Wall clock time and date at job start Mon Mar 30 2020 04:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00147 * 2 1 4 4 H 1.08998 * 109.50003 * 35.06493 * 3 2 1 5 5 C 1.53040 * 109.49803 * 155.16222 * 3 2 1 6 6 C 1.53039 * 109.53795 * 181.31634 * 5 3 2 7 7 H 1.09004 * 109.52406 * 58.59939 * 6 5 3 8 8 C 1.53003 * 109.49677 * 178.68006 * 6 5 3 9 9 C 1.53005 * 109.46890 * 184.83616 * 8 6 5 10 10 C 1.53003 * 109.46890 * 179.97438 * 9 8 6 11 11 O 1.42894 * 109.46795 * 180.02562 * 10 9 8 12 12 C 1.53191 * 109.31528 * 298.63226 * 6 5 3 13 13 N 1.46934 * 108.77339 * 54.63407 * 12 6 5 14 14 C 1.36935 * 120.63151 * 126.41668 * 13 12 6 15 15 H 1.07999 * 119.99769 * 331.81220 * 14 13 12 16 16 C 1.38809 * 120.00114 * 151.81287 * 14 13 12 17 17 N 1.31618 * 119.99718 * 343.07301 * 16 14 13 18 18 Si 1.86797 * 120.00156 * 163.07538 * 16 14 13 19 19 H 1.48502 * 109.47007 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47371 * 119.99584 * 18 16 14 21 21 H 1.48496 * 109.47404 * 239.99976 * 18 16 14 22 22 C 1.46932 * 118.73889 * 306.39294 * 13 12 6 23 23 H 1.09000 * 109.47287 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47077 * 300.00521 * 1 2 3 25 25 H 1.09003 * 109.46687 * 59.99912 * 1 2 3 26 26 H 1.00905 * 111.00044 * 123.95497 * 2 1 3 27 27 H 1.09005 * 109.45895 * 301.33437 * 5 3 2 28 28 H 1.08999 * 109.46261 * 61.29107 * 5 3 2 29 29 H 1.08995 * 109.47511 * 304.83414 * 8 6 5 30 30 H 1.09003 * 109.46946 * 64.84284 * 8 6 5 31 31 H 1.08992 * 109.47327 * 300.00403 * 9 8 6 32 32 H 1.09003 * 109.46780 * 60.00566 * 9 8 6 33 33 H 1.08998 * 109.47039 * 300.00395 * 10 9 8 34 34 H 1.08998 * 109.46713 * 60.00239 * 10 9 8 35 35 H 0.96706 * 114.00072 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.58528 * 294.85201 * 12 6 5 37 37 H 1.08996 * 109.70753 * 174.48774 * 12 6 5 38 38 H 0.97006 * 120.00032 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.58391 * 293.82433 * 22 13 12 40 40 H 1.08995 * 109.58683 * 173.39328 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3408 2.0125 0.5903 5 6 3.4008 1.3791 0.6060 6 6 3.9371 2.8121 0.6365 7 1 3.2649 3.4403 1.2211 8 6 5.3286 2.8230 1.2726 9 6 5.8138 4.2673 1.4130 10 6 7.2051 4.2783 2.0497 11 8 7.6579 5.6272 2.1814 12 6 4.0250 3.3509 -0.7948 13 7 2.7091 3.2126 -1.4337 14 6 2.0983 4.2921 -2.0139 15 1 2.3012 5.2881 -1.6489 16 6 1.2183 4.1063 -3.0712 17 7 1.2155 2.9685 -3.7329 18 14 0.0381 5.4710 -3.5550 19 1 0.2400 6.6399 -2.6616 20 1 0.2960 5.8732 -4.9611 21 1 -1.3594 4.9854 -3.4274 22 6 2.0612 1.8938 -1.4386 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8306 -0.5262 0.7814 27 1 3.3605 0.9847 1.6214 28 1 4.0605 0.7572 0.0010 29 1 5.2817 2.3582 2.2574 30 1 6.0213 2.2669 0.6408 31 1 5.8607 4.7322 0.4284 32 1 5.1212 4.8234 2.0448 33 1 7.1577 3.8135 3.0344 34 1 7.8979 3.7220 1.4183 35 1 8.5354 5.7105 2.5791 36 1 4.7651 2.7799 -1.3554 37 1 4.3127 4.4020 -0.7748 38 1 0.6002 2.8385 -4.4715 39 1 2.6413 1.2041 -2.0517 40 1 1.0523 1.9838 -1.8411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:46 Heat of formation + Delta-G solvation = -69.764379 kcal Electronic energy + Delta-G solvation = -18373.296767 eV Core-core repulsion = 15607.738819 eV Total energy + Delta-G solvation = -2765.557947 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00477 -38.03105 -36.48041 -35.84650 -33.37702 -31.74723 -30.23493 -27.34261 -26.60036 -25.57349 -23.62251 -22.70929 -21.28874 -20.69662 -18.73868 -18.14249 -16.97714 -16.65788 -16.46716 -15.90671 -15.70740 -15.42093 -14.98519 -14.82816 -14.21418 -14.16125 -13.76744 -13.68328 -13.32765 -12.94664 -12.80740 -12.69943 -12.50413 -12.30022 -12.19056 -12.00372 -11.86104 -11.68355 -11.46023 -11.17366 -11.04395 -10.79623 -10.54240 -9.36075 -8.67174 -7.87646 -5.35225 1.42611 1.43865 1.55141 2.48240 3.13183 3.27796 3.45607 3.83211 3.97186 4.02165 4.16388 4.22593 4.30851 4.38436 4.52188 4.54618 4.63446 4.66941 4.77100 4.77809 4.87075 4.90191 5.00424 5.03448 5.05553 5.21153 5.28094 5.32628 5.41201 5.47310 5.58561 5.62922 5.74877 6.12616 6.38238 6.67047 6.96815 7.13980 7.85987 8.37183 9.17267 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.007466 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.783326 B = 3749.315282 C = 5109.473521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.694 5.694 3 C 0.074 3.926 4 H 0.022 0.978 5 C -0.096 4.096 6 C -0.091 4.091 7 H 0.056 0.944 8 C -0.093 4.093 9 C -0.123 4.123 10 C 0.078 3.922 11 O -0.601 6.601 12 C 0.148 3.852 13 N -0.612 5.612 14 C -0.266 4.266 15 H 0.064 0.936 16 C -0.049 4.049 17 N -0.932 5.932 18 Si 0.964 3.036 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.199 3.801 23 H 0.087 0.913 24 H 0.025 0.975 25 H 0.036 0.964 26 H 0.349 0.651 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.396 0.604 36 H 0.010 0.990 37 H 0.048 0.952 38 H 0.249 0.751 39 H -0.009 1.009 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.998 -3.480 14.122 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.326 5.326 3 C -0.038 4.038 4 H 0.040 0.960 5 C -0.134 4.134 6 C -0.112 4.112 7 H 0.075 0.925 8 C -0.131 4.131 9 C -0.161 4.161 10 C 0.001 3.999 11 O -0.409 6.409 12 C 0.023 3.977 13 N -0.336 5.336 14 C -0.396 4.396 15 H 0.081 0.919 16 C -0.245 4.245 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.215 1.215 22 C 0.072 3.928 23 H 0.106 0.894 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.169 0.831 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.009 0.991 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.378 -3.463 13.032 15.371 hybrid contribution -0.549 0.857 0.156 1.030 sum 6.829 -2.606 13.188 15.078 Atomic orbital electron populations 1.22159 0.87636 1.02249 0.99444 1.60237 1.08199 1.14031 1.50144 1.22041 0.95819 0.88266 0.97630 0.95976 1.21564 0.94660 0.96597 1.00565 1.21492 0.97170 0.96180 0.96339 0.92520 1.21373 0.94722 0.95518 1.01478 1.21549 0.96174 0.97596 1.00774 1.22225 0.94932 0.82765 0.99973 1.86460 1.40238 1.28078 1.86153 1.21137 0.86263 0.98196 0.92084 1.44332 1.17160 1.06659 1.65400 1.19520 1.22108 0.88053 1.09928 0.91878 1.25813 1.03337 0.99386 0.95963 1.70228 1.38933 1.26861 1.21714 0.85255 0.78723 0.79256 0.77550 1.19143 1.21646 1.21506 1.20385 0.96660 0.84015 0.91721 0.89393 0.95653 0.94508 0.83143 0.90001 0.91996 0.89587 0.91215 0.93154 0.92411 0.91797 0.92609 0.75398 0.97217 0.93382 0.94152 0.99059 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 10.50 127.69 1.34 2.43 16 2 N -0.69 -23.27 6.66 -514.20 -3.43 -26.70 16 3 C 0.07 2.88 2.64 44.99 0.12 3.00 16 4 H 0.02 0.93 7.80 -2.39 -0.02 0.91 16 5 C -0.10 -3.04 4.45 30.62 0.14 -2.91 16 6 C -0.09 -3.01 2.34 -10.72 -0.03 -3.04 16 7 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 8 C -0.09 -2.25 4.69 30.60 0.14 -2.11 16 9 C -0.12 -3.16 5.34 30.60 0.16 -3.00 16 10 C 0.08 1.55 7.05 71.98 0.51 2.05 16 11 O -0.60 -13.11 13.66 -148.98 -2.03 -15.14 16 12 C 0.15 6.41 5.40 86.36 0.47 6.87 16 13 N -0.61 -32.39 2.99 -699.08 -2.09 -34.48 16 14 C -0.27 -15.37 9.58 84.03 0.81 -14.56 16 15 H 0.06 3.58 7.88 -2.91 -0.02 3.56 16 16 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 17 N -0.93 -57.53 11.20 21.65 0.24 -57.28 16 18 Si 0.96 46.52 29.59 68.60 2.03 48.55 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 22 C 0.20 10.20 4.77 86.36 0.41 10.61 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 25 H 0.04 1.39 7.56 -2.39 -0.02 1.37 16 26 H 0.35 9.21 8.42 -89.69 -0.76 8.46 16 27 H 0.08 2.02 8.10 -2.38 -0.02 2.00 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.53 6.70 -2.39 -0.02 1.51 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.40 4.40 9.12 -74.05 -0.68 3.72 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.05 2.09 6.65 -2.39 -0.02 2.08 16 38 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.05 2.69 5.53 -2.39 -0.01 2.68 16 Total: -1.00 -70.92 312.66 -1.21 -72.13 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.42 Total: 16.04 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.49 Total: -3.11 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -5.28 Total: -118.47 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -2.03 Total: -15.14 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -70.92 -1.21 -72.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.371 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds