Wall clock time and date at job start Mon Mar 30 2020 03:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47204 * 2 1 4 4 C 1.46896 * 110.99978 * 185.13641 * 3 2 1 5 5 H 1.09005 * 109.49843 * 326.29168 * 4 3 2 6 6 C 1.53041 * 109.47172 * 206.21236 * 4 3 2 7 7 C 1.53036 * 109.53661 * 301.36266 * 6 4 3 8 8 H 1.08999 * 109.49836 * 58.65036 * 7 6 4 9 9 C 1.52998 * 109.49674 * 178.71522 * 7 6 4 10 10 H 1.09001 * 109.47227 * 59.93818 * 9 7 6 11 11 C 1.53004 * 109.47396 * 179.97438 * 9 7 6 12 12 O 1.42900 * 109.47316 * 299.93787 * 9 7 6 13 13 C 1.53193 * 109.33996 * 298.68467 * 7 6 4 14 14 N 1.46921 * 108.77530 * 54.62035 * 13 7 6 15 15 C 1.36940 * 120.63007 * 126.37192 * 14 13 7 16 16 H 1.07999 * 119.99974 * 332.38509 * 15 14 13 17 17 C 1.38808 * 119.99807 * 152.38048 * 15 14 13 18 18 N 1.31621 * 119.99917 * 161.54758 * 17 15 14 19 19 Si 1.86800 * 120.00391 * 341.54983 * 17 15 14 20 20 H 1.48494 * 109.47221 * 95.18359 * 19 17 15 21 21 H 1.48502 * 109.46871 * 215.18591 * 19 17 15 22 22 H 1.48500 * 109.46834 * 335.18034 * 19 17 15 23 23 C 1.46922 * 118.74085 * 306.38817 * 14 13 7 24 24 H 1.09002 * 109.47205 * 300.00628 * 1 2 3 25 25 H 1.08999 * 109.47169 * 60.00389 * 1 2 3 26 26 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47205 * 239.99372 * 2 1 3 28 28 H 1.08999 * 109.47169 * 119.99611 * 2 1 3 29 29 H 1.00896 * 111.00240 * 61.17936 * 3 2 1 30 30 H 1.09000 * 109.43171 * 181.35620 * 6 4 3 31 31 H 1.08995 * 109.48615 * 61.40340 * 6 4 3 32 32 H 1.09004 * 109.46999 * 179.97438 * 11 9 7 33 33 H 1.08991 * 109.46995 * 300.00541 * 11 9 7 34 34 H 1.09001 * 109.46653 * 59.99991 * 11 9 7 35 35 H 0.96700 * 113.99698 * 299.99782 * 12 9 7 36 36 H 1.09002 * 109.58525 * 174.40766 * 13 7 6 37 37 H 1.09001 * 109.58425 * 294.82958 * 13 7 6 38 38 H 0.96996 * 120.00606 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58877 * 173.39887 * 23 14 13 40 40 H 1.09004 * 109.58753 * 293.82540 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4829 1.4260 -0.1228 5 1 3.9151 0.5651 0.3873 6 6 4.0121 2.7146 0.5109 7 6 3.3808 3.9233 -0.1838 8 1 2.2959 3.8699 -0.0922 9 6 3.8859 5.2103 0.4714 10 1 4.9707 5.2633 0.3795 11 6 3.2549 6.4183 -0.2239 12 8 3.5242 5.2147 1.8539 13 6 3.7696 3.9171 -1.6655 14 7 3.3931 2.6219 -2.2479 15 6 2.6096 2.5624 -3.3694 16 1 1.9116 3.3583 -3.5833 17 6 2.7127 1.4793 -4.2314 18 7 1.7459 1.2253 -5.0876 19 14 4.2235 0.3821 -4.1762 20 1 3.9513 -0.7919 -3.3086 21 1 4.5488 -0.0816 -5.5490 22 1 5.3715 1.1477 -3.6274 23 6 3.8729 1.3916 -1.6039 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7121 1.8773 0.8253 30 1 5.0955 2.7559 0.3981 31 1 3.7567 2.7303 1.5704 32 1 3.6144 7.3352 0.2433 33 1 3.5301 6.4152 -1.2785 34 1 2.1701 6.3650 -0.1314 35 1 2.5712 5.1695 2.0112 36 1 3.2432 4.7181 -2.1848 37 1 4.8457 4.0621 -1.7615 38 1 1.8176 0.4683 -5.6897 39 1 3.4148 0.5260 -2.0824 40 1 4.9574 1.3305 -1.6948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108020113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:43 Heat of formation + Delta-G solvation = -31.545442 kcal Electronic energy + Delta-G solvation = -19215.056503 eV Core-core repulsion = 16451.155854 eV Total energy + Delta-G solvation = -2763.900650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.08386 -36.91444 -34.93692 -32.93749 -31.48257 -30.77925 -28.80978 -27.37265 -25.21792 -23.66377 -21.69669 -21.54214 -20.83404 -19.04940 -16.74221 -16.12474 -15.69725 -15.37047 -14.99217 -14.41204 -14.14284 -13.61060 -13.54273 -13.32252 -13.01418 -12.62157 -12.56240 -12.08074 -11.88004 -11.56654 -11.35556 -11.27759 -11.10141 -10.95410 -10.79531 -10.61334 -10.42310 -10.11686 -9.89430 -9.67512 -9.53464 -9.27416 -8.51628 -7.75397 -6.78881 -5.81523 -3.15042 3.36748 3.53215 3.55066 4.53253 4.60121 4.64037 4.91351 5.15591 5.20984 5.29437 5.46734 5.51446 5.60029 5.63928 5.65923 5.74865 5.86223 5.89774 6.03443 6.09504 6.12273 6.19465 6.25477 6.27433 6.36137 6.38884 6.54282 6.62969 6.68765 6.69490 6.72881 6.99334 7.61003 7.77729 7.95660 8.10564 8.45216 9.07056 9.85807 10.24393 11.35284 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.010016 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.754968 B = 2794.939760 C = 3492.477209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.657 5.657 4 C 0.069 3.931 5 H 0.030 0.970 6 C -0.101 4.101 7 C -0.130 4.130 8 H 0.083 0.917 9 C 0.105 3.895 10 H 0.092 0.908 11 C -0.184 4.184 12 O -0.569 6.569 13 C 0.160 3.840 14 N -0.589 5.589 15 C -0.236 4.236 16 H 0.082 0.918 17 C 0.020 3.980 18 N -0.915 5.915 19 Si 0.881 3.119 20 H -0.294 1.294 21 H -0.307 1.307 22 H -0.271 1.271 23 C 0.137 3.863 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.014 0.986 29 H 0.327 0.673 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.371 0.629 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 3.446 12.754 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 N -0.288 5.288 4 C -0.042 4.042 5 H 0.048 0.952 6 C -0.139 4.139 7 C -0.150 4.150 8 H 0.101 0.899 9 C 0.046 3.954 10 H 0.110 0.890 11 C -0.242 4.242 12 O -0.374 6.374 13 C 0.034 3.966 14 N -0.311 5.311 15 C -0.365 4.365 16 H 0.099 0.901 17 C -0.177 4.177 18 N -0.559 5.559 19 Si 0.713 3.287 20 H -0.223 1.223 21 H -0.236 1.236 22 H -0.196 1.196 23 C 0.010 3.990 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.144 0.856 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.217 0.783 36 H 0.082 0.918 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.515 3.480 11.979 12.725 hybrid contribution 0.457 -1.198 0.705 1.463 sum 2.972 2.282 12.684 13.226 Atomic orbital electron populations 1.21697 0.95291 1.00863 1.02345 1.21882 0.95652 0.90027 0.99480 1.60302 1.10181 1.13861 1.44485 1.22092 0.87791 0.95701 0.98646 0.95221 1.21533 0.99766 0.94390 0.98252 1.22291 1.01586 0.93119 0.98037 0.89869 1.21983 0.99436 0.93688 0.80308 0.89021 1.22515 1.01355 0.98288 1.01992 1.86524 1.28499 1.96969 1.25404 1.20868 0.96486 0.89040 0.90246 1.44015 1.59369 0.98827 1.28849 1.18826 1.13014 1.07872 0.96746 0.90056 1.25188 0.97584 0.98146 0.96788 1.69818 1.31416 1.29711 1.24980 0.86980 0.86055 0.80449 0.75205 1.22271 1.23557 1.19602 1.21376 0.95614 0.91318 0.90678 0.93599 0.91111 0.93040 0.91145 0.96805 0.85574 0.92244 0.92597 0.92657 0.90918 0.92366 0.78280 0.91824 0.96447 0.93123 0.91144 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.22 37.16 0.38 -1.79 16 2 C 0.06 0.98 6.17 -3.82 -0.02 0.96 16 3 N -0.66 -11.50 5.46 -106.60 -0.58 -12.08 16 4 C 0.07 1.24 2.85 -67.59 -0.19 1.04 16 5 H 0.03 0.51 7.84 -51.93 -0.41 0.10 16 6 C -0.10 -1.58 4.42 -26.69 -0.12 -1.70 16 7 C -0.13 -2.02 1.95 -90.50 -0.18 -2.20 16 8 H 0.08 1.39 7.33 -51.93 -0.38 1.01 16 9 C 0.10 1.38 3.17 -26.73 -0.08 1.30 16 10 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.18 -2.22 9.19 37.16 0.34 -1.87 16 12 O -0.57 -7.25 12.65 -35.23 -0.45 -7.70 16 13 C 0.16 3.07 5.27 -3.71 -0.02 3.05 16 14 N -0.59 -13.85 2.70 -172.32 -0.46 -14.31 16 15 C -0.24 -6.59 10.05 -15.06 -0.15 -6.75 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 17 C 0.02 0.60 5.27 -17.43 -0.09 0.50 16 18 N -0.91 -28.42 13.97 55.49 0.78 -27.64 16 19 Si 0.88 22.89 24.32 -169.99 -4.13 18.75 16 20 H -0.29 -7.47 6.73 56.52 0.38 -7.09 16 21 H -0.31 -8.14 7.11 56.52 0.40 -7.74 16 22 H -0.27 -6.86 6.28 56.52 0.35 -6.50 16 23 C 0.14 3.02 3.73 -3.71 -0.01 3.01 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.36 7.38 -51.93 -0.38 0.98 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.33 4.99 8.11 -39.29 -0.32 4.67 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.80 7.64 -51.93 -0.40 0.40 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.91 6.56 -51.93 -0.34 0.57 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.37 3.59 9.04 45.56 0.41 4.00 16 36 H 0.06 1.22 6.55 -51.93 -0.34 0.88 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.07 1.74 3.70 -51.93 -0.19 1.55 16 40 H 0.02 0.53 6.88 -51.93 -0.36 0.17 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -31.19 302.18 -6.58 -37.78 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.14 Total: 5.09 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.15 Total: -4.44 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.27 Total: -54.03 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.45 Total: -7.70 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.13 Total: 18.75 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.19 -6.58 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108020113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.232 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds