Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47001 * 2 1 4 4 C 1.47008 * 111.00143 * 293.63115 * 3 2 1 5 5 C 1.53098 * 109.26145 * 177.60991 * 4 3 2 6 6 O 1.43017 * 109.25751 * 56.84999 * 5 4 3 7 7 C 1.43019 * 113.73919 * 301.32972 * 6 5 4 8 8 H 1.08996 * 109.54295 * 298.71619 * 7 6 5 9 9 C 1.53001 * 109.50949 * 178.60348 * 7 6 5 10 10 N 1.46896 * 109.46674 * 62.38828 * 9 7 6 11 11 C 1.46905 * 111.00130 * 199.76098 * 10 9 7 12 12 C 1.46895 * 110.99886 * 75.80984 * 10 9 7 13 13 C 1.50707 * 109.47263 * 189.99590 * 12 10 9 14 14 H 1.07994 * 119.99629 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00197 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99920 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47063 * 269.99985 * 17 15 13 19 19 H 1.48500 * 109.47078 * 29.99682 * 17 15 13 20 20 H 1.48493 * 109.47471 * 149.99708 * 17 15 13 21 21 C 1.47019 * 110.99703 * 170.00104 * 3 2 1 22 22 H 1.09004 * 109.47528 * 300.00272 * 1 2 3 23 23 H 1.09001 * 109.47352 * 60.00325 * 1 2 3 24 24 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47003 * 239.99701 * 2 1 3 26 26 H 1.08997 * 109.46902 * 119.99839 * 2 1 3 27 27 H 1.09004 * 109.50634 * 297.54465 * 4 3 2 28 28 H 1.09004 * 109.50668 * 57.63132 * 4 3 2 29 29 H 1.08991 * 109.50955 * 176.78525 * 5 4 3 30 30 H 1.09005 * 109.50287 * 296.91709 * 5 4 3 31 31 H 1.09005 * 109.46781 * 302.39162 * 9 7 6 32 32 H 1.08994 * 109.47043 * 182.38815 * 9 7 6 33 33 H 1.08997 * 109.46777 * 291.02055 * 11 10 9 34 34 H 1.09001 * 109.46841 * 51.01316 * 11 10 9 35 35 H 1.08995 * 109.47049 * 171.01342 * 11 10 9 36 36 H 1.09000 * 109.47186 * 69.99726 * 12 10 9 37 37 H 1.09002 * 109.47338 * 309.99880 * 12 10 9 38 38 H 0.97005 * 120.00115 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.50744 * 62.45316 * 21 3 2 40 40 H 1.09000 * 109.50650 * 302.32421 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6765 2.0651 -1.2573 5 6 2.1515 3.5190 -1.1910 6 8 3.5570 3.5445 -0.9277 7 6 3.9267 2.8914 0.2898 8 1 3.4495 3.3927 1.1318 9 6 5.4465 2.9454 0.4575 10 7 5.8784 4.3458 0.5588 11 6 7.3091 4.4789 0.2532 12 6 5.5700 4.8972 1.8850 13 6 5.7974 6.3869 1.8750 14 1 6.1375 6.8751 0.9737 15 6 5.5723 7.1264 3.0167 16 7 5.1596 6.5316 4.1147 17 14 5.8536 8.9730 3.0041 18 1 7.2574 9.2626 3.3923 19 1 5.5975 9.5034 1.6409 20 1 4.9295 9.6211 3.9691 21 6 3.4696 1.4311 0.2383 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 2.1663 1.5598 -2.0898 28 1 0.5963 2.0407 -1.4014 29 1 1.9505 4.0114 -2.1424 30 1 1.6221 4.0387 -0.3924 31 1 5.9239 2.4794 -0.4045 32 1 5.7312 2.4109 1.3637 33 1 7.8949 4.0164 1.0475 34 1 7.5260 3.9839 -0.6935 35 1 7.5680 5.5351 0.1786 36 1 6.2181 4.4357 2.6301 37 1 4.5285 4.6903 2.1313 38 1 5.0009 7.0519 4.9179 39 1 3.9879 0.9157 -0.5702 40 1 3.6983 0.9446 1.1865 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092053187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -34.899906 kcal Electronic energy + Delta-G solvation = -18329.067020 eV Core-core repulsion = 15565.020910 eV Total energy + Delta-G solvation = -2764.046110 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49426 -36.64824 -35.60250 -32.59214 -31.54966 -30.81276 -27.80972 -27.14020 -25.30123 -23.78851 -23.07401 -21.48435 -20.21430 -19.79134 -16.42818 -16.26572 -15.98603 -15.26919 -14.98113 -14.72690 -14.54837 -13.93264 -13.80419 -13.55034 -13.30992 -12.93793 -12.13354 -12.03562 -11.96167 -11.78423 -11.56888 -11.41541 -11.14547 -10.95917 -10.86272 -10.74409 -10.62067 -10.39503 -10.02614 -9.70041 -9.15915 -9.09992 -8.37757 -8.33132 -7.10989 -5.96173 -3.96412 3.36294 3.42204 3.47620 3.77715 4.18419 4.48834 4.77203 4.95193 5.00983 5.15203 5.24632 5.34007 5.36979 5.40058 5.48710 5.53037 5.62772 5.69023 5.78868 5.82764 5.88533 5.98059 6.05671 6.07968 6.18529 6.26776 6.43271 6.50018 6.79994 6.98594 6.99830 7.34843 7.39159 7.68350 7.89352 8.17237 8.29374 8.63962 9.11376 9.67301 11.14954 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030018 B = 0.005377 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.558526 B = 5205.902767 C = 5471.517573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.537 5.537 4 C 0.017 3.983 5 C 0.061 3.939 6 O -0.358 6.358 7 C 0.103 3.897 8 H 0.073 0.927 9 C 0.065 3.935 10 N -0.532 5.532 11 C 0.043 3.957 12 C 0.191 3.809 13 C -0.502 4.502 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.273 1.273 20 H -0.287 1.287 21 C 0.025 3.975 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.011 0.989 34 H 0.043 0.957 35 H 0.071 0.929 36 H -0.011 1.011 37 H 0.030 0.970 38 H 0.260 0.740 39 H 0.039 0.961 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 -12.386 -8.958 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.262 5.262 4 C -0.111 4.111 5 C -0.016 4.016 6 O -0.276 6.276 7 C 0.044 3.956 8 H 0.091 0.909 9 C -0.065 4.065 10 N -0.256 5.256 11 C -0.106 4.106 12 C 0.066 3.934 13 C -0.541 4.541 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.103 4.103 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.007 0.993 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.673 -11.733 -8.858 16.145 hybrid contribution 0.691 -0.120 0.284 0.757 sum -5.982 -11.853 -8.574 15.805 Atomic orbital electron populations 1.21795 0.94876 1.01348 1.02599 1.22082 0.96126 0.88886 1.00642 1.62202 1.14014 1.15719 1.34281 1.22864 1.01264 0.96601 0.90366 1.22582 0.83557 0.93945 1.01535 1.88118 1.21417 1.77377 1.40709 1.22171 0.95756 0.89456 0.88181 0.90893 1.21960 0.92836 0.92094 0.99589 1.62008 1.15957 1.13887 1.33786 1.22173 0.88596 1.02192 0.97633 1.19803 0.96201 0.95065 0.82300 1.21173 1.44062 0.92127 0.96753 0.91875 1.24981 0.95525 0.98677 0.95487 1.69962 1.46858 1.35763 1.01485 0.86517 0.77817 0.85337 0.77875 1.20818 1.19753 1.21315 1.22813 0.87275 0.98861 1.01361 0.91669 0.92737 0.92436 0.95140 0.90752 0.94425 0.89917 0.88936 0.92405 0.91792 0.94222 0.97074 0.93833 0.91012 0.99335 0.95153 0.93032 0.94323 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.85 37.16 0.37 -1.00 16 2 C 0.05 0.55 5.68 -3.83 -0.02 0.52 16 3 N -0.54 -7.29 4.73 -234.30 -1.11 -8.40 16 4 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 5 C 0.06 0.91 7.01 37.21 0.26 1.18 16 6 O -0.36 -6.73 10.38 -35.23 -0.37 -7.09 16 7 C 0.10 1.87 2.88 -26.68 -0.08 1.79 16 8 H 0.07 1.53 6.73 -51.93 -0.35 1.18 16 9 C 0.06 1.22 4.68 -3.83 -0.02 1.20 16 10 N -0.53 -12.10 4.59 -244.37 -1.12 -13.23 16 11 C 0.04 0.87 9.31 60.07 0.56 1.43 16 12 C 0.19 5.13 4.55 -4.98 -0.02 5.11 16 13 C -0.50 -14.53 8.58 -34.44 -0.30 -14.83 16 14 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.03 0.37 4.93 -3.71 -0.02 0.35 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.48 6.52 -51.93 -0.34 0.15 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 26 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.89 6.38 -51.93 -0.33 0.56 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 32 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 33 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 34 H 0.04 0.76 7.85 -51.93 -0.41 0.35 16 35 H 0.07 1.53 7.01 -51.93 -0.36 1.17 16 36 H -0.01 -0.32 8.07 -51.93 -0.42 -0.73 16 37 H 0.03 0.87 6.60 -51.93 -0.34 0.52 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -31.51 313.69 -8.63 -40.14 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -7.09 Total: -4.13 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 0.62 Total: -2.59 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -1.49 Total: -48.14 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.37 Total: -7.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.51 -8.63 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092053187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.237 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds