Wall clock time and date at job start Mon Mar 30 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47001 * 2 1 4 4 C 1.47008 * 111.00143 * 293.63115 * 3 2 1 5 5 C 1.53098 * 109.26145 * 177.60991 * 4 3 2 6 6 O 1.43017 * 109.25751 * 56.84999 * 5 4 3 7 7 C 1.43019 * 113.73919 * 301.32972 * 6 5 4 8 8 H 1.08996 * 109.54295 * 298.71619 * 7 6 5 9 9 C 1.53001 * 109.50949 * 178.60348 * 7 6 5 10 10 N 1.46896 * 109.46674 * 62.38828 * 9 7 6 11 11 C 1.46905 * 111.00130 * 199.76098 * 10 9 7 12 12 C 1.46895 * 110.99886 * 75.80984 * 10 9 7 13 13 C 1.50707 * 109.47263 * 189.99590 * 12 10 9 14 14 H 1.07994 * 119.99629 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00197 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99920 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47063 * 269.99985 * 17 15 13 19 19 H 1.48500 * 109.47078 * 29.99682 * 17 15 13 20 20 H 1.48493 * 109.47471 * 149.99708 * 17 15 13 21 21 C 1.47019 * 110.99703 * 170.00104 * 3 2 1 22 22 H 1.09004 * 109.47528 * 300.00272 * 1 2 3 23 23 H 1.09001 * 109.47352 * 60.00325 * 1 2 3 24 24 H 1.08996 * 109.47455 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47003 * 239.99701 * 2 1 3 26 26 H 1.08997 * 109.46902 * 119.99839 * 2 1 3 27 27 H 1.09004 * 109.50634 * 297.54465 * 4 3 2 28 28 H 1.09004 * 109.50668 * 57.63132 * 4 3 2 29 29 H 1.08991 * 109.50955 * 176.78525 * 5 4 3 30 30 H 1.09005 * 109.50287 * 296.91709 * 5 4 3 31 31 H 1.09005 * 109.46781 * 302.39162 * 9 7 6 32 32 H 1.08994 * 109.47043 * 182.38815 * 9 7 6 33 33 H 1.08997 * 109.46777 * 291.02055 * 11 10 9 34 34 H 1.09001 * 109.46841 * 51.01316 * 11 10 9 35 35 H 1.08995 * 109.47049 * 171.01342 * 11 10 9 36 36 H 1.09000 * 109.47186 * 69.99726 * 12 10 9 37 37 H 1.09002 * 109.47338 * 309.99880 * 12 10 9 38 38 H 0.97005 * 120.00115 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.50744 * 62.45316 * 21 3 2 40 40 H 1.09000 * 109.50650 * 302.32421 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6765 2.0651 -1.2573 5 6 2.1515 3.5190 -1.1910 6 8 3.5570 3.5445 -0.9277 7 6 3.9267 2.8914 0.2898 8 1 3.4495 3.3927 1.1318 9 6 5.4465 2.9454 0.4575 10 7 5.8784 4.3458 0.5588 11 6 7.3091 4.4789 0.2532 12 6 5.5700 4.8972 1.8850 13 6 5.7974 6.3869 1.8750 14 1 6.1375 6.8751 0.9737 15 6 5.5723 7.1264 3.0167 16 7 5.1596 6.5316 4.1147 17 14 5.8536 8.9730 3.0041 18 1 7.2574 9.2626 3.3923 19 1 5.5975 9.5034 1.6409 20 1 4.9295 9.6211 3.9691 21 6 3.4696 1.4311 0.2383 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 2.1663 1.5598 -2.0898 28 1 0.5963 2.0407 -1.4014 29 1 1.9505 4.0114 -2.1424 30 1 1.6221 4.0387 -0.3924 31 1 5.9239 2.4794 -0.4045 32 1 5.7312 2.4109 1.3637 33 1 7.8949 4.0164 1.0475 34 1 7.5260 3.9839 -0.6935 35 1 7.5680 5.5351 0.1786 36 1 6.2181 4.4357 2.6301 37 1 4.5285 4.6903 2.1313 38 1 5.0009 7.0519 4.9179 39 1 3.9879 0.9157 -0.5702 40 1 3.6983 0.9446 1.1865 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092053187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:13 Heat of formation + Delta-G solvation = -58.356485 kcal Electronic energy + Delta-G solvation = -18330.084174 eV Core-core repulsion = 15565.020910 eV Total energy + Delta-G solvation = -2765.063264 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72959 -38.24817 -36.89742 -34.71443 -32.93108 -31.77201 -29.51593 -28.82635 -26.69518 -25.43222 -24.41877 -22.81072 -21.52864 -21.29460 -18.57266 -17.48194 -17.32651 -16.61469 -16.51774 -16.15049 -15.95068 -15.42340 -15.19691 -15.01417 -14.74105 -14.24555 -13.94906 -13.34104 -13.18782 -13.03282 -12.95652 -12.73917 -12.71897 -12.55655 -12.42975 -12.24490 -12.22032 -11.78209 -11.73552 -11.35796 -11.15276 -10.61009 -10.46686 -9.36480 -8.94954 -8.19319 -6.28927 1.40567 1.42541 1.54409 2.41243 2.73815 2.89339 3.13019 3.34993 3.92639 3.97437 3.98552 4.09671 4.21353 4.31222 4.36903 4.46348 4.55251 4.58270 4.59262 4.64657 4.67697 4.77029 4.80571 4.89886 5.02228 5.05525 5.08497 5.09335 5.18950 5.31192 5.34702 5.66211 5.95021 6.05654 6.07375 6.33249 6.38900 6.67858 6.87115 7.40543 8.91997 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030018 B = 0.005377 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.558526 B = 5205.902767 C = 5471.517573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.557 5.557 4 C 0.025 3.975 5 C 0.054 3.946 6 O -0.384 6.384 7 C 0.107 3.893 8 H 0.031 0.969 9 C 0.064 3.936 10 N -0.546 5.546 11 C 0.044 3.956 12 C 0.210 3.790 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.266 1.266 20 H -0.281 1.281 21 C 0.037 3.963 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.038 0.962 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.078 0.922 35 H 0.055 0.945 36 H -0.038 1.038 37 H 0.002 0.998 38 H 0.264 0.736 39 H 0.052 0.948 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -12.969 -10.403 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.282 5.282 4 C -0.103 4.103 5 C -0.023 4.023 6 O -0.302 6.302 7 C 0.048 3.952 8 H 0.049 0.951 9 C -0.064 4.064 10 N -0.270 5.270 11 C -0.104 4.104 12 C 0.084 3.916 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.191 1.191 20 H -0.206 1.206 21 C -0.092 4.092 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.097 0.903 35 H 0.074 0.926 36 H -0.021 1.021 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.861 -12.338 -10.321 17.488 hybrid contribution 0.715 0.022 0.705 1.005 sum -6.146 -12.316 -9.616 16.791 Atomic orbital electron populations 1.21774 0.93659 1.02554 1.02211 1.22168 0.97075 0.87203 1.01293 1.62199 1.13226 1.17749 1.35065 1.22804 1.02529 0.94696 0.90230 1.22806 0.81656 0.95984 1.01843 1.88052 1.23681 1.78030 1.40475 1.22006 0.94926 0.91468 0.86755 0.95134 1.22064 0.93662 0.89961 1.00750 1.61916 1.17647 1.16544 1.30888 1.22188 0.87120 1.01707 0.99347 1.19402 0.93805 0.94486 0.83887 1.21474 1.44425 0.93324 0.96910 0.92160 1.25909 0.94893 1.03914 0.94919 1.70089 1.47483 1.37832 1.02188 0.85388 0.78214 0.78914 0.78147 1.19584 1.19083 1.20649 1.22619 0.88358 0.96022 1.02215 0.92866 0.92278 0.90463 0.94064 0.90464 0.93591 0.87760 0.86752 0.94319 0.89182 0.93926 0.97025 0.90293 0.92568 1.02067 0.98011 0.92708 0.93002 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.85 71.98 0.71 -1.62 16 2 C 0.05 0.96 5.68 86.30 0.49 1.45 16 3 N -0.56 -14.40 4.73 -895.20 -4.23 -18.63 16 4 C 0.03 0.59 5.44 86.32 0.47 1.06 16 5 C 0.05 1.59 7.01 72.01 0.50 2.09 16 6 O -0.38 -14.40 10.38 -148.98 -1.55 -15.95 16 7 C 0.11 3.94 2.88 30.63 0.09 4.03 16 8 H 0.03 1.37 6.73 -2.39 -0.02 1.35 16 9 C 0.06 2.42 4.68 86.30 0.40 2.82 16 10 N -0.55 -25.16 4.59 -927.05 -4.26 -29.42 16 11 C 0.04 1.79 9.31 127.69 1.19 2.97 16 12 C 0.21 11.76 4.55 85.56 0.39 12.15 16 13 C -0.52 -30.98 8.58 25.60 0.22 -30.76 16 14 H 0.06 3.53 7.10 -2.91 -0.02 3.51 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 17 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 C 0.04 1.03 4.93 86.32 0.43 1.45 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 0.89 6.52 -2.39 -0.02 0.88 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.04 0.72 8.12 -2.39 -0.02 0.71 16 26 H 0.08 1.44 8.04 -2.39 -0.02 1.42 16 27 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.10 1.99 6.38 -2.39 -0.02 1.98 16 29 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.09 2.90 7.75 -2.38 -0.02 2.88 16 32 H 0.04 1.57 8.00 -2.39 -0.02 1.55 16 33 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 34 H 0.08 2.59 7.85 -2.39 -0.02 2.57 16 35 H 0.06 2.40 7.01 -2.39 -0.02 2.38 16 36 H -0.04 -2.29 8.07 -2.39 -0.02 -2.31 16 37 H 0.00 0.11 6.60 -2.39 -0.02 0.10 16 38 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 Total: -1.00 -68.93 313.69 -1.39 -70.33 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.98 Total: 7.39 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.35 Total: -3.81 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -8.20 Total: -105.60 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -1.55 Total: -15.95 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -68.93 -1.39 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092053187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.970 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds