Wall clock time and date at job start Mon Mar 30 2020 03:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47568 * 2 1 4 4 C 1.46896 * 111.00405 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.49652 * 325.06117 * 4 3 2 6 6 C 1.53044 * 109.49796 * 204.99985 * 4 3 2 7 7 C 1.53041 * 109.53531 * 301.40950 * 6 4 3 8 8 H 1.08999 * 109.49798 * 58.58710 * 7 6 4 9 9 C 1.53005 * 109.49216 * 178.68524 * 7 6 4 10 10 C 1.53003 * 109.46680 * 184.83651 * 9 7 6 11 11 O 1.42897 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.53193 * 109.31275 * 298.63316 * 7 6 4 13 13 N 1.46923 * 108.77321 * 54.63783 * 12 7 6 14 14 C 1.36946 * 120.63019 * 126.40870 * 13 12 7 15 15 H 1.08001 * 119.99866 * 331.84043 * 14 13 12 16 16 C 1.38810 * 119.99911 * 151.83142 * 14 13 12 17 17 N 1.31621 * 120.00138 * 343.07152 * 16 14 13 18 18 Si 1.86801 * 119.99885 * 163.06335 * 16 14 13 19 19 H 1.48500 * 109.46992 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47220 * 120.00310 * 18 16 14 21 21 H 1.48506 * 109.47180 * 240.00291 * 18 16 14 22 22 C 1.46922 * 118.74240 * 306.38717 * 13 12 7 23 23 H 1.09000 * 109.47073 * 300.00272 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99799 * 1 2 3 25 25 H 1.08995 * 109.47498 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47073 * 239.99728 * 2 1 3 27 27 H 1.09001 * 109.47172 * 120.00201 * 2 1 3 28 28 H 1.00896 * 111.00026 * 56.03994 * 3 2 1 29 29 H 1.08999 * 109.45505 * 181.39173 * 6 4 3 30 30 H 1.08994 * 109.45105 * 61.42565 * 6 4 3 31 31 H 1.09000 * 109.47052 * 304.83889 * 9 7 6 32 32 H 1.08999 * 109.47002 * 64.84003 * 9 7 6 33 33 H 1.08998 * 109.47206 * 300.00307 * 10 9 7 34 34 H 1.09002 * 109.46661 * 60.00196 * 10 9 7 35 35 H 0.96703 * 113.99930 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.58335 * 174.42336 * 12 7 6 37 37 H 1.08997 * 109.59188 * 294.84818 * 12 7 6 38 38 H 0.97004 * 119.99924 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.58653 * 293.82425 * 22 13 12 40 40 H 1.09001 * 109.70719 * 173.46149 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8745 0.5917 0.5876 6 6 3.9642 2.7447 0.6091 7 6 3.3947 3.9148 -0.1962 8 1 2.3059 3.8623 -0.1940 9 6 3.8443 5.2348 0.4335 10 6 3.1781 6.4018 -0.2980 11 8 3.5975 7.6346 0.2905 12 6 3.9075 3.8351 -1.6376 13 7 3.5800 2.5109 -2.1834 14 6 2.8947 2.3925 -3.3632 15 1 2.2120 3.1705 -3.6715 16 6 3.0778 1.2727 -4.1627 17 7 4.1249 0.4968 -3.9788 18 14 1.8378 0.8669 -5.4996 19 1 0.7599 1.8883 -5.5015 20 1 2.5172 0.8624 -6.8201 21 1 1.2509 -0.4724 -5.2404 22 6 4.0020 1.3161 -1.4398 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6442 1.9012 0.7813 29 1 5.0532 2.7836 0.5857 30 1 3.6204 2.8127 1.6412 31 1 3.5562 5.2527 1.4846 32 1 4.9275 5.3258 0.3521 33 1 3.4662 6.3839 -1.3491 34 1 2.0949 6.3107 -0.2166 35 1 3.2130 8.4192 -0.1239 36 1 3.4279 4.6072 -2.2392 37 1 4.9880 3.9782 -1.6495 38 1 4.2526 -0.2860 -4.5374 39 1 5.0902 1.2538 -1.4355 40 1 3.5867 0.4248 -1.9100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108020035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:35 Heat of formation + Delta-G solvation = -62.445541 kcal Electronic energy + Delta-G solvation = -18843.734739 eV Core-core repulsion = 16078.494161 eV Total energy + Delta-G solvation = -2765.240579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08483 -37.87911 -36.43997 -35.33543 -32.93747 -32.24964 -29.21146 -28.52890 -27.18303 -24.39253 -23.58808 -22.86417 -21.63687 -20.20020 -18.57803 -18.07791 -16.86223 -16.70201 -16.23003 -15.78487 -15.76449 -15.36546 -14.97273 -14.61929 -14.41887 -14.03274 -13.78389 -13.28911 -13.04379 -12.85777 -12.74427 -12.57857 -12.44351 -12.30423 -12.22785 -11.98550 -11.94724 -11.83587 -11.40055 -11.15189 -11.02716 -10.71677 -10.45184 -9.05690 -8.50976 -7.76909 -5.18732 1.45410 1.47677 1.57530 2.56444 3.30980 3.37225 3.44387 3.83339 4.01927 4.07876 4.14919 4.28823 4.35097 4.44523 4.52451 4.61341 4.64310 4.68827 4.74875 4.86509 4.93925 4.98928 5.05791 5.13037 5.14501 5.20194 5.29144 5.33467 5.38310 5.48961 5.65698 5.71972 5.79395 6.33229 6.50000 6.81970 6.94069 7.25701 7.99153 8.50240 9.28756 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.008661 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.290190 B = 3232.089332 C = 4049.786332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 N -0.671 5.671 4 C 0.072 3.928 5 H 0.035 0.965 6 C -0.099 4.099 7 C -0.080 4.080 8 H 0.075 0.925 9 C -0.104 4.104 10 C 0.077 3.923 11 O -0.593 6.593 12 C 0.152 3.848 13 N -0.590 5.590 14 C -0.231 4.231 15 H 0.058 0.942 16 C -0.053 4.053 17 N -0.940 5.940 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.296 1.296 21 H -0.294 1.294 22 C 0.191 3.809 23 H 0.068 0.932 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.339 0.661 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.049 0.951 37 H 0.003 0.997 38 H 0.244 0.756 39 H -0.013 1.013 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 6.136 11.289 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 N -0.304 5.304 4 C -0.040 4.040 5 H 0.053 0.947 6 C -0.137 4.137 7 C -0.100 4.100 8 H 0.094 0.906 9 C -0.142 4.142 10 C -0.001 4.001 11 O -0.401 6.401 12 C 0.026 3.974 13 N -0.312 5.312 14 C -0.361 4.361 15 H 0.076 0.924 16 C -0.247 4.247 17 N -0.588 5.588 18 Si 0.786 3.214 19 H -0.193 1.193 20 H -0.224 1.224 21 H -0.222 1.222 22 C 0.064 3.936 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.158 0.842 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.021 0.979 38 H 0.054 0.946 39 H 0.005 0.995 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.525 5.685 10.884 13.086 hybrid contribution -0.298 -0.580 -0.696 0.953 sum -4.823 5.106 10.188 12.374 Atomic orbital electron populations 1.21653 0.93823 1.01955 1.02015 1.21841 0.96507 0.89733 0.98823 1.60208 1.07306 1.13340 1.49519 1.22047 0.88164 0.96649 0.97094 0.94745 1.21574 1.00159 0.93380 0.98578 1.21297 1.00801 0.92972 0.94915 0.90647 1.21449 1.00460 0.92263 1.00000 1.22204 0.98029 0.83833 0.96008 1.86394 1.74198 1.16850 1.62703 1.21073 0.95527 0.87238 0.93557 1.43933 1.64988 1.00518 1.21748 1.19367 1.15436 1.05043 0.96296 0.92395 1.25588 0.98487 1.00510 1.00157 1.70189 1.28196 1.17852 1.42546 0.85351 0.79438 0.77584 0.78989 1.19296 1.22353 1.22156 1.20515 0.92987 0.90897 0.89181 0.91295 0.93727 0.91417 0.94558 0.94956 0.84161 0.92353 0.90358 0.90606 0.92373 0.93938 0.92826 0.75547 0.93243 0.97921 0.94646 0.99538 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 10.17 71.98 0.73 -2.99 16 2 C 0.06 1.98 6.20 86.30 0.54 2.51 16 3 N -0.67 -23.27 5.47 -491.17 -2.68 -25.95 16 4 C 0.07 2.66 2.85 45.00 0.13 2.79 16 5 H 0.03 1.23 7.80 -2.39 -0.02 1.21 16 6 C -0.10 -3.08 4.55 30.62 0.14 -2.94 16 7 C -0.08 -2.56 2.18 -10.71 -0.02 -2.59 16 8 H 0.08 2.52 7.36 -2.39 -0.02 2.50 16 9 C -0.10 -2.80 5.06 30.60 0.15 -2.64 16 10 C 0.08 1.93 6.81 71.98 0.49 2.42 16 11 O -0.59 -14.02 13.66 -148.98 -2.03 -16.06 16 12 C 0.15 6.30 5.41 86.36 0.47 6.77 16 13 N -0.59 -29.84 2.91 -699.11 -2.04 -31.87 16 14 C -0.23 -12.91 9.58 84.03 0.81 -12.11 16 15 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 16 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 17 N -0.94 -57.11 11.19 21.65 0.24 -56.87 16 18 Si 0.96 46.50 29.59 68.60 2.03 48.53 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 21 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 22 C 0.19 9.38 4.86 86.36 0.42 9.80 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.46 7.38 -2.39 -0.02 1.44 16 27 H 0.03 0.94 8.06 -2.39 -0.02 0.92 16 28 H 0.34 9.82 8.13 -89.70 -0.73 9.09 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.14 6.70 -2.39 -0.02 1.12 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.40 5.53 9.12 -74.06 -0.68 4.86 16 36 H 0.05 2.03 6.65 -2.39 -0.02 2.01 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.05 2.92 5.30 -2.39 -0.01 2.91 16 Total: -1.00 -66.99 310.82 -0.61 -67.60 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.39 Total: 16.23 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 4.27 Total: -1.61 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.48 Total: -114.69 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -2.03 Total: -16.06 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -66.99 -0.61 -67.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108020035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.151 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds