Wall clock time and date at job start Mon Mar 30 2020 04:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00147 * 2 1 4 4 H 1.08998 * 109.50003 * 35.06493 * 3 2 1 5 5 C 1.53040 * 109.49803 * 155.16222 * 3 2 1 6 6 C 1.53039 * 109.53795 * 181.31634 * 5 3 2 7 7 H 1.09004 * 109.52406 * 58.59939 * 6 5 3 8 8 C 1.53003 * 109.49677 * 178.68006 * 6 5 3 9 9 C 1.53005 * 109.46890 * 184.83616 * 8 6 5 10 10 C 1.53003 * 109.46890 * 179.97438 * 9 8 6 11 11 O 1.42894 * 109.46795 * 180.02562 * 10 9 8 12 12 C 1.53191 * 109.31528 * 298.63226 * 6 5 3 13 13 N 1.46934 * 108.77339 * 54.63407 * 12 6 5 14 14 C 1.36935 * 120.63151 * 126.41668 * 13 12 6 15 15 H 1.07999 * 119.99769 * 331.81220 * 14 13 12 16 16 C 1.38809 * 120.00114 * 151.81287 * 14 13 12 17 17 N 1.31618 * 119.99718 * 343.07301 * 16 14 13 18 18 Si 1.86797 * 120.00156 * 163.07538 * 16 14 13 19 19 H 1.48502 * 109.47007 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47371 * 119.99584 * 18 16 14 21 21 H 1.48496 * 109.47404 * 239.99976 * 18 16 14 22 22 C 1.46932 * 118.73889 * 306.39294 * 13 12 6 23 23 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47077 * 300.00521 * 1 2 3 25 25 H 1.09003 * 109.46687 * 59.99912 * 1 2 3 26 26 H 1.00905 * 111.00044 * 123.95497 * 2 1 3 27 27 H 1.09005 * 109.45895 * 301.33437 * 5 3 2 28 28 H 1.08999 * 109.46261 * 61.29107 * 5 3 2 29 29 H 1.08995 * 109.47511 * 304.83414 * 8 6 5 30 30 H 1.09003 * 109.46946 * 64.84284 * 8 6 5 31 31 H 1.08992 * 109.47327 * 300.00403 * 9 8 6 32 32 H 1.09003 * 109.46780 * 60.00566 * 9 8 6 33 33 H 1.08998 * 109.47039 * 300.00395 * 10 9 8 34 34 H 1.08998 * 109.46713 * 60.00239 * 10 9 8 35 35 H 0.96706 * 114.00072 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.58528 * 294.85201 * 12 6 5 37 37 H 1.08996 * 109.70753 * 174.48774 * 12 6 5 38 38 H 0.97006 * 120.00032 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.58391 * 293.82433 * 22 13 12 40 40 H 1.08995 * 109.58683 * 173.39328 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3408 2.0125 0.5903 5 6 3.4008 1.3791 0.6060 6 6 3.9371 2.8121 0.6365 7 1 3.2649 3.4403 1.2211 8 6 5.3286 2.8230 1.2726 9 6 5.8138 4.2673 1.4130 10 6 7.2051 4.2783 2.0497 11 8 7.6579 5.6272 2.1814 12 6 4.0250 3.3509 -0.7948 13 7 2.7091 3.2126 -1.4337 14 6 2.0983 4.2921 -2.0139 15 1 2.3012 5.2881 -1.6489 16 6 1.2183 4.1063 -3.0712 17 7 1.2155 2.9685 -3.7329 18 14 0.0381 5.4710 -3.5550 19 1 0.2400 6.6399 -2.6616 20 1 0.2960 5.8732 -4.9611 21 1 -1.3594 4.9854 -3.4274 22 6 2.0612 1.8938 -1.4386 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8306 -0.5262 0.7814 27 1 3.3605 0.9847 1.6214 28 1 4.0605 0.7572 0.0010 29 1 5.2817 2.3582 2.2574 30 1 6.0213 2.2669 0.6408 31 1 5.8607 4.7322 0.4284 32 1 5.1212 4.8234 2.0448 33 1 7.1577 3.8135 3.0344 34 1 7.8979 3.7220 1.4183 35 1 8.5354 5.7105 2.5791 36 1 4.7651 2.7799 -1.3554 37 1 4.3127 4.4020 -0.7748 38 1 0.6002 2.8385 -4.4715 39 1 2.6413 1.2041 -2.0517 40 1 1.0523 1.9838 -1.8411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:46 Heat of formation + Delta-G solvation = -45.396498 kcal Electronic energy + Delta-G solvation = -18372.240096 eV Core-core repulsion = 15607.738819 eV Total energy + Delta-G solvation = -2764.501277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.44498 -37.05520 -35.08450 -34.11046 -31.73921 -30.03781 -28.73355 -25.33834 -25.21682 -24.26927 -21.81093 -21.50929 -19.87462 -19.06861 -17.30926 -16.67308 -15.62770 -15.06524 -14.92518 -14.38066 -14.14884 -13.99093 -13.61668 -13.31021 -12.63232 -12.54323 -12.44391 -12.15914 -11.92404 -11.40934 -11.21167 -11.00161 -10.91823 -10.83880 -10.53033 -10.41090 -10.26766 -10.10100 -9.98523 -9.81862 -9.55722 -9.31775 -8.40396 -7.90923 -6.59578 -5.72609 -3.16202 3.39665 3.47637 3.50126 4.17824 4.51035 4.71915 5.04019 5.14886 5.32887 5.36347 5.43772 5.50572 5.59215 5.69694 5.73313 5.84193 5.86231 5.95868 6.02377 6.12706 6.21773 6.32493 6.34040 6.43587 6.47066 6.55976 6.61129 6.88059 6.91382 7.08905 7.34671 7.55470 7.56905 7.84521 7.85311 7.97041 8.51602 9.27656 9.91055 10.47843 11.34853 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.007466 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.783326 B = 3749.315282 C = 5109.473521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.687 5.687 3 C 0.060 3.940 4 H 0.035 0.965 5 C -0.103 4.103 6 C -0.101 4.101 7 H 0.066 0.934 8 C -0.105 4.105 9 C -0.122 4.122 10 C 0.076 3.924 11 O -0.576 6.576 12 C 0.151 3.849 13 N -0.593 5.593 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.187 3.813 23 H 0.057 0.943 24 H 0.013 0.987 25 H 0.070 0.930 26 H 0.327 0.673 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.375 0.625 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.025 0.975 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.167 -2.969 11.736 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.317 5.317 3 C -0.050 4.050 4 H 0.053 0.947 5 C -0.141 4.141 6 C -0.122 4.122 7 H 0.084 0.916 8 C -0.144 4.144 9 C -0.159 4.159 10 C -0.002 4.002 11 O -0.381 6.381 12 C 0.024 3.976 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.542 5.542 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.060 3.940 23 H 0.076 0.924 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.143 0.857 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.221 0.779 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.509 -2.945 10.603 12.785 hybrid contribution -0.334 0.698 0.919 1.202 sum 6.175 -2.247 11.522 13.264 Atomic orbital electron populations 1.22181 0.88399 1.00647 1.00549 1.60413 1.07309 1.15321 1.48706 1.22414 0.93797 0.87339 1.01478 0.94733 1.21606 0.97026 0.96796 0.98706 1.21648 0.94693 0.96411 0.99450 0.91588 1.21482 0.97411 0.95250 1.00213 1.21583 0.94369 0.97870 1.02104 1.22271 0.96444 0.82714 0.98775 1.86523 1.38332 1.27561 1.85638 1.20988 0.88483 0.98287 0.89795 1.44058 1.15401 1.07013 1.65032 1.19213 1.21832 0.87273 1.09959 0.91707 1.25048 1.01691 0.97080 0.95756 1.70068 1.38158 1.24867 1.21153 0.86277 0.81136 0.81705 0.78016 1.20265 1.21694 1.21613 1.20673 0.99667 0.84683 0.88927 0.92379 0.96861 0.91149 0.85655 0.93967 0.91851 0.92641 0.91977 0.90539 0.91466 0.94111 0.93788 0.77942 0.96490 0.92711 0.93735 0.95710 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.50 60.06 0.63 1.15 16 2 N -0.69 -12.00 6.66 -113.88 -0.76 -12.76 16 3 C 0.06 1.20 2.64 -67.59 -0.18 1.02 16 4 H 0.03 0.73 7.80 -51.93 -0.41 0.33 16 5 C -0.10 -1.76 4.45 -26.69 -0.12 -1.88 16 6 C -0.10 -1.75 2.34 -90.50 -0.21 -1.96 16 7 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 8 C -0.11 -1.43 4.69 -26.73 -0.13 -1.56 16 9 C -0.12 -1.66 5.34 -26.73 -0.14 -1.81 16 10 C 0.08 0.85 7.05 37.16 0.26 1.12 16 11 O -0.58 -6.88 13.66 -35.23 -0.48 -7.37 16 12 C 0.15 3.21 5.40 -3.71 -0.02 3.19 16 13 N -0.59 -15.18 2.99 -172.31 -0.52 -15.70 16 14 C -0.25 -7.10 9.58 -15.06 -0.14 -7.24 16 15 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.63 11.20 55.49 0.62 -26.01 16 18 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.19 4.62 4.77 -3.71 -0.02 4.60 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.01 0.20 8.06 -51.93 -0.42 -0.22 16 25 H 0.07 1.30 7.56 -51.93 -0.39 0.90 16 26 H 0.33 4.83 8.42 -39.29 -0.33 4.50 16 27 H 0.04 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.17 6.70 -51.93 -0.35 0.82 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.37 2.53 9.12 45.56 0.42 2.95 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 1.16 6.65 -51.93 -0.35 0.81 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 2.34 5.53 -51.93 -0.29 2.06 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -31.44 312.66 -7.91 -39.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.31 Total: 4.10 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.15 Total: -3.37 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.65 Total: -54.47 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.48 Total: -7.37 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.44 -7.91 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.043 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds