Wall clock time and date at job start Mon Mar 30 2020 03:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46797 * 2 1 4 4 C 1.46897 * 111.00545 * 300.40516 * 3 2 1 5 5 C 1.50700 * 109.47085 * 293.95566 * 4 3 2 6 6 H 1.08001 * 120.00136 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99864 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47215 * 90.00137 * 9 7 5 11 11 H 1.48507 * 109.46875 * 210.00154 * 9 7 5 12 12 H 1.48500 * 109.47440 * 330.00083 * 9 7 5 13 13 C 1.46908 * 110.99660 * 64.36200 * 3 2 1 14 14 C 1.52997 * 109.47224 * 75.65850 * 13 3 2 15 15 H 1.09005 * 109.50502 * 301.70029 * 14 13 3 16 16 C 1.53099 * 109.50517 * 181.57730 * 14 13 3 17 17 N 1.47011 * 109.25631 * 183.21162 * 16 14 13 18 18 C 1.46900 * 111.00220 * 182.39018 * 17 16 14 19 19 C 1.47017 * 110.75334 * 58.61269 * 17 16 14 20 20 C 1.53091 * 109.25832 * 301.38175 * 19 17 16 21 21 O 1.43012 * 109.51190 * 61.78588 * 14 13 3 22 22 H 1.08990 * 109.47801 * 59.95373 * 1 2 3 23 23 H 1.09004 * 109.47000 * 299.95096 * 1 2 3 24 24 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47723 * 119.99877 * 2 1 3 26 26 H 1.08995 * 109.47446 * 240.00905 * 2 1 3 27 27 H 1.09000 * 109.46818 * 53.95441 * 4 3 2 28 28 H 1.08997 * 109.47360 * 173.94811 * 4 3 2 29 29 H 0.96996 * 120.00000 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46552 * 195.65510 * 13 3 2 31 31 H 1.08997 * 109.46934 * 315.65044 * 13 3 2 32 32 H 1.08996 * 109.50633 * 303.14164 * 16 14 13 33 33 H 1.08997 * 109.51145 * 63.27692 * 16 14 13 34 34 H 1.09007 * 109.47107 * 300.32019 * 18 17 16 35 35 H 1.09000 * 109.47061 * 60.31578 * 18 17 16 36 36 H 1.08994 * 109.47662 * 180.32016 * 18 17 16 37 37 H 1.09002 * 109.50344 * 181.45044 * 19 17 16 38 38 H 1.08998 * 109.50428 * 61.32259 * 19 17 16 39 39 H 1.08998 * 109.50797 * 296.91554 * 20 19 17 40 40 H 1.09006 * 109.54240 * 176.80142 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5407 2.1128 -1.1828 5 6 2.1546 1.5156 -2.4227 6 1 2.8330 0.6793 -2.3403 7 6 1.8501 2.0368 -3.6623 8 7 2.3863 1.5159 -4.7444 9 14 0.6762 3.4828 -3.8048 10 1 1.4436 4.7522 -3.7349 11 1 -0.0434 3.4101 -5.1019 12 1 -0.3050 3.4355 -2.6912 13 6 1.6355 2.0791 1.2365 14 6 2.5266 1.6041 2.3859 15 1 2.4281 0.5246 2.5006 16 6 2.1013 2.2978 3.6828 17 7 3.0090 1.8966 4.7674 18 6 2.6010 2.4970 6.0445 19 6 4.3987 2.2475 4.4403 20 6 4.8009 1.5543 3.1359 21 8 3.8892 1.9316 2.1006 22 1 -0.3634 0.5145 -0.8894 23 1 -0.3633 0.5131 0.8905 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 0.4550 2.0359 -1.2417 28 1 1.8269 3.1616 -1.1046 29 1 2.1718 1.8823 -5.6165 30 1 1.7574 3.1540 1.1026 31 1 0.5938 1.8577 1.4688 32 1 2.1485 3.3785 3.5498 33 1 1.0819 2.0055 3.9345 34 1 2.6137 3.5834 5.9557 35 1 1.5940 2.1648 6.2969 36 1 3.2925 2.1885 6.8284 37 1 5.0561 1.9185 5.2450 38 1 4.4825 3.3275 4.3195 39 1 4.7687 0.4735 3.2731 40 1 5.8111 1.8562 2.8591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092056250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:50 Heat of formation + Delta-G solvation = -51.297903 kcal Electronic energy + Delta-G solvation = -18501.587608 eV Core-core repulsion = 15736.830427 eV Total energy + Delta-G solvation = -2764.757181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71222 -38.78557 -36.52728 -34.73247 -33.05834 -31.22476 -30.06447 -29.10696 -26.50195 -24.99418 -24.87189 -23.23225 -21.34308 -20.72066 -18.86987 -17.57615 -17.17380 -16.74596 -16.43456 -16.15852 -15.94958 -15.78587 -15.39472 -14.68996 -14.62207 -14.43132 -14.02334 -13.35556 -13.28502 -13.21368 -12.97249 -12.81990 -12.65480 -12.54455 -12.38100 -12.19380 -11.97121 -11.82388 -11.62844 -11.43172 -11.12097 -10.74434 -10.47936 -9.41357 -8.83640 -8.24968 -6.26998 1.35003 1.36409 1.46824 2.36245 2.77044 2.92217 3.08427 3.30121 3.94610 4.00060 4.04507 4.07428 4.25587 4.28081 4.36096 4.46440 4.53991 4.56512 4.61657 4.66062 4.68155 4.69984 4.79230 4.83357 4.93199 4.99305 5.04040 5.06634 5.10229 5.31129 5.45997 5.59346 5.89756 5.98504 6.04672 6.36032 6.50911 6.73861 6.79292 7.35904 8.92107 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034290 B = 0.005568 C = 0.005469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.365188 B = 5027.323958 C = 5118.434332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.061 3.939 3 N -0.537 5.537 4 C 0.171 3.829 5 C -0.509 4.509 6 H 0.034 0.966 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.248 1.248 13 C 0.056 3.944 14 C 0.107 3.893 15 H 0.059 0.941 16 C 0.031 3.969 17 N -0.553 5.553 18 C 0.025 3.975 19 C 0.022 3.978 20 C 0.054 3.946 21 O -0.392 6.392 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.002 0.998 28 H 0.018 0.982 29 H 0.266 0.734 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.027 0.973 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.037 0.963 39 H 0.054 0.946 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 2.098 22.164 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.067 4.067 3 N -0.260 5.260 4 C 0.044 3.956 5 C -0.547 4.547 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.172 1.172 13 C -0.073 4.073 14 C 0.049 3.951 15 H 0.077 0.923 16 C -0.098 4.098 17 N -0.278 5.278 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.022 4.022 21 O -0.311 6.311 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.019 0.981 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.750 1.687 21.850 21.984 hybrid contribution -0.952 1.220 -0.644 1.675 sum -2.701 2.906 21.206 21.574 Atomic orbital electron populations 1.22299 0.97553 1.02664 1.01432 1.21962 0.93506 0.90133 1.01051 1.61909 1.60170 1.02493 1.01430 1.19972 0.93525 0.93546 0.88572 1.21250 1.26500 1.16274 0.90680 0.94789 1.25827 0.97980 1.00007 0.95179 1.70060 1.46409 1.43993 0.98748 0.85741 0.79658 0.79503 0.78196 1.19380 1.20705 1.17180 1.22183 0.96822 0.98618 0.89635 1.22094 0.82171 0.98364 0.92500 0.92287 1.22707 0.98099 0.98048 0.90963 1.62216 1.02459 1.59664 1.03508 1.22443 1.02618 0.96931 0.90236 1.22811 0.90434 0.98493 0.98861 1.22800 0.93795 0.98984 0.86660 1.88158 1.17040 1.82618 1.43282 0.94072 0.91335 0.90951 0.90578 0.93384 0.98084 0.96393 0.92557 0.91716 0.91359 0.94375 0.88164 0.95479 0.90306 0.89912 0.87626 0.94508 0.92753 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.97 9.28 71.98 0.67 -5.30 16 2 C 0.06 2.38 5.76 86.30 0.50 2.88 16 3 N -0.54 -23.01 4.53 -900.79 -4.08 -27.09 16 4 C 0.17 8.41 3.52 85.56 0.30 8.72 16 5 C -0.51 -30.34 9.07 25.60 0.23 -30.11 16 6 H 0.03 2.28 7.35 -2.91 -0.02 2.26 16 7 C 0.01 0.40 5.47 84.65 0.46 0.86 16 8 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 9 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 13 C 0.06 1.87 4.56 86.30 0.39 2.27 16 14 C 0.11 3.19 2.87 30.63 0.09 3.27 16 15 H 0.06 1.79 6.81 -2.38 -0.02 1.77 16 16 C 0.03 0.71 4.95 86.32 0.43 1.13 16 17 N -0.55 -11.57 4.99 -921.45 -4.59 -16.16 16 18 C 0.03 0.38 9.61 127.69 1.23 1.60 16 19 C 0.02 0.45 5.66 86.31 0.49 0.94 16 20 C 0.05 1.37 7.01 72.01 0.50 1.88 16 21 O -0.39 -13.44 10.37 -148.98 -1.54 -14.99 16 22 H 0.04 1.57 6.27 -2.39 -0.01 1.55 16 23 H 0.07 1.91 6.23 -2.38 -0.01 1.89 16 24 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.08 2.57 6.72 -2.39 -0.02 2.56 16 26 H 0.05 2.20 6.87 -2.39 -0.02 2.19 16 27 H 0.00 0.08 5.04 -2.39 -0.01 0.07 16 28 H 0.02 0.89 7.26 -2.39 -0.02 0.88 16 29 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.06 2.24 7.74 -2.38 -0.02 2.22 16 31 H 0.07 1.97 5.85 -2.39 -0.01 1.95 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.11 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -70.62 305.67 -1.81 -72.43 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.94 Total: 11.38 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 5.29 Total: -11.85 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -8.38 Total: -103.84 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -1.54 Total: -14.99 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -70.62 -1.81 -72.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092056250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.132 kcal (2) G-P(sol) polarization free energy of solvation -70.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds