2.45 16 10 C -0.11 -1.86 5.89 -26.69 -0.16 -2.02 16 11 C -0.14 -2.69 6.08 -26.62 -0.16 -2.85 16 12 C 0.15 3.67 4.69 -3.72 -0.02 3.65 16 13 N -0.59 -14.43 2.82 -165.03 -0.47 -14.89 16 14 C -0.28 -7.62 7.42 -15.06 -0.11 -7.73 16 15 H 0.07 1.82 5.89 -52.49 -0.31 1.51 16 16 C -0.04 -1.02 4.72 -17.43 -0.08 -1.10 16 17 N -0.94 -28.67 12.53 55.49 0.70 -27.97 16 18 Si 1.06 26.14 29.97 -169.99 -5.10 21.04 16 19 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.34 7.19 8.29 -39.29 -0.33 6.87 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 1.36 7.52 -51.93 -0.39 0.97 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.01 0.29 7.82 -51.93 -0.41 -0.12 16 39 H 0.08 2.06 6.49 -51.93 -0.34 1.72 16 40 H 0.26 8.17 6.63 -40.82 -0.27 7.90 16 LS Contribution 310.70 15.07 4.68 4.68 Total: -1.00 -30.31 310.70 -7.75 -38.06 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.18 Total: 3.13 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 0.42 Total: -3.69 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.22 Total: -56.27 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.36 Total: -6.97 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.10 Total: 21.04 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.31 -7.75 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.785 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds