Wall clock time and date at job start Mon Mar 30 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86797 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47539 * 270.00577 * 3 2 1 5 5 H 1.48505 * 109.46975 * 30.00447 * 3 2 1 6 6 H 1.48507 * 109.47194 * 150.00000 * 3 2 1 7 7 C 1.38652 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99919 * 180.02562 * 7 2 1 9 9 O 1.34828 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.35770 * 116.99509 * 185.07178 * 9 7 2 11 11 C 1.39233 * 120.49563 * 354.48338 * 10 9 7 12 12 C 1.38526 * 118.37596 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.25668 * 359.97438 * 12 11 10 14 14 N 1.31889 * 120.92964 * 0.02833 * 13 12 11 15 15 C 1.31881 * 121.78190 * 359.96943 * 14 13 12 16 16 Br 1.89093 * 119.68098 * 180.02562 * 15 14 13 17 17 H 0.96995 * 120.00080 * 359.97438 * 1 2 3 18 18 H 1.07997 * 120.81022 * 0.29630 * 11 10 9 19 19 H 1.08004 * 120.37560 * 180.02562 * 12 11 10 20 20 H 1.08001 * 119.53598 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1059 11 6 3.4614 -3.4495 0.0940 12 6 4.1682 -4.6357 0.2049 13 6 3.4756 -5.8264 0.3232 14 7 2.1569 -5.8457 0.3312 15 6 1.4454 -4.7401 0.2282 16 35 -0.4429 -4.8366 0.2470 17 1 -0.4850 0.8400 0.0004 18 1 3.9768 -2.5047 0.0051 19 1 5.2482 -4.6304 0.1997 20 1 4.0222 -6.7539 0.4095 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083454429.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:09 Heat of formation + Delta-G solvation = -11.316998 kcal Electronic energy + Delta-G solvation = -10185.406079 eV Core-core repulsion = 8007.613039 eV Total energy + Delta-G solvation = -2177.793040 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.29752 -38.98086 -34.44389 -33.47849 -32.06685 -30.10094 -27.57218 -24.18755 -23.80823 -20.05798 -19.07507 -17.42269 -17.05610 -16.23781 -16.06407 -15.21934 -14.67378 -14.25751 -14.20241 -13.60226 -12.85783 -12.74199 -12.14446 -11.85743 -11.72489 -11.17893 -10.96113 -10.50438 -10.39606 -9.26919 -8.51362 -6.21167 0.09943 0.44975 0.67883 1.37708 1.46816 1.55088 2.13252 2.73094 3.04585 3.19961 3.79231 4.06691 4.19896 4.40201 4.59619 4.95058 5.24306 5.28891 5.73126 5.88684 6.87722 6.90977 7.58225 8.68612 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.010758 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.666396 B = 2602.033968 C = 3499.756790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.012 4.012 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.424 4.424 8 H 0.111 0.889 9 O -0.189 6.189 10 C 0.097 3.903 11 C -0.196 4.196 12 C -0.091 4.091 13 C 0.017 3.983 14 N -0.439 5.439 15 C 0.019 3.981 16 Br -0.029 7.029 17 H 0.276 0.724 18 H 0.151 0.849 19 H 0.181 0.819 20 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.685 -6.009 0.479 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.212 4.212 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.500 4.500 8 H 0.128 0.872 9 O -0.091 6.091 10 C 0.039 3.961 11 C -0.224 4.224 12 C -0.110 4.110 13 C -0.144 4.144 14 N -0.150 5.150 15 C -0.197 4.197 16 Br 0.055 6.945 17 H 0.085 0.915 18 H 0.168 0.832 19 H 0.198 0.802 20 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.083 -6.622 0.544 8.366 hybrid contribution 0.707 1.480 -0.118 1.644 sum 5.790 -5.142 0.426 7.755 Atomic orbital electron populations 1.70200 1.08089 1.29199 1.46247 1.26611 0.96775 1.02696 0.95120 0.84567 0.77969 0.74304 0.79283 1.18807 1.19897 1.17202 1.21970 0.92942 0.80940 1.54128 0.87174 1.84073 1.34948 1.11906 1.78193 1.20368 0.92509 0.88223 0.94983 1.21872 0.91897 1.01588 1.07052 1.22434 1.02948 0.91117 0.94528 1.23075 0.88066 0.99893 1.03403 1.67211 1.10070 1.27789 1.09930 1.21684 0.92408 0.89274 1.16359 1.96548 1.01220 1.98875 1.97894 0.91515 0.83164 0.80186 0.78674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.55 13.67 21.61 0.30 -52.26 14 2 C -0.01 -0.61 5.49 84.83 0.47 -0.15 14 3 Si 1.02 39.79 29.55 68.60 2.03 41.82 14 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 14 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 14 6 H -0.25 -8.85 7.11 99.48 0.71 -8.14 14 7 C -0.42 -22.85 9.50 67.92 0.65 -22.21 14 8 H 0.11 5.25 5.26 -2.91 -0.02 5.23 14 9 O -0.19 -10.63 9.11 -22.94 -0.21 -10.84 14 10 C 0.10 4.66 6.65 22.69 0.15 4.81 14 11 C -0.20 -7.63 9.27 22.58 0.21 -7.42 14 12 C -0.09 -2.65 10.10 22.34 0.23 -2.43 14 13 C 0.02 0.51 11.18 84.69 0.95 1.46 14 14 N -0.44 -17.41 10.32 -190.23 -1.96 -19.37 14 15 C 0.02 0.86 7.19 84.86 0.61 1.47 14 16 Br -0.03 -1.25 33.34 -20.37 -0.68 -1.93 14 17 H 0.28 14.73 8.31 -92.71 -0.77 13.96 14 18 H 0.15 5.54 5.76 -2.91 -0.02 5.52 14 19 H 0.18 3.38 8.06 -2.91 -0.02 3.35 14 20 H 0.20 4.10 8.06 -2.91 -0.02 4.07 14 Total: -1.00 -65.92 212.13 4.00 -61.92 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.27 Total: 5.12 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.25 Total: -24.47 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.67 Total: -71.63 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.21 Total: -10.84 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.68 Total: -1.93 kcal Total: -65.92 4.00 -61.92 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083454429.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.605 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds