Wall clock time and date at job start Mon Mar 30 2020 03:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46797 * 2 1 4 4 C 1.46897 * 111.00545 * 300.40516 * 3 2 1 5 5 C 1.50700 * 109.47085 * 293.95566 * 4 3 2 6 6 H 1.08001 * 120.00136 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99864 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47215 * 90.00137 * 9 7 5 11 11 H 1.48507 * 109.46875 * 210.00154 * 9 7 5 12 12 H 1.48500 * 109.47440 * 330.00083 * 9 7 5 13 13 C 1.46908 * 110.99660 * 64.36200 * 3 2 1 14 14 C 1.52997 * 109.47224 * 75.65850 * 13 3 2 15 15 H 1.09005 * 109.50502 * 301.70029 * 14 13 3 16 16 C 1.53099 * 109.50517 * 181.57730 * 14 13 3 17 17 N 1.47011 * 109.25631 * 183.21162 * 16 14 13 18 18 C 1.46900 * 111.00220 * 182.39018 * 17 16 14 19 19 C 1.47017 * 110.75334 * 58.61269 * 17 16 14 20 20 C 1.53091 * 109.25832 * 301.38175 * 19 17 16 21 21 O 1.43012 * 109.51190 * 61.78588 * 14 13 3 22 22 H 1.08990 * 109.47801 * 59.95373 * 1 2 3 23 23 H 1.09004 * 109.47000 * 299.95096 * 1 2 3 24 24 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47723 * 119.99877 * 2 1 3 26 26 H 1.08995 * 109.47446 * 240.00905 * 2 1 3 27 27 H 1.09000 * 109.46818 * 53.95441 * 4 3 2 28 28 H 1.08997 * 109.47360 * 173.94811 * 4 3 2 29 29 H 0.96996 * 120.00000 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46552 * 195.65510 * 13 3 2 31 31 H 1.08997 * 109.46934 * 315.65044 * 13 3 2 32 32 H 1.08996 * 109.50633 * 303.14164 * 16 14 13 33 33 H 1.08997 * 109.51145 * 63.27692 * 16 14 13 34 34 H 1.09007 * 109.47107 * 300.32019 * 18 17 16 35 35 H 1.09000 * 109.47061 * 60.31578 * 18 17 16 36 36 H 1.08994 * 109.47662 * 180.32016 * 18 17 16 37 37 H 1.09002 * 109.50344 * 181.45044 * 19 17 16 38 38 H 1.08998 * 109.50428 * 61.32259 * 19 17 16 39 39 H 1.08998 * 109.50797 * 296.91554 * 20 19 17 40 40 H 1.09006 * 109.54240 * 176.80142 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5407 2.1128 -1.1828 5 6 2.1546 1.5156 -2.4227 6 1 2.8330 0.6793 -2.3403 7 6 1.8501 2.0368 -3.6623 8 7 2.3863 1.5159 -4.7444 9 14 0.6762 3.4828 -3.8048 10 1 1.4436 4.7522 -3.7349 11 1 -0.0434 3.4101 -5.1019 12 1 -0.3050 3.4355 -2.6912 13 6 1.6355 2.0791 1.2365 14 6 2.5266 1.6041 2.3859 15 1 2.4281 0.5246 2.5006 16 6 2.1013 2.2978 3.6828 17 7 3.0090 1.8966 4.7674 18 6 2.6010 2.4970 6.0445 19 6 4.3987 2.2475 4.4403 20 6 4.8009 1.5543 3.1359 21 8 3.8892 1.9316 2.1006 22 1 -0.3634 0.5145 -0.8894 23 1 -0.3633 0.5131 0.8905 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 0.4550 2.0359 -1.2417 28 1 1.8269 3.1616 -1.1046 29 1 2.1718 1.8823 -5.6165 30 1 1.7574 3.1540 1.1026 31 1 0.5938 1.8577 1.4688 32 1 2.1485 3.3785 3.5498 33 1 1.0819 2.0055 3.9345 34 1 2.6137 3.5834 5.9557 35 1 1.5940 2.1648 6.2969 36 1 3.2925 2.1885 6.8284 37 1 5.0561 1.9185 5.2450 38 1 4.4825 3.3275 4.3195 39 1 4.7687 0.4735 3.2731 40 1 5.8111 1.8562 2.8591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092056250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:51 Heat of formation + Delta-G solvation = -26.488181 kcal Electronic energy + Delta-G solvation = -18500.511778 eV Core-core repulsion = 15736.830427 eV Total energy + Delta-G solvation = -2763.681350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.59979 -37.25129 -35.47755 -32.62802 -31.75916 -29.55141 -28.96059 -27.59504 -25.13600 -24.04849 -23.22016 -21.76485 -20.25421 -19.10258 -16.70135 -16.34095 -16.13161 -15.47610 -14.96853 -14.85597 -14.76180 -14.29640 -13.89818 -13.63162 -13.07777 -12.74129 -12.44181 -12.39754 -12.07847 -11.97173 -11.62375 -11.41298 -11.27419 -11.18251 -10.79936 -10.60887 -10.50214 -10.31246 -9.87299 -9.69115 -9.35531 -9.17735 -8.52747 -8.49969 -7.18910 -5.98412 -3.94325 3.32236 3.39267 3.40687 3.69089 4.02149 4.47269 4.65291 4.90669 4.94678 5.13202 5.18161 5.22502 5.33544 5.35658 5.41515 5.50810 5.61819 5.64232 5.67743 5.75606 5.83123 5.85711 5.97587 6.02889 6.13491 6.31162 6.41994 6.57753 6.79615 6.80011 6.86488 7.02777 7.13434 7.51633 7.69457 7.99761 8.16921 8.74687 9.11779 9.63841 11.15030 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034290 B = 0.005568 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.365188 B = 5027.323958 C = 5118.434332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 N -0.514 5.514 4 C 0.159 3.841 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.054 3.946 14 C 0.104 3.896 15 H 0.064 0.936 16 C 0.022 3.978 17 N -0.543 5.543 18 C 0.025 3.975 19 C 0.017 3.983 20 C 0.061 3.939 21 O -0.354 6.354 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.086 0.914 27 H -0.006 1.006 28 H 0.021 0.979 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 1.055 19.583 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.237 5.237 4 C 0.033 3.967 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.075 4.075 14 C 0.045 3.955 15 H 0.082 0.918 16 C -0.106 4.106 17 N -0.268 5.268 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.017 4.017 21 O -0.272 6.272 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.012 0.988 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.255 0.652 19.226 19.238 hybrid contribution -1.538 1.652 0.116 2.260 sum -1.793 2.304 19.342 19.561 Atomic orbital electron populations 1.22410 0.99635 1.01229 1.01632 1.22033 0.91790 0.91227 1.01845 1.62056 1.59079 1.01647 1.00879 1.20249 0.93665 0.93930 0.88891 1.21033 1.27225 1.17420 0.88320 0.90136 1.24884 0.95970 0.96716 0.95797 1.69897 1.44399 1.41927 0.97982 0.86902 0.81843 0.83764 0.77463 1.20225 1.21322 1.19355 1.22109 0.95071 0.99408 0.90916 1.22159 0.82921 0.98470 0.91964 0.91806 1.22838 0.97047 0.98763 0.91970 1.62198 1.02536 1.59124 1.02900 1.22371 1.01637 0.96911 0.91383 1.22849 0.90008 0.99019 0.99277 1.22605 0.93955 0.98739 0.86388 1.88221 1.15829 1.82115 1.41006 0.91453 0.93827 0.93091 0.92843 0.89532 0.98839 0.96075 0.92791 0.91047 0.93586 0.93926 0.89943 0.95648 0.91293 0.91375 0.90044 0.94079 0.92676 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 9.28 37.16 0.34 -2.96 16 2 C 0.06 1.15 5.76 -3.82 -0.02 1.13 16 3 N -0.51 -11.01 4.53 -236.07 -1.07 -12.08 16 4 C 0.16 3.91 3.52 -4.98 -0.02 3.89 16 5 C -0.50 -14.45 9.07 -34.44 -0.31 -14.76 16 6 H 0.08 2.54 7.35 -52.49 -0.39 2.15 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 9 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.05 0.95 4.56 -3.82 -0.02 0.93 16 14 C 0.10 1.62 2.87 -26.68 -0.08 1.54 16 15 H 0.06 1.02 6.81 -51.93 -0.35 0.67 16 16 C 0.02 0.29 4.95 -3.71 -0.02 0.27 16 17 N -0.54 -6.44 4.99 -242.60 -1.21 -7.64 16 18 C 0.03 0.23 9.61 60.06 0.58 0.81 16 19 C 0.02 0.19 5.66 -3.71 -0.02 0.17 16 20 C 0.06 0.80 7.01 37.20 0.26 1.06 16 21 O -0.35 -6.15 10.37 -35.23 -0.37 -6.52 16 22 H 0.07 1.33 6.27 -51.93 -0.33 1.00 16 23 H 0.04 0.68 6.23 -51.93 -0.32 0.35 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.92 6.72 -51.93 -0.35 0.58 16 26 H 0.09 1.89 6.87 -51.93 -0.36 1.54 16 27 H -0.01 -0.14 5.04 -51.93 -0.26 -0.41 16 28 H 0.02 0.53 7.26 -51.93 -0.38 0.16 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.07 1.28 7.74 -51.92 -0.40 0.88 16 31 H 0.05 0.73 5.85 -51.93 -0.30 0.43 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -31.75 305.67 -8.17 -39.92 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.83 Total: -2.12 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.60 Total: -6.05 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -1.51 Total: -46.96 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.37 Total: -6.52 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.75 -8.17 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092056250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.430 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds