Wall clock time and date at job start Mon Mar 30 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 111.00204 * 2 1 4 4 C 1.46900 * 111.00124 * 123.95721 * 2 1 3 5 5 C 1.53002 * 109.47084 * 74.94009 * 4 2 1 6 6 H 1.09004 * 110.46156 * 306.60095 * 5 4 2 7 7 C 1.54381 * 110.41171 * 69.01382 * 5 4 2 8 8 C 1.54265 * 105.06096 * 142.63295 * 7 5 4 9 9 H 1.08996 * 110.40491 * 241.06139 * 8 7 5 10 10 O 1.42901 * 110.32398 * 118.89309 * 8 7 5 11 11 C 1.54378 * 105.05564 * 359.97438 * 8 7 5 12 12 N 1.48554 * 104.59982 * 336.14761 * 11 8 7 13 13 C 1.46897 * 111.00108 * 159.04020 * 12 11 8 14 14 C 1.53002 * 109.47034 * 75.43418 * 13 12 11 15 15 C 1.50700 * 109.46913 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00271 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00366 * 0.27555 * 17 15 14 19 19 Si 1.86802 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47531 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47225 * 120.00332 * 19 17 15 22 22 H 1.48507 * 109.47104 * 239.99845 * 19 17 15 23 23 H 1.09004 * 109.46554 * 290.65380 * 1 2 3 24 24 H 1.08996 * 109.46971 * 50.64891 * 1 2 3 25 25 H 1.08993 * 109.46953 * 170.65863 * 1 2 3 26 26 H 1.08994 * 109.47391 * 183.95553 * 3 2 1 27 27 H 1.09000 * 109.47318 * 303.95973 * 3 2 1 28 28 H 1.09006 * 109.46978 * 63.95399 * 3 2 1 29 29 H 1.08992 * 109.47109 * 314.94090 * 4 2 1 30 30 H 1.09004 * 109.46783 * 194.93711 * 4 2 1 31 31 H 1.09000 * 110.32606 * 23.73295 * 7 5 4 32 32 H 1.09001 * 110.32218 * 261.52452 * 7 5 4 33 33 H 0.96700 * 113.99741 * 182.90788 * 10 8 7 34 34 H 1.09003 * 110.40933 * 217.36781 * 11 8 7 35 35 H 1.09002 * 110.41271 * 94.92699 * 11 8 7 36 36 H 1.08999 * 109.47287 * 315.43059 * 13 12 11 37 37 H 1.09000 * 109.47509 * 195.43148 * 13 12 11 38 38 H 1.08996 * 109.46898 * 59.99871 * 14 13 12 39 39 H 1.08997 * 109.46971 * 299.99738 * 14 13 12 40 40 H 0.96998 * 119.99885 * 359.72679 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8284 -2.2624 0.8658 6 1 0.7926 -2.4907 0.6141 7 6 2.7704 -2.7116 -0.2718 8 6 3.2536 -4.1177 0.1395 9 1 4.3370 -4.1275 0.2587 10 8 2.8533 -5.0844 -0.8338 11 6 2.5633 -4.3994 1.4913 12 7 2.2625 -3.0544 2.0456 13 6 1.1952 -3.1266 3.0524 14 6 1.7577 -3.7082 4.3510 15 6 0.6630 -3.7817 5.3841 16 1 -0.3343 -3.4474 5.1389 17 6 0.9343 -4.2767 6.6420 18 7 2.1497 -4.6796 6.9421 19 14 -0.4228 -4.3684 7.9224 20 1 -1.6877 -3.8515 7.3410 21 1 -0.6114 -5.7799 8.3435 22 1 -0.0479 -3.5462 9.1009 23 1 -0.3632 0.3625 0.9617 24 1 -0.3633 0.6516 -0.7946 25 1 -0.3633 -1.0140 -0.1668 26 1 3.0828 1.3432 -0.0709 27 1 1.5899 1.9164 -0.8524 28 1 1.7045 1.8723 0.9234 29 1 1.4481 -0.4975 2.0409 30 1 3.0528 -0.5370 1.2716 31 1 3.6167 -2.0295 -0.3542 32 1 2.2280 -2.7589 -1.2161 33 1 3.0911 -5.9936 -0.6059 34 1 3.2355 -4.9427 2.1554 35 1 1.6424 -4.9620 1.3379 36 1 0.3923 -3.7661 2.6857 37 1 0.8055 -2.1263 3.2412 38 1 2.5606 -3.0687 4.7177 39 1 2.1474 -4.7085 4.1623 40 1 2.8543 -4.6323 6.2772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085082661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:35 Heat of formation + Delta-G solvation = -50.307722 kcal Electronic energy + Delta-G solvation = -18229.608748 eV Core-core repulsion = 15464.894505 eV Total energy + Delta-G solvation = -2764.714243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.44046 -37.15969 -35.81906 -33.67130 -31.44734 -29.64285 -28.03337 -27.62920 -25.63789 -23.90091 -22.07887 -21.58728 -20.15872 -19.69569 -17.47093 -16.74875 -15.76135 -15.52464 -15.23908 -14.56542 -14.23874 -13.87029 -13.72133 -13.54281 -13.27048 -12.91039 -12.49559 -12.22486 -12.10804 -11.85180 -11.74401 -11.58745 -11.30717 -10.96159 -10.89581 -10.77693 -10.45490 -10.14776 -10.02818 -9.82584 -9.73228 -8.57280 -8.40799 -8.31483 -8.03180 -6.36474 -4.05274 3.42932 3.47155 3.60225 3.75630 4.24838 4.51578 4.64530 4.81459 4.94902 5.05098 5.12764 5.26533 5.34410 5.40868 5.41845 5.49673 5.58566 5.70413 5.76834 5.82232 5.87670 5.91879 5.97767 6.08093 6.13230 6.21945 6.25854 6.39629 6.79142 6.95036 6.98047 7.19386 7.26250 7.55113 7.66451 7.70695 8.23335 8.46990 8.88891 9.67265 11.04796 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.005968 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.361201 B = 4690.420318 C = 5655.972682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.547 5.547 3 C 0.026 3.974 4 C 0.069 3.931 5 C 0.068 3.932 6 H 0.050 0.950 7 C -0.096 4.096 8 C 0.093 3.907 9 H 0.065 0.935 10 O -0.568 6.568 11 C 0.007 3.993 12 N -0.505 5.505 13 C 0.061 3.939 14 C 0.019 3.981 15 C -0.604 4.604 16 H 0.047 0.953 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.074 2.926 20 H -0.290 1.290 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.027 0.973 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.376 0.624 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.015 0.985 39 H 0.006 0.994 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 6.358 -14.986 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.271 5.271 3 C -0.122 4.122 4 C -0.059 4.059 5 C -0.041 4.041 6 H 0.068 0.932 7 C -0.134 4.134 8 C 0.034 3.966 9 H 0.083 0.917 10 O -0.373 6.373 11 C -0.122 4.122 12 N -0.230 5.230 13 C -0.067 4.067 14 C -0.019 4.019 15 C -0.643 4.643 16 H 0.065 0.935 17 C -0.188 4.188 18 N -0.550 5.550 19 Si 0.902 3.098 20 H -0.216 1.216 21 H -0.213 1.213 22 H -0.213 1.213 23 H 0.045 0.955 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.223 0.777 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.024 0.976 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.558 6.470 -13.882 15.326 hybrid contribution -0.554 -0.023 -0.785 0.961 sum 0.005 6.447 -14.667 16.022 Atomic orbital electron populations 1.22435 0.87572 1.02406 1.00211 1.61891 1.07890 1.13547 1.43762 1.22368 1.00719 0.88838 1.00274 1.22041 1.00674 0.92385 0.90776 1.22524 0.97488 0.93435 0.90673 0.93247 1.22177 0.99498 0.93273 0.98407 1.22683 0.97483 0.89366 0.87044 0.91726 1.86520 1.83800 1.19505 1.47516 1.23786 1.00279 0.92540 0.95551 1.65334 1.39793 1.09188 1.08713 1.22365 0.91010 1.00089 0.93192 1.19146 0.96806 0.95105 0.90806 1.22066 0.96582 1.46612 0.99002 0.93456 1.25820 1.00791 0.93575 0.98595 1.70707 1.01679 1.44535 1.38051 0.83484 0.74269 0.76699 0.75315 1.21609 1.21329 1.21297 0.95465 0.91651 0.91363 0.91360 0.91581 0.95702 0.94009 0.90144 0.90388 0.90361 0.77686 0.89840 0.93134 0.95702 0.92081 0.96656 0.97604 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.41 60.07 0.57 0.82 16 2 N -0.55 -6.81 4.81 -251.26 -1.21 -8.02 16 3 C 0.03 0.27 9.51 60.06 0.57 0.84 16 4 C 0.07 1.00 4.57 -3.82 -0.02 0.98 16 5 C 0.07 1.06 2.34 -66.06 -0.15 0.90 16 6 H 0.05 0.82 6.72 -51.93 -0.35 0.47 16 7 C -0.10 -1.35 6.22 -25.35 -0.16 -1.51 16 8 C 0.09 1.31 4.42 -25.35 -0.11 1.20 16 9 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 10 O -0.57 -7.57 13.27 -35.23 -0.47 -8.04 16 11 C 0.01 0.12 5.68 -2.19 -0.01 0.11 16 12 N -0.50 -9.27 5.01 -222.12 -1.11 -10.38 16 13 C 0.06 1.31 4.72 -3.82 -0.02 1.30 16 14 C 0.02 0.49 4.41 -27.88 -0.12 0.37 16 15 C -0.60 -17.47 9.11 -34.44 -0.31 -17.78 16 16 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -28.31 13.65 55.43 0.76 -27.56 16 19 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H 0.03 0.32 7.98 -51.93 -0.41 -0.09 16 24 H 0.06 0.63 8.03 -51.93 -0.42 0.22 16 25 H 0.07 0.82 6.95 -51.93 -0.36 0.46 16 26 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.67 6.95 -51.93 -0.36 0.31 16 30 H 0.08 1.15 7.75 -51.93 -0.40 0.74 16 31 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 32 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 33 H 0.38 3.48 9.11 45.56 0.41 3.89 16 34 H 0.08 1.43 7.87 -51.93 -0.41 1.02 16 35 H 0.05 0.88 7.68 -51.93 -0.40 0.48 16 36 H 0.02 0.55 7.75 -51.93 -0.40 0.14 16 37 H 0.06 1.32 7.10 -51.93 -0.37 0.95 16 38 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 39 H 0.01 0.16 7.38 -51.93 -0.38 -0.23 16 40 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -31.95 316.20 -8.48 -40.44 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.26 Total: 0.61 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 0.13 Total: -12.40 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -1.57 Total: -45.95 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.47 Total: -8.04 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.95 -8.48 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.871 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds