Wall clock time and date at job start Mon Mar 30 2020 04:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99881 * 2 1 4 4 C 1.52998 * 109.46758 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47358 * 64.99914 * 4 3 2 6 6 C 1.46901 * 111.00064 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47251 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.69888 * 298.25004 * 7 6 5 9 9 C 1.52756 * 109.51248 * 178.12849 * 7 6 5 10 10 C 1.53037 * 109.38593 * 185.70501 * 9 7 6 11 11 C 1.53035 * 109.53891 * 61.23771 * 10 9 7 12 12 C 1.53186 * 109.31504 * 298.63812 * 11 10 9 13 13 N 1.46922 * 108.77558 * 54.63401 * 12 11 10 14 14 C 1.36942 * 120.63425 * 126.36954 * 13 12 11 15 15 H 1.07999 * 120.00368 * 211.13868 * 14 13 12 16 16 C 1.38813 * 119.99609 * 31.14186 * 14 13 12 17 17 N 1.31613 * 120.00125 * 22.78076 * 16 14 13 18 18 Si 1.86800 * 119.99864 * 202.50568 * 16 14 13 19 19 H 1.48498 * 109.47406 * 180.27483 * 18 16 14 20 20 H 1.48503 * 109.47101 * 300.27653 * 18 16 14 21 21 H 1.48507 * 109.46726 * 60.27341 * 18 16 14 22 22 H 1.09003 * 109.47322 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46893 * 300.00041 * 1 2 3 24 24 H 1.09002 * 109.46970 * 59.99720 * 1 2 3 25 25 H 1.08995 * 109.46756 * 60.00167 * 3 2 1 26 26 H 1.08997 * 109.46984 * 300.00226 * 3 2 1 27 27 H 1.09003 * 109.47384 * 304.99681 * 4 3 2 28 28 H 1.09000 * 109.46897 * 185.00119 * 4 3 2 29 29 H 1.00899 * 111.00350 * 303.95857 * 5 4 3 30 30 H 1.08994 * 109.46970 * 60.00138 * 6 5 4 31 31 H 1.09003 * 109.47428 * 300.00167 * 6 5 4 32 32 H 1.09005 * 109.56179 * 65.66583 * 9 7 6 33 33 H 1.08999 * 109.35766 * 305.61903 * 9 7 6 34 34 H 1.09005 * 109.45973 * 301.21682 * 10 9 7 35 35 H 1.08997 * 109.46015 * 181.26815 * 10 9 7 36 36 H 1.09002 * 109.49997 * 178.68212 * 11 10 9 37 37 H 1.08999 * 109.51972 * 58.60571 * 11 10 9 38 38 H 1.08999 * 109.58691 * 294.84306 * 12 11 10 39 39 H 1.09000 * 109.58632 * 174.42042 * 12 11 10 40 40 H 0.96998 * 120.00391 * 5.09948 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 5.4395 0.4307 -1.2925 7 6 5.8603 -0.2190 -2.6122 8 1 5.4315 -1.2185 -2.6828 9 6 7.3838 -0.3142 -2.6711 10 6 7.8076 -0.8319 -4.0474 11 6 7.3410 0.1461 -5.1281 12 6 5.8125 0.2432 -5.0977 13 7 5.3883 0.6001 -3.7370 14 6 4.5730 1.6789 -3.5206 15 1 4.6536 2.2411 -2.6021 16 6 3.6430 2.0498 -4.4820 17 7 3.2184 1.1677 -5.3618 18 14 2.9882 3.7988 -4.5224 19 1 2.0098 3.9357 -5.6311 20 1 2.3206 4.1073 -3.2322 21 1 4.1137 4.7438 -4.7358 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8515 0.5682 0.8410 28 1 3.9785 2.1765 0.0889 29 1 3.5293 -0.3311 -1.3939 30 1 5.7690 -0.1907 -0.4599 31 1 5.8955 1.4175 -1.2120 32 1 7.7367 -0.9992 -1.9001 33 1 7.8142 0.6735 -2.5055 34 1 7.3568 -1.8088 -4.2226 35 1 8.8933 -0.9216 -4.0831 36 1 7.6634 -0.2113 -6.1060 37 1 7.7718 1.1295 -4.9399 38 1 5.3797 -0.7179 -5.3751 39 1 5.4811 1.0110 -5.7969 40 1 3.4980 0.2414 -5.2936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082646454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:27 Heat of formation + Delta-G solvation = -44.267339 kcal Electronic energy + Delta-G solvation = -18875.495361 eV Core-core repulsion = 16111.043048 eV Total energy + Delta-G solvation = -2764.452313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.81819 -38.89958 -36.47876 -34.95853 -32.87759 -31.34434 -29.87750 -27.29695 -26.83890 -25.36575 -23.64267 -22.69973 -22.14168 -20.65788 -18.79768 -17.67359 -17.11100 -16.82996 -16.26081 -15.82245 -15.43664 -15.35402 -15.18925 -14.98326 -14.88195 -13.90192 -13.74488 -13.60994 -13.05178 -12.96469 -12.71586 -12.55263 -12.47664 -12.28135 -12.00570 -11.91043 -11.85275 -11.62397 -11.47553 -11.18037 -10.79109 -10.59395 -10.19699 -8.96037 -8.53965 -7.81511 -4.99894 1.61750 1.70777 1.86605 2.83965 2.90606 3.31717 3.55610 3.68394 4.05961 4.12929 4.16910 4.22708 4.34709 4.37747 4.41719 4.53222 4.53691 4.59176 4.63540 4.69755 4.75614 4.78988 4.87805 4.92888 4.97853 5.05172 5.12085 5.21247 5.33221 5.37911 5.39662 5.66509 6.21210 6.29854 6.42884 6.62878 6.75230 7.38221 8.12230 8.53757 9.41681 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.009671 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.996789 B = 2894.635481 C = 3949.196237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.415 6.415 3 C 0.067 3.933 4 C 0.067 3.933 5 N -0.669 5.669 6 C 0.084 3.916 7 C 0.166 3.834 8 H 0.003 0.997 9 C -0.121 4.121 10 C -0.104 4.104 11 C -0.128 4.128 12 C 0.158 3.842 13 N -0.603 5.603 14 C -0.257 4.257 15 H 0.067 0.933 16 C -0.096 4.096 17 N -0.974 5.974 18 Si 1.101 2.899 19 H -0.306 1.306 20 H -0.281 1.281 21 H -0.288 1.288 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.330 0.670 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.052 0.948 38 H -0.008 1.008 39 H 0.038 0.962 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.354 -1.844 11.182 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.335 6.335 3 C -0.010 4.010 4 C -0.062 4.062 5 N -0.299 5.299 6 C -0.045 4.045 7 C 0.060 3.940 8 H 0.020 0.980 9 C -0.160 4.160 10 C -0.141 4.141 11 C -0.167 4.167 12 C 0.032 3.968 13 N -0.328 5.328 14 C -0.388 4.388 15 H 0.085 0.915 16 C -0.288 4.288 17 N -0.621 5.621 18 Si 0.930 3.070 19 H -0.234 1.234 20 H -0.208 1.208 21 H -0.215 1.215 22 H 0.114 0.886 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.147 0.853 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.010 0.990 39 H 0.057 0.943 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.474 -0.319 10.060 10.364 hybrid contribution 0.413 -1.685 1.005 2.005 sum 2.887 -2.004 11.065 11.609 Atomic orbital electron populations 1.22848 0.79867 1.03522 1.00396 1.87788 1.21291 1.28906 1.95519 1.22592 0.93662 0.84446 1.00278 1.21952 0.93317 1.00242 0.90731 1.60534 1.06200 1.29355 1.33831 1.21799 0.88253 0.99454 0.94988 1.20623 0.93274 0.91920 0.88198 0.97974 1.21830 0.95595 1.01081 0.97529 1.21354 1.00669 0.97718 0.94378 1.21937 0.96318 0.99461 0.98958 1.20737 0.92731 0.95887 0.87406 1.44409 1.55383 1.32052 1.00960 1.20040 1.10979 1.02967 1.04782 0.91538 1.26572 0.96076 1.07363 0.98824 1.70863 1.46010 1.02740 1.42530 0.82992 0.75355 0.73352 0.75293 1.23352 1.20790 1.21521 0.88646 0.92253 0.94916 0.90705 0.94583 0.94590 0.89738 0.85253 0.94553 0.92057 0.90352 0.92462 0.93108 0.90307 0.91592 0.92963 0.99005 0.94347 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.42 -13.59 10.22 -148.98 -1.52 -15.11 16 3 C 0.07 2.09 6.28 71.98 0.45 2.54 16 4 C 0.07 2.14 6.10 86.30 0.53 2.67 16 5 N -0.67 -26.59 3.98 -513.89 -2.04 -28.64 16 6 C 0.08 3.10 4.44 86.30 0.38 3.48 16 7 C 0.17 6.74 3.12 44.83 0.14 6.88 16 8 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 9 C -0.12 -3.95 5.34 30.53 0.16 -3.79 16 10 C -0.10 -3.28 5.89 30.62 0.18 -3.10 16 11 C -0.13 -4.80 6.08 30.67 0.19 -4.62 16 12 C 0.16 7.72 4.69 86.36 0.40 8.12 16 13 N -0.60 -29.84 2.82 -676.04 -1.91 -31.75 16 14 C -0.26 -13.93 7.42 84.03 0.62 -13.31 16 15 H 0.07 3.60 5.89 -2.91 -0.02 3.58 16 16 C -0.10 -5.57 4.72 84.86 0.40 -5.17 16 17 N -0.97 -61.96 12.53 21.65 0.27 -61.69 16 18 Si 1.10 53.71 29.97 68.60 2.06 55.77 16 19 H -0.31 -15.59 7.11 99.48 0.71 -14.89 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.33 14.04 8.29 -89.69 -0.74 13.30 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 2.33 7.52 -2.39 -0.02 2.32 16 32 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H -0.01 -0.41 7.82 -2.39 -0.02 -0.43 16 39 H 0.04 2.14 6.49 -2.39 -0.02 2.12 16 40 H 0.25 16.02 6.63 -92.71 -0.61 15.40 16 Total: -1.00 -67.17 310.70 1.97 -65.21 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.40 Total: 20.51 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 4.71 Total: -4.30 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -3.68 Total: -122.08 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.52 Total: -15.11 kcal Atomic # 14 Polarization: 53.71 SS G_CDS: 2.06 Total: 55.77 kcal Total: -67.17 1.97 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.942 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds