Wall clock time and date at job start Mon Mar 30 2020 03:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47568 * 2 1 4 4 C 1.46896 * 111.00405 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.49652 * 325.06117 * 4 3 2 6 6 C 1.53044 * 109.49796 * 204.99985 * 4 3 2 7 7 C 1.53041 * 109.53531 * 301.40950 * 6 4 3 8 8 H 1.08999 * 109.49798 * 58.58710 * 7 6 4 9 9 C 1.53005 * 109.49216 * 178.68524 * 7 6 4 10 10 C 1.53003 * 109.46680 * 184.83651 * 9 7 6 11 11 O 1.42897 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53193 * 109.31275 * 298.63316 * 7 6 4 13 13 N 1.46923 * 108.77321 * 54.63783 * 12 7 6 14 14 C 1.36946 * 120.63019 * 126.40870 * 13 12 7 15 15 H 1.08001 * 119.99866 * 331.84043 * 14 13 12 16 16 C 1.38810 * 119.99911 * 151.83142 * 14 13 12 17 17 N 1.31621 * 120.00138 * 343.07152 * 16 14 13 18 18 Si 1.86801 * 119.99885 * 163.06335 * 16 14 13 19 19 H 1.48500 * 109.46992 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47220 * 120.00310 * 18 16 14 21 21 H 1.48506 * 109.47180 * 240.00291 * 18 16 14 22 22 C 1.46922 * 118.74240 * 306.38717 * 13 12 7 23 23 H 1.09000 * 109.47073 * 300.00272 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99799 * 1 2 3 25 25 H 1.08995 * 109.47498 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47073 * 239.99728 * 2 1 3 27 27 H 1.09001 * 109.47172 * 120.00201 * 2 1 3 28 28 H 1.00896 * 111.00026 * 56.03994 * 3 2 1 29 29 H 1.08999 * 109.45505 * 181.39173 * 6 4 3 30 30 H 1.08994 * 109.45105 * 61.42565 * 6 4 3 31 31 H 1.09000 * 109.47052 * 304.83889 * 9 7 6 32 32 H 1.08999 * 109.47002 * 64.84003 * 9 7 6 33 33 H 1.08998 * 109.47206 * 300.00307 * 10 9 7 34 34 H 1.09002 * 109.46661 * 60.00196 * 10 9 7 35 35 H 0.96703 * 113.99930 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.58335 * 174.42336 * 12 7 6 37 37 H 1.08997 * 109.59188 * 294.84818 * 12 7 6 38 38 H 0.97004 * 119.99924 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.58653 * 293.82425 * 22 13 12 40 40 H 1.09001 * 109.70719 * 173.46149 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8745 0.5917 0.5876 6 6 3.9642 2.7447 0.6091 7 6 3.3947 3.9148 -0.1962 8 1 2.3059 3.8623 -0.1940 9 6 3.8443 5.2348 0.4335 10 6 3.1781 6.4018 -0.2980 11 8 3.5975 7.6346 0.2905 12 6 3.9075 3.8351 -1.6376 13 7 3.5800 2.5109 -2.1834 14 6 2.8947 2.3925 -3.3632 15 1 2.2120 3.1705 -3.6715 16 6 3.0778 1.2727 -4.1627 17 7 4.1249 0.4968 -3.9788 18 14 1.8378 0.8669 -5.4996 19 1 0.7599 1.8883 -5.5015 20 1 2.5172 0.8624 -6.8201 21 1 1.2509 -0.4724 -5.2404 22 6 4.0020 1.3161 -1.4398 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6442 1.9012 0.7813 29 1 5.0532 2.7836 0.5857 30 1 3.6204 2.8127 1.6412 31 1 3.5562 5.2527 1.4846 32 1 4.9275 5.3258 0.3521 33 1 3.4662 6.3839 -1.3491 34 1 2.0949 6.3107 -0.2166 35 1 3.2130 8.4192 -0.1239 36 1 3.4279 4.6072 -2.2392 37 1 4.9880 3.9782 -1.6495 38 1 4.2526 -0.2860 -4.5374 39 1 5.0902 1.2538 -1.4355 40 1 3.5867 0.4248 -1.9100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108020035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:35 Heat of formation + Delta-G solvation = -39.904966 kcal Electronic energy + Delta-G solvation = -18842.757306 eV Core-core repulsion = 16078.494161 eV Total energy + Delta-G solvation = -2764.263146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.54786 -36.76137 -34.94255 -33.61933 -31.42355 -30.41275 -27.91034 -26.95884 -25.22580 -23.06986 -21.77237 -21.51847 -20.22147 -18.58687 -17.17897 -16.45255 -15.37567 -15.06430 -14.74318 -14.32187 -14.11382 -13.98725 -13.55692 -13.11427 -12.79234 -12.51900 -12.16865 -11.77686 -11.65322 -11.35489 -11.12335 -11.02480 -10.88135 -10.73884 -10.63641 -10.46564 -10.29492 -10.07071 -9.82235 -9.72265 -9.40699 -9.35648 -8.34234 -7.60552 -6.48035 -5.65210 -3.04131 3.43976 3.51852 3.54315 4.37812 4.60763 4.79002 5.25934 5.34522 5.44026 5.48790 5.52287 5.64096 5.67960 5.73086 5.76439 5.88409 5.90138 6.07859 6.14148 6.20654 6.30614 6.35794 6.38067 6.50222 6.54550 6.59582 6.63935 6.87798 6.91369 7.12613 7.30748 7.67469 7.73000 7.86128 7.91401 8.12383 8.59891 9.35580 10.00148 10.56995 11.43584 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.008661 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.290190 B = 3232.089332 C = 4049.786332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.658 5.658 4 C 0.061 3.939 5 H 0.026 0.974 6 C -0.103 4.103 7 C -0.097 4.097 8 H 0.078 0.922 9 C -0.111 4.111 10 C 0.074 3.926 11 O -0.581 6.581 12 C 0.155 3.845 13 N -0.575 5.575 14 C -0.227 4.227 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.909 5.909 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.294 1.294 21 H -0.291 1.291 22 C 0.184 3.816 23 H 0.044 0.956 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.013 0.987 28 H 0.322 0.678 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.374 0.626 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.249 0.751 39 H 0.016 0.984 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 5.008 9.442 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 N -0.290 5.290 4 C -0.050 4.050 5 H 0.044 0.956 6 C -0.141 4.141 7 C -0.117 4.117 8 H 0.096 0.904 9 C -0.149 4.149 10 C -0.003 4.003 11 O -0.387 6.387 12 C 0.028 3.972 13 N -0.296 5.296 14 C -0.357 4.357 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.555 5.555 18 Si 0.728 3.272 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.218 1.218 22 C 0.057 3.943 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.220 0.780 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.113 4.511 9.014 10.550 hybrid contribution -0.768 -0.288 -0.118 0.828 sum -3.881 4.223 8.897 10.585 Atomic orbital electron populations 1.21724 0.95834 1.00789 1.01964 1.21883 0.94902 0.90452 0.99815 1.60386 1.08010 1.12293 1.48267 1.22353 0.87341 0.94737 1.00553 0.95632 1.21591 1.00266 0.95228 0.97062 1.21543 1.01305 0.91264 0.97622 0.90354 1.21564 1.00800 0.93298 0.99235 1.22320 0.97611 0.83666 0.96748 1.86453 1.73686 1.16207 1.62308 1.20922 0.96035 0.89202 0.90996 1.43716 1.65052 0.98859 1.21986 1.19109 1.15755 1.05281 0.95528 0.92198 1.24918 0.96933 1.00220 0.97791 1.70037 1.26522 1.17492 1.41421 0.86294 0.81313 0.77990 0.81618 1.20433 1.22122 1.21838 1.20741 0.94842 0.92446 0.86240 0.93658 0.91619 0.93047 0.90681 0.96939 0.86146 0.92113 0.93864 0.92307 0.91777 0.92998 0.93864 0.77980 0.93146 0.96905 0.94044 0.96651 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.17 37.15 0.38 -1.75 16 2 C 0.06 1.00 6.20 -3.83 -0.02 0.97 16 3 N -0.66 -11.92 5.47 -106.60 -0.58 -12.51 16 4 C 0.06 1.16 2.85 -67.59 -0.19 0.97 16 5 H 0.03 0.47 7.80 -51.93 -0.41 0.07 16 6 C -0.10 -1.73 4.55 -26.69 -0.12 -1.85 16 7 C -0.10 -1.66 2.18 -90.50 -0.20 -1.85 16 8 H 0.08 1.41 7.36 -51.93 -0.38 1.03 16 9 C -0.11 -1.65 5.06 -26.73 -0.14 -1.78 16 10 C 0.07 1.02 6.81 37.16 0.25 1.27 16 11 O -0.58 -7.68 13.66 -35.23 -0.48 -8.16 16 12 C 0.16 3.24 5.41 -3.71 -0.02 3.22 16 13 N -0.58 -14.29 2.91 -172.32 -0.50 -14.79 16 14 C -0.23 -6.24 9.58 -15.06 -0.14 -6.38 16 15 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 16 C 0.00 -0.04 4.92 -17.43 -0.09 -0.13 16 17 N -0.91 -26.60 11.19 55.49 0.62 -25.98 16 18 Si 0.90 22.16 29.59 -169.99 -5.03 17.13 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 C 0.18 4.39 4.86 -3.71 -0.02 4.37 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 1.48 7.38 -51.93 -0.38 1.09 16 27 H 0.01 0.19 8.06 -51.93 -0.42 -0.22 16 28 H 0.32 5.17 8.13 -39.29 -0.32 4.85 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.37 3.14 9.12 45.56 0.42 3.55 16 36 H 0.05 1.04 6.65 -51.93 -0.35 0.69 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.39 5.30 -51.93 -0.27 2.11 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -30.49 310.82 -7.83 -38.33 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.24 Total: 4.24 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.31 Total: -2.94 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.46 Total: -53.27 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.48 Total: -8.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.49 -7.83 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108020035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.578 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds