Wall clock time and date at job start Mon Mar 30 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47204 * 2 1 4 4 C 1.46896 * 110.99978 * 185.13641 * 3 2 1 5 5 H 1.09005 * 109.49843 * 326.29168 * 4 3 2 6 6 C 1.53041 * 109.47172 * 206.21236 * 4 3 2 7 7 C 1.53036 * 109.53661 * 301.36266 * 6 4 3 8 8 H 1.08999 * 109.49836 * 58.65036 * 7 6 4 9 9 C 1.52998 * 109.49674 * 178.71522 * 7 6 4 10 10 H 1.09001 * 109.47227 * 59.93818 * 9 7 6 11 11 C 1.53004 * 109.47396 * 179.97438 * 9 7 6 12 12 O 1.42900 * 109.47316 * 299.93787 * 9 7 6 13 13 C 1.53193 * 109.33996 * 298.68467 * 7 6 4 14 14 N 1.46921 * 108.77530 * 54.62035 * 13 7 6 15 15 C 1.36940 * 120.63007 * 126.37192 * 14 13 7 16 16 H 1.07999 * 119.99974 * 332.38509 * 15 14 13 17 17 C 1.38808 * 119.99807 * 152.38048 * 15 14 13 18 18 N 1.31621 * 119.99917 * 161.54758 * 17 15 14 19 19 Si 1.86800 * 120.00391 * 341.54983 * 17 15 14 20 20 H 1.48494 * 109.47221 * 95.18359 * 19 17 15 21 21 H 1.48502 * 109.46871 * 215.18591 * 19 17 15 22 22 H 1.48500 * 109.46834 * 335.18034 * 19 17 15 23 23 C 1.46922 * 118.74085 * 306.38817 * 14 13 7 24 24 H 1.09002 * 109.47205 * 300.00628 * 1 2 3 25 25 H 1.08999 * 109.47169 * 60.00389 * 1 2 3 26 26 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47205 * 239.99372 * 2 1 3 28 28 H 1.08999 * 109.47169 * 119.99611 * 2 1 3 29 29 H 1.00896 * 111.00240 * 61.17936 * 3 2 1 30 30 H 1.09000 * 109.43171 * 181.35620 * 6 4 3 31 31 H 1.08995 * 109.48615 * 61.40340 * 6 4 3 32 32 H 1.09004 * 109.46999 * 179.97438 * 11 9 7 33 33 H 1.08991 * 109.46995 * 300.00541 * 11 9 7 34 34 H 1.09001 * 109.46653 * 59.99991 * 11 9 7 35 35 H 0.96700 * 113.99698 * 299.99782 * 12 9 7 36 36 H 1.09002 * 109.58525 * 174.40766 * 13 7 6 37 37 H 1.09001 * 109.58425 * 294.82958 * 13 7 6 38 38 H 0.96996 * 120.00606 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.58877 * 173.39887 * 23 14 13 40 40 H 1.09004 * 109.58753 * 293.82540 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4829 1.4260 -0.1228 5 1 3.9151 0.5651 0.3873 6 6 4.0121 2.7146 0.5109 7 6 3.3808 3.9233 -0.1838 8 1 2.2959 3.8699 -0.0922 9 6 3.8859 5.2103 0.4714 10 1 4.9707 5.2633 0.3795 11 6 3.2549 6.4183 -0.2239 12 8 3.5242 5.2147 1.8539 13 6 3.7696 3.9171 -1.6655 14 7 3.3931 2.6219 -2.2479 15 6 2.6096 2.5624 -3.3694 16 1 1.9116 3.3583 -3.5833 17 6 2.7127 1.4793 -4.2314 18 7 1.7459 1.2253 -5.0876 19 14 4.2235 0.3821 -4.1762 20 1 3.9513 -0.7919 -3.3086 21 1 4.5488 -0.0816 -5.5490 22 1 5.3715 1.1477 -3.6274 23 6 3.8729 1.3916 -1.6039 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7121 1.8773 0.8253 30 1 5.0955 2.7559 0.3981 31 1 3.7567 2.7303 1.5704 32 1 3.6144 7.3352 0.2433 33 1 3.5301 6.4152 -1.2785 34 1 2.1701 6.3650 -0.1314 35 1 2.5712 5.1695 2.0112 36 1 3.2432 4.7181 -2.1848 37 1 4.8457 4.0621 -1.7615 38 1 1.8176 0.4683 -5.6897 39 1 3.4148 0.5260 -2.0824 40 1 4.9574 1.3305 -1.6948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108020113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:42 Heat of formation + Delta-G solvation = -56.143093 kcal Electronic energy + Delta-G solvation = -19216.123138 eV Core-core repulsion = 16451.155854 eV Total energy + Delta-G solvation = -2764.967284 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47094 -38.10999 -36.50769 -34.60189 -32.88591 -32.57714 -29.99432 -28.83556 -27.12243 -24.95896 -23.39276 -22.93116 -22.08859 -20.57169 -18.62729 -17.51327 -17.08386 -16.98470 -16.27051 -15.81386 -15.61761 -15.20098 -15.13496 -14.73986 -14.43669 -14.16503 -13.95626 -13.69887 -13.20652 -13.08046 -12.82194 -12.68961 -12.59594 -12.31162 -12.17428 -12.11456 -11.90500 -11.67426 -11.56415 -11.37742 -11.18212 -10.75456 -10.47709 -9.14061 -8.73337 -8.07443 -5.35398 1.27634 1.38806 1.46996 2.45796 3.11239 3.29475 3.46176 3.56102 3.83734 3.98824 4.08327 4.21973 4.34711 4.41101 4.42918 4.49115 4.56071 4.62650 4.69296 4.72586 4.78353 4.90342 4.98216 5.00924 5.05432 5.11242 5.16160 5.19690 5.35227 5.38366 5.39720 5.64981 5.93740 6.20284 6.27350 6.73209 6.93163 7.02294 7.73667 8.14711 9.13365 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.010016 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.754968 B = 2794.939760 C = 3492.477209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 N -0.675 5.675 4 C 0.075 3.925 5 H 0.046 0.954 6 C -0.094 4.094 7 C -0.115 4.115 8 H 0.073 0.927 9 C 0.118 3.882 10 H 0.094 0.906 11 C -0.181 4.181 12 O -0.572 6.572 13 C 0.154 3.846 14 N -0.601 5.601 15 C -0.215 4.215 16 H 0.048 0.952 17 C -0.039 4.039 18 N -0.964 5.964 19 Si 0.943 3.057 20 H -0.289 1.289 21 H -0.317 1.317 22 H -0.258 1.258 23 C 0.130 3.870 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.343 0.657 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.385 0.615 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.256 0.744 39 H 0.041 0.959 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 3.841 15.723 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 N -0.308 5.308 4 C -0.036 4.036 5 H 0.064 0.936 6 C -0.132 4.132 7 C -0.136 4.136 8 H 0.092 0.908 9 C 0.058 3.942 10 H 0.112 0.888 11 C -0.239 4.239 12 O -0.379 6.379 13 C 0.029 3.971 14 N -0.324 5.324 15 C -0.345 4.345 16 H 0.065 0.935 17 C -0.232 4.232 18 N -0.612 5.612 19 Si 0.774 3.226 20 H -0.217 1.217 21 H -0.246 1.246 22 H -0.183 1.183 23 C 0.005 3.995 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.163 0.837 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.234 0.766 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.690 3.900 15.013 15.944 hybrid contribution 0.034 -1.241 -0.165 1.252 sum 3.724 2.659 14.849 15.538 Atomic orbital electron populations 1.21631 0.94286 1.01813 1.01733 1.21849 0.96469 0.89652 0.98981 1.60168 1.10151 1.14688 1.45830 1.21930 0.88265 0.97785 0.95635 0.93624 1.21504 0.99871 0.92635 0.99208 1.22099 1.01058 0.94972 0.95443 0.90822 1.21777 0.99497 0.92365 0.80552 0.88775 1.22479 1.01482 0.98524 1.01393 1.86507 1.30076 1.96828 1.24516 1.21063 0.96869 0.86698 0.92475 1.44114 1.59052 1.01081 1.28109 1.18739 1.11843 1.06141 0.97811 0.93461 1.25751 0.99972 1.00248 0.97214 1.69952 1.33423 1.31000 1.26786 0.85969 0.83002 0.79091 0.74510 1.21654 1.24625 1.18273 1.21407 0.95315 0.89413 0.93410 0.91186 0.94577 0.91412 0.94658 0.94053 0.83726 0.91719 0.90181 0.91289 0.91880 0.92178 0.76586 0.92598 0.95423 0.93529 0.94121 0.95538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 10.22 71.98 0.74 -3.21 16 2 C 0.06 1.90 6.17 86.30 0.53 2.44 16 3 N -0.68 -22.35 5.46 -491.16 -2.68 -25.04 16 4 C 0.08 2.50 2.85 45.00 0.13 2.63 16 5 H 0.05 1.40 7.84 -2.38 -0.02 1.38 16 6 C -0.09 -2.59 4.42 30.62 0.14 -2.46 16 7 C -0.12 -3.30 1.95 -10.72 -0.02 -3.32 16 8 H 0.07 2.28 7.33 -2.39 -0.02 2.26 16 9 C 0.12 2.71 3.17 30.60 0.10 2.81 16 10 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 11 C -0.18 -3.92 9.19 71.98 0.66 -3.26 16 12 O -0.57 -12.26 12.65 -148.98 -1.88 -14.14 16 13 C 0.15 5.72 5.27 86.36 0.46 6.17 16 14 N -0.60 -28.07 2.70 -699.11 -1.88 -29.96 16 15 C -0.22 -12.34 10.05 84.03 0.84 -11.49 16 16 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 17 C -0.04 -2.32 5.27 84.86 0.45 -1.87 16 18 N -0.96 -62.26 13.97 21.65 0.30 -61.96 16 19 Si 0.94 48.53 24.32 68.60 1.67 50.20 16 20 H -0.29 -14.41 6.73 99.48 0.67 -13.74 16 21 H -0.32 -16.63 7.11 99.48 0.71 -15.92 16 22 H -0.26 -12.56 6.28 99.48 0.62 -11.94 16 23 C 0.13 5.62 3.73 86.36 0.32 5.94 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.36 7.38 -2.39 -0.02 1.34 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.34 9.41 8.11 -89.70 -0.73 8.69 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.89 7.64 -2.39 -0.02 1.87 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.06 1.49 6.56 -2.39 -0.02 1.47 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.39 5.88 9.04 -74.06 -0.67 5.21 16 36 H 0.06 2.14 6.55 -2.39 -0.02 2.12 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 39 H 0.04 2.01 3.70 -2.39 -0.01 2.00 16 40 H 0.03 1.13 6.88 -2.38 -0.02 1.12 16 Total: -1.00 -68.89 302.18 -0.64 -69.53 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.49 Total: 16.99 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.34 Total: -5.62 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.27 Total: -116.95 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.88 Total: -14.14 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 1.67 Total: 50.20 kcal Total: -68.89 -0.64 -69.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108020113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.382 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds