Wall clock time and date at job start Mon Mar 30 2020 04:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00203 * 2 1 4 4 C 1.52995 * 109.47405 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47159 * 66.57054 * 4 3 2 6 6 C 1.46897 * 110.99846 * 57.69353 * 5 4 3 7 7 C 1.50696 * 109.47401 * 66.04442 * 6 5 4 8 8 H 1.07998 * 120.00091 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00458 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99451 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00320 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47039 * 90.00179 * 11 9 7 13 13 H 1.48499 * 109.46901 * 210.00418 * 11 9 7 14 14 H 1.48496 * 109.47206 * 329.99897 * 11 9 7 15 15 C 1.46902 * 111.00377 * 293.73715 * 5 4 3 16 16 H 1.09002 * 110.81360 * 68.90501 * 15 5 4 17 17 C 1.54887 * 110.75310 * 305.57411 * 15 5 4 18 18 C 1.54273 * 104.19444 * 203.74147 * 17 15 5 19 19 C 1.53872 * 106.59436 * 23.60726 * 18 17 15 20 20 H 1.09006 * 110.03377 * 240.71426 * 19 18 17 21 21 N 1.46902 * 110.07082 * 119.31286 * 19 18 17 22 22 C 1.54257 * 106.60313 * 0.02562 * 19 18 17 23 23 H 1.09001 * 109.47028 * 299.99553 * 1 2 3 24 24 H 1.08990 * 109.47488 * 60.00047 * 1 2 3 25 25 H 1.09007 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47151 * 60.00049 * 3 2 1 27 27 H 1.09004 * 109.46979 * 299.99842 * 3 2 1 28 28 H 1.09002 * 109.47246 * 306.57327 * 4 3 2 29 29 H 1.08998 * 109.47664 * 186.57537 * 4 3 2 30 30 H 1.09008 * 109.47087 * 186.04424 * 6 5 4 31 31 H 1.08997 * 109.47220 * 306.04416 * 6 5 4 32 32 H 0.97002 * 119.99542 * 179.97438 * 10 9 7 33 33 H 1.08998 * 110.49023 * 85.06368 * 17 15 5 34 34 H 1.09003 * 110.59868 * 322.46890 * 17 15 5 35 35 H 1.09004 * 110.02903 * 264.32660 * 18 17 15 36 36 H 1.08997 * 110.03329 * 142.89298 * 18 17 15 37 37 H 1.00894 * 111.00407 * 62.80616 * 21 19 18 38 38 H 1.00901 * 110.99767 * 186.76360 * 21 19 18 39 39 H 1.09000 * 110.49140 * 95.06638 * 22 19 18 40 40 H 1.09004 * 110.49173 * 217.70940 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9796 0.5972 -1.2718 6 6 3.5259 1.4048 -2.4119 7 6 4.2087 2.7478 -2.3796 8 1 4.9099 2.9783 -1.5912 9 6 3.9390 3.6821 -3.3571 10 7 3.0854 3.4012 -4.3174 11 14 4.7848 5.3471 -3.3166 12 1 6.0543 5.2762 -4.0838 13 1 3.8954 6.3690 -3.9246 14 1 5.0771 5.7198 -1.9092 15 6 3.5233 -0.7935 -1.3970 16 1 2.4411 -0.8365 -1.5200 17 6 3.9702 -1.6301 -0.1725 18 6 3.9866 -3.0825 -0.6923 19 6 4.1570 -3.0009 -2.2193 20 1 3.2999 -3.4562 -2.7156 21 7 5.3935 -3.6820 -2.6258 22 6 4.2389 -1.5019 -2.5742 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8496 0.5454 0.8244 29 1 3.9783 2.1736 0.1170 30 1 3.7747 0.8930 -3.3416 31 1 2.4466 1.5445 -2.3516 32 1 2.8954 4.0587 -5.0049 33 1 3.2548 -1.5249 0.6431 34 1 4.9662 -1.3305 0.1538 35 1 3.0467 -3.5773 -0.4474 36 1 4.8217 -3.6273 -0.2519 37 1 5.3560 -4.6647 -2.4001 38 1 5.5765 -3.5433 -3.6083 39 1 5.2787 -1.1811 -2.6379 40 1 3.7192 -1.3027 -3.5114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432839.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:55 Heat of formation + Delta-G solvation = -45.506265 kcal Electronic energy + Delta-G solvation = -18868.353323 eV Core-core repulsion = 16103.847287 eV Total energy + Delta-G solvation = -2764.506036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.89257 -37.23343 -35.28043 -32.61828 -31.54557 -29.25165 -27.58155 -26.82342 -25.86338 -24.46233 -22.83722 -20.87050 -19.27983 -18.71041 -16.32550 -16.13719 -16.01191 -15.53659 -15.00977 -14.78474 -14.72267 -14.25993 -13.65661 -13.36579 -12.89031 -12.38037 -12.19735 -11.67553 -11.35111 -11.17279 -11.14260 -11.11481 -10.75424 -10.69844 -10.56132 -10.44778 -10.22695 -10.16099 -10.05758 -9.58819 -9.17969 -8.91690 -8.47719 -8.37789 -7.00840 -5.99305 -3.99968 3.33501 3.39607 3.42795 4.23645 4.45397 4.71145 4.97416 5.12856 5.34230 5.38515 5.47848 5.54139 5.60808 5.82478 5.86393 5.88318 5.94089 5.97785 6.04034 6.15774 6.27232 6.34080 6.38672 6.50976 6.58576 6.64212 6.77568 6.80863 7.04075 7.42649 7.44095 7.48416 7.60749 7.61774 7.88167 8.20620 8.34244 8.67813 9.08845 9.64158 11.11226 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.007793 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.447162 B = 3592.013222 C = 4423.016699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.019 3.981 4 C 0.070 3.930 5 N -0.525 5.525 6 C 0.189 3.811 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.086 3.914 16 H 0.061 0.939 17 C -0.107 4.107 18 C -0.113 4.113 19 C 0.086 3.914 20 H 0.029 0.971 21 N -0.843 5.843 22 C -0.109 4.109 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.030 0.970 31 H -0.005 1.005 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.332 0.668 38 H 0.339 0.661 39 H 0.083 0.917 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 -10.460 6.781 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C -0.059 4.059 4 C -0.059 4.059 5 N -0.248 5.248 6 C 0.064 3.936 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.024 4.024 16 H 0.078 0.922 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.025 4.025 20 H 0.047 0.953 21 N -0.372 5.372 22 C -0.148 4.148 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.013 0.987 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.660 -10.052 7.126 12.433 hybrid contribution -1.439 0.687 -0.834 1.800 sum -3.099 -9.365 6.291 11.700 Atomic orbital electron populations 1.22643 0.82848 1.01678 0.99542 1.87979 1.18336 1.28682 1.95111 1.23511 0.97433 0.84374 1.00607 1.22138 0.89404 1.00982 0.93396 1.62333 1.58773 1.00744 1.02909 1.19776 0.93869 0.92024 0.87975 1.21214 1.24522 0.98140 1.10466 0.91977 1.24978 0.95419 0.98705 0.95520 1.69967 1.34809 1.35213 1.13933 0.86551 0.79349 0.83642 0.78175 1.20679 1.21464 1.19905 1.22564 0.97258 0.89039 0.93491 0.92153 1.22304 1.01156 0.93162 0.97887 1.22123 1.00471 0.98078 0.94518 1.21985 0.89455 0.95417 0.95675 0.95344 1.58889 1.37877 1.16381 1.24076 1.22441 1.02486 0.91863 0.97973 0.94881 0.94378 0.90508 0.94503 0.91346 0.91856 0.89097 0.95198 0.98706 0.93076 0.91829 0.91529 0.92775 0.91582 0.85609 0.84899 0.89812 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.61 6.61 -35.23 -0.23 -6.84 16 3 C 0.02 0.34 5.75 37.15 0.21 0.56 16 4 C 0.07 1.36 5.44 -3.83 -0.02 1.34 16 5 N -0.52 -11.40 4.59 -225.69 -1.04 -12.44 16 6 C 0.19 4.86 4.35 -4.98 -0.02 4.84 16 7 C -0.50 -14.02 8.55 -34.44 -0.29 -14.31 16 8 H 0.06 1.71 7.10 -52.49 -0.37 1.34 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 11 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 15 C 0.09 1.63 1.74 -65.71 -0.11 1.51 16 16 H 0.06 1.23 5.93 -51.93 -0.31 0.92 16 17 C -0.11 -1.76 4.76 -25.07 -0.12 -1.88 16 18 C -0.11 -1.62 6.59 -25.61 -0.17 -1.78 16 19 C 0.09 1.27 4.03 -66.60 -0.27 1.00 16 20 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 21 N -0.84 -10.90 9.10 -3.72 -0.03 -10.93 16 22 C -0.11 -1.99 5.21 -25.07 -0.13 -2.12 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.47 5.89 -51.93 -0.31 1.16 16 28 H 0.06 1.12 6.55 -51.93 -0.34 0.78 16 29 H 0.09 1.85 6.92 -51.93 -0.36 1.49 16 30 H 0.03 0.84 6.93 -51.92 -0.36 0.48 16 31 H 0.00 -0.13 5.80 -51.93 -0.30 -0.43 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.03 6.97 -51.93 -0.36 0.66 16 34 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.90 7.92 -51.93 -0.41 0.49 16 37 H 0.33 3.51 9.07 -39.30 -0.36 3.15 16 38 H 0.34 4.07 9.01 -39.29 -0.35 3.71 16 39 H 0.08 1.68 8.05 -51.93 -0.42 1.26 16 40 H 0.05 1.05 7.77 -51.93 -0.40 0.65 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -29.63 306.53 -7.62 -37.25 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.75 Total: 5.46 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.33 Total: -49.22 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.23 Total: -6.84 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.63 -7.62 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432839.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.257 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds