Wall clock time and date at job start Mon Mar 30 2020 03:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.47026 * 2 1 4 4 C 1.47014 * 110.99985 * 46.36898 * 3 2 1 5 5 C 1.53099 * 109.25995 * 182.38969 * 4 3 2 6 6 O 1.43018 * 109.25626 * 303.14772 * 5 4 3 7 7 C 1.43023 * 113.73594 * 58.67049 * 6 5 4 8 8 H 1.09004 * 109.50604 * 61.26388 * 7 6 5 9 9 C 1.52993 * 109.50475 * 181.38906 * 7 6 5 10 10 N 1.46896 * 109.47686 * 299.78516 * 9 7 6 11 11 C 1.46897 * 111.00328 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47075 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47181 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99884 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00400 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00245 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47241 * 60.00315 * 17 15 13 19 19 H 1.48503 * 109.47172 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47195 * 300.00086 * 17 15 13 21 21 C 1.47016 * 110.99663 * 169.99881 * 3 2 1 22 22 H 1.09000 * 109.47362 * 299.99513 * 1 2 3 23 23 H 1.08998 * 109.47146 * 60.00091 * 1 2 3 24 24 H 1.09005 * 109.47268 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46703 * 240.00310 * 2 1 3 26 26 H 1.09000 * 109.47321 * 120.00672 * 2 1 3 27 27 H 1.08995 * 109.50517 * 302.32655 * 4 3 2 28 28 H 1.09004 * 109.50827 * 62.45421 * 4 3 2 29 29 H 1.08997 * 109.50235 * 63.08414 * 5 4 3 30 30 H 1.08994 * 109.50454 * 183.17230 * 5 4 3 31 31 H 1.09008 * 109.47149 * 59.78589 * 9 7 6 32 32 H 1.08999 * 109.47257 * 179.77983 * 9 7 6 33 33 H 1.00903 * 110.99966 * 56.04451 * 10 9 7 34 34 H 1.08997 * 109.47093 * 299.99609 * 11 10 9 35 35 H 1.08996 * 109.47519 * 59.99900 * 11 10 9 36 36 H 1.09000 * 109.47162 * 299.99646 * 12 11 10 37 37 H 1.08996 * 109.47191 * 60.00048 * 12 11 10 38 38 H 0.96998 * 119.99739 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.50444 * 57.67894 * 21 3 2 40 40 H 1.08997 * 109.51115 * 297.54199 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3024 2.1974 0.9934 5 6 1.8009 3.6430 0.9185 6 8 3.2164 3.6649 1.1215 7 6 3.9464 2.8843 0.1710 8 1 3.7752 3.2775 -0.8311 9 6 5.4398 2.9478 0.4973 10 7 5.8965 4.3424 0.4325 11 6 7.3294 4.4421 0.7402 12 6 7.7669 5.9062 0.6635 13 6 9.2371 6.0084 0.9786 14 1 9.8027 5.1181 1.2109 15 6 9.8601 7.2383 0.9705 16 7 9.1712 8.3225 0.6882 17 14 11.6822 7.3650 1.3618 18 1 12.4563 6.5644 0.3795 19 1 12.1069 8.7861 1.2872 20 1 11.9319 6.8455 2.7304 21 6 3.4696 1.4311 0.2384 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.2333 2.1696 0.7828 28 1 1.4878 1.7997 1.9912 29 1 1.5672 4.0581 -0.0618 30 1 1.3125 4.2368 1.6911 31 1 5.6096 2.5561 1.5003 32 1 5.9953 2.3496 -0.2250 33 1 5.3527 4.9299 1.0467 34 1 7.5126 4.0607 1.7448 35 1 7.8977 3.8544 0.0193 36 1 7.5837 6.2880 -0.3409 37 1 7.1987 6.4935 1.3848 38 1 9.6096 9.1877 0.6821 39 1 3.9825 0.8441 -0.5235 40 1 3.6897 1.0212 1.2241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123578778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:26 Heat of formation + Delta-G solvation = -73.229577 kcal Electronic energy + Delta-G solvation = -17541.160283 eV Core-core repulsion = 14775.452073 eV Total energy + Delta-G solvation = -2765.708209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79244 -37.78717 -36.89826 -35.10675 -33.20745 -31.76424 -30.90329 -28.43421 -26.38876 -25.03720 -24.09825 -22.51279 -21.98665 -21.23550 -18.50994 -17.56965 -17.50829 -16.86494 -16.45295 -16.20590 -16.11882 -15.65450 -15.18282 -15.08325 -14.55643 -14.29668 -14.08054 -13.78045 -13.29047 -13.04773 -12.89678 -12.82631 -12.57758 -12.48736 -12.29705 -12.22048 -11.93487 -11.79437 -11.58138 -11.37166 -11.18197 -10.58744 -10.55537 -9.40841 -9.29536 -8.19581 -6.31768 1.40635 1.44582 1.52501 2.41046 2.68325 2.82196 3.13452 3.33740 3.90389 3.96231 3.98995 4.10593 4.15594 4.25017 4.31683 4.46191 4.51467 4.52403 4.57935 4.60851 4.67251 4.68833 4.80525 4.88442 5.00750 5.02990 5.07175 5.10630 5.28008 5.44011 5.66854 5.77919 5.91400 5.99371 6.11968 6.21931 6.29846 6.51415 6.85349 7.37466 8.92695 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.069102 B = 0.003433 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.101259 B = 8154.296335 C = 8429.300806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 N -0.547 5.547 4 C 0.017 3.983 5 C 0.058 3.942 6 O -0.404 6.404 7 C 0.102 3.898 8 H 0.064 0.936 9 C 0.070 3.930 10 N -0.695 5.695 11 C 0.083 3.917 12 C 0.032 3.968 13 C -0.547 4.547 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.032 3.968 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.110 0.890 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.112 0.888 31 H 0.030 0.970 32 H 0.094 0.906 33 H 0.341 0.659 34 H 0.017 0.983 35 H 0.063 0.937 36 H -0.006 1.006 37 H -0.012 1.012 38 H 0.264 0.736 39 H 0.099 0.901 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 -17.275 -0.134 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.079 4.079 3 N -0.273 5.273 4 C -0.111 4.111 5 C -0.018 4.018 6 O -0.323 6.323 7 C 0.044 3.956 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.326 5.326 11 C -0.045 4.045 12 C -0.005 4.005 13 C -0.585 4.585 14 H 0.080 0.920 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.096 4.096 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.128 0.872 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.158 0.842 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.013 0.987 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.515 -16.825 -1.152 24.314 hybrid contribution 0.904 -0.102 1.701 1.929 sum -16.611 -16.927 0.549 23.722 Atomic orbital electron populations 1.21904 0.93622 1.02920 1.02493 1.22198 0.96906 0.87660 1.01181 1.62306 1.03370 1.12410 1.49225 1.22903 1.00603 0.93933 0.93644 1.22831 0.80377 0.96079 1.02562 1.87959 1.19274 1.70790 1.54279 1.22121 0.90529 0.90254 0.92692 0.91804 1.21979 0.93186 0.90425 1.00377 1.60471 1.04081 1.08735 1.59311 1.21803 0.87366 0.97967 0.97405 1.18912 0.94815 0.91726 0.95095 1.21599 0.95687 0.93585 1.47651 0.91967 1.26024 1.03633 0.95357 0.94887 1.70114 1.38367 0.98931 1.49855 0.85433 0.78778 0.77206 0.79198 1.18983 1.20759 1.19125 1.22663 0.89193 0.96673 1.01112 0.92132 0.91921 0.90715 0.89979 0.94860 0.87243 0.94538 0.92532 0.87049 0.95144 0.88733 0.84165 0.96485 0.91836 0.98720 0.99376 0.92698 0.88319 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.18 71.98 0.66 -1.03 16 2 C 0.05 0.70 6.00 86.30 0.52 1.22 16 3 N -0.55 -10.51 4.88 -895.21 -4.37 -14.88 16 4 C 0.02 0.30 4.94 86.31 0.43 0.73 16 5 C 0.06 1.24 7.01 72.02 0.50 1.74 16 6 O -0.40 -11.59 9.81 -148.98 -1.46 -13.05 16 7 C 0.10 2.73 3.08 30.62 0.09 2.83 16 8 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 9 C 0.07 2.10 5.42 86.30 0.47 2.57 16 10 N -0.69 -26.89 6.50 -513.91 -3.34 -30.23 16 11 C 0.08 3.70 5.62 86.31 0.49 4.18 16 12 C 0.03 1.79 5.23 29.85 0.16 1.94 16 13 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 16 N -0.93 -58.42 13.29 21.45 0.28 -58.14 16 17 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.03 0.69 4.91 86.31 0.42 1.11 16 22 H 0.06 0.64 6.28 -2.39 -0.01 0.63 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 24 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.03 0.49 8.08 -2.39 -0.02 0.47 16 27 H 0.11 1.50 6.05 -2.39 -0.01 1.48 16 28 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.34 13.67 8.13 -89.69 -0.73 12.94 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 36 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.39 318.01 -2.17 -69.55 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.26 Total: 15.92 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 4.43 Total: -16.24 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -7.42 Total: -103.25 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.46 Total: -13.05 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.39 -2.17 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123578778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.678 kcal (2) G-P(sol) polarization free energy of solvation -67.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds