Wall clock time and date at job start Mon Mar 30 2020 04:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 111.00204 * 2 1 4 4 C 1.46900 * 111.00124 * 123.95721 * 2 1 3 5 5 C 1.53002 * 109.47084 * 74.94009 * 4 2 1 6 6 H 1.09004 * 110.46156 * 306.60095 * 5 4 2 7 7 C 1.54381 * 110.41171 * 69.01382 * 5 4 2 8 8 C 1.54265 * 105.06096 * 142.63295 * 7 5 4 9 9 H 1.08996 * 110.40491 * 241.06139 * 8 7 5 10 10 O 1.42901 * 110.32398 * 118.89309 * 8 7 5 11 11 C 1.54378 * 105.05564 * 359.97438 * 8 7 5 12 12 N 1.48554 * 104.59982 * 336.14761 * 11 8 7 13 13 C 1.46897 * 111.00108 * 159.04020 * 12 11 8 14 14 C 1.53002 * 109.47034 * 75.43418 * 13 12 11 15 15 C 1.50700 * 109.46913 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00271 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00366 * 0.27555 * 17 15 14 19 19 Si 1.86802 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47531 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47225 * 120.00332 * 19 17 15 22 22 H 1.48507 * 109.47104 * 239.99845 * 19 17 15 23 23 H 1.09004 * 109.46554 * 290.65380 * 1 2 3 24 24 H 1.08996 * 109.46971 * 50.64891 * 1 2 3 25 25 H 1.08993 * 109.46953 * 170.65863 * 1 2 3 26 26 H 1.08994 * 109.47391 * 183.95553 * 3 2 1 27 27 H 1.09000 * 109.47318 * 303.95973 * 3 2 1 28 28 H 1.09006 * 109.46978 * 63.95399 * 3 2 1 29 29 H 1.08992 * 109.47109 * 314.94090 * 4 2 1 30 30 H 1.09004 * 109.46783 * 194.93711 * 4 2 1 31 31 H 1.09000 * 110.32606 * 23.73295 * 7 5 4 32 32 H 1.09001 * 110.32218 * 261.52452 * 7 5 4 33 33 H 0.96700 * 113.99741 * 182.90788 * 10 8 7 34 34 H 1.09003 * 110.40933 * 217.36781 * 11 8 7 35 35 H 1.09002 * 110.41271 * 94.92699 * 11 8 7 36 36 H 1.08999 * 109.47287 * 315.43059 * 13 12 11 37 37 H 1.09000 * 109.47509 * 195.43148 * 13 12 11 38 38 H 1.08996 * 109.46898 * 59.99871 * 14 13 12 39 39 H 1.08997 * 109.46971 * 299.99738 * 14 13 12 40 40 H 0.96998 * 119.99885 * 359.72679 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8284 -2.2624 0.8658 6 1 0.7926 -2.4907 0.6141 7 6 2.7704 -2.7116 -0.2718 8 6 3.2536 -4.1177 0.1395 9 1 4.3370 -4.1275 0.2587 10 8 2.8533 -5.0844 -0.8338 11 6 2.5633 -4.3994 1.4913 12 7 2.2625 -3.0544 2.0456 13 6 1.1952 -3.1266 3.0524 14 6 1.7577 -3.7082 4.3510 15 6 0.6630 -3.7817 5.3841 16 1 -0.3343 -3.4474 5.1389 17 6 0.9343 -4.2767 6.6420 18 7 2.1497 -4.6796 6.9421 19 14 -0.4228 -4.3684 7.9224 20 1 -1.6877 -3.8515 7.3410 21 1 -0.6114 -5.7799 8.3435 22 1 -0.0479 -3.5462 9.1009 23 1 -0.3632 0.3625 0.9617 24 1 -0.3633 0.6516 -0.7946 25 1 -0.3633 -1.0140 -0.1668 26 1 3.0828 1.3432 -0.0709 27 1 1.5899 1.9164 -0.8524 28 1 1.7045 1.8723 0.9234 29 1 1.4481 -0.4975 2.0409 30 1 3.0528 -0.5370 1.2716 31 1 3.6167 -2.0295 -0.3542 32 1 2.2280 -2.7589 -1.2161 33 1 3.0911 -5.9936 -0.6059 34 1 3.2355 -4.9427 2.1554 35 1 1.6424 -4.9620 1.3379 36 1 0.3923 -3.7661 2.6857 37 1 0.8055 -2.1263 3.2412 38 1 2.5606 -3.0687 4.7177 39 1 2.1474 -4.7085 4.1623 40 1 2.8543 -4.6323 6.2772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085082661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:35 Heat of formation + Delta-G solvation = -75.808257 kcal Electronic energy + Delta-G solvation = -18230.714534 eV Core-core repulsion = 15464.894505 eV Total energy + Delta-G solvation = -2765.820029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73430 -38.17724 -37.15284 -35.66592 -33.13527 -30.86720 -29.77856 -28.51347 -26.85316 -25.88163 -23.49853 -22.93343 -21.71445 -20.93365 -18.92331 -18.59258 -17.08361 -16.64600 -16.34116 -15.86870 -15.71227 -15.63058 -15.08448 -14.80054 -14.59490 -14.57521 -13.85753 -13.79607 -13.37399 -13.35685 -12.78368 -12.69121 -12.64955 -12.56920 -12.33314 -12.09699 -11.95544 -11.84611 -11.69588 -11.59056 -10.97034 -10.74244 -10.57224 -9.62119 -9.33957 -8.73060 -6.43409 1.50032 1.59936 1.76313 2.50473 2.62493 3.12967 3.18986 3.36208 3.60817 3.72510 3.87210 4.09722 4.22478 4.23190 4.31444 4.36025 4.41034 4.43316 4.54135 4.64281 4.69690 4.78055 4.81407 4.89788 4.93291 4.95821 5.00799 5.02510 5.14892 5.21851 5.33624 5.76918 5.82384 6.00473 6.05522 6.09575 6.15106 6.53718 6.80555 7.38984 8.68284 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.005968 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.361201 B = 4690.420318 C = 5655.972682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.077 3.923 5 C 0.071 3.929 6 H 0.040 0.960 7 C -0.088 4.088 8 C 0.105 3.895 9 H 0.082 0.918 10 O -0.575 6.575 11 C 0.005 3.995 12 N -0.514 5.514 13 C 0.080 3.920 14 C 0.026 3.974 15 C -0.622 4.622 16 H 0.048 0.952 17 C -0.036 4.036 18 N -0.935 5.935 19 Si 1.123 2.877 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.019 0.981 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.021 0.979 29 H 0.020 0.980 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.394 0.606 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.018 0.982 37 H 0.058 0.942 38 H -0.009 1.009 39 H -0.011 1.011 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 7.020 -16.106 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.052 4.052 5 C -0.038 4.038 6 H 0.058 0.942 7 C -0.126 4.126 8 C 0.046 3.954 9 H 0.100 0.900 10 O -0.383 6.383 11 C -0.124 4.124 12 N -0.239 5.239 13 C -0.048 4.048 14 C -0.011 4.011 15 C -0.660 4.660 16 H 0.066 0.934 17 C -0.233 4.233 18 N -0.572 5.572 19 Si 0.944 3.056 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.038 0.962 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.244 0.756 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.009 0.991 39 H 0.007 0.993 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.103 7.130 -15.038 16.644 hybrid contribution -0.383 -0.233 -0.501 0.673 sum -0.280 6.897 -15.540 17.004 Atomic orbital electron populations 1.22467 0.87112 1.02424 1.00639 1.61912 1.08373 1.14729 1.42291 1.22459 1.01276 0.87597 1.00953 1.21910 1.00607 0.91894 0.90742 1.22558 0.97452 0.93843 0.89953 0.94163 1.22144 0.99485 0.93515 0.97467 1.22561 0.97954 0.89551 0.85348 0.90011 1.86485 1.84002 1.20778 1.47039 1.23836 0.99930 0.91479 0.97128 1.65246 1.38402 1.10661 1.09639 1.21964 0.91373 0.99196 0.92268 1.18996 0.95563 0.93876 0.92694 1.22468 0.97192 1.46373 0.99985 0.93411 1.27445 1.02152 0.92486 1.01258 1.70849 1.02336 1.46262 1.37789 0.82867 0.72071 0.77507 0.73152 1.19584 1.20177 1.20218 0.96246 0.89377 0.92212 0.90625 0.89654 0.96031 0.96212 0.89880 0.89023 0.90117 0.75601 0.90860 0.94162 0.96326 0.92347 0.99061 0.99282 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.41 127.69 1.20 1.68 16 2 N -0.55 -12.77 4.81 -948.84 -4.57 -17.34 16 3 C 0.02 0.46 9.51 127.69 1.21 1.67 16 4 C 0.08 2.16 4.57 86.30 0.39 2.56 16 5 C 0.07 2.15 2.34 45.06 0.11 2.26 16 6 H 0.04 1.32 6.72 -2.38 -0.02 1.30 16 7 C -0.09 -2.32 6.22 31.49 0.20 -2.12 16 8 C 0.11 2.77 4.42 31.49 0.14 2.91 16 9 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 10 O -0.58 -14.12 13.27 -148.98 -1.98 -16.10 16 11 C 0.00 0.17 5.68 86.45 0.49 0.66 16 12 N -0.51 -19.01 5.01 -856.66 -4.30 -23.31 16 13 C 0.08 3.55 4.72 86.30 0.41 3.96 16 14 C 0.03 1.42 4.41 29.85 0.13 1.55 16 15 C -0.62 -36.55 9.11 25.60 0.23 -36.32 16 16 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 17 C -0.04 -2.11 5.46 84.66 0.46 -1.65 16 18 N -0.94 -58.96 13.65 21.45 0.29 -58.66 16 19 Si 1.12 51.07 29.90 68.60 2.05 53.12 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H 0.02 0.45 7.98 -2.39 -0.02 0.43 16 24 H 0.09 1.50 8.03 -2.39 -0.02 1.49 16 25 H 0.06 1.39 6.95 -2.39 -0.02 1.37 16 26 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 27 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 28 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.02 0.64 6.95 -2.39 -0.02 0.62 16 30 H 0.08 2.27 7.75 -2.38 -0.02 2.25 16 31 H 0.09 2.18 7.75 -2.39 -0.02 2.16 16 32 H 0.08 2.12 7.98 -2.39 -0.02 2.10 16 33 H 0.39 6.49 9.11 -74.06 -0.67 5.81 16 34 H 0.07 2.55 7.87 -2.39 -0.02 2.54 16 35 H 0.04 1.41 7.68 -2.39 -0.02 1.40 16 36 H 0.02 0.84 7.75 -2.39 -0.02 0.82 16 37 H 0.06 2.59 7.10 -2.39 -0.02 2.57 16 38 H -0.01 -0.52 8.00 -2.39 -0.02 -0.54 16 39 H -0.01 -0.63 7.38 -2.39 -0.02 -0.65 16 40 H 0.26 16.42 7.22 -92.71 -0.67 15.75 16 Total: -1.00 -68.53 316.20 -3.09 -71.62 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.42 Total: 13.51 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.98 Total: -22.85 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -8.57 Total: -99.31 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.98 Total: -16.10 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -68.53 -3.09 -71.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.185 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds