Wall clock time and date at job start Mon Mar 30 2020 04:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99767 * 2 1 4 4 C 1.53001 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.50412 * 305.08451 * 4 3 2 6 6 C 1.53097 * 109.50446 * 185.00030 * 4 3 2 7 7 N 1.47016 * 109.25580 * 183.21355 * 6 4 3 8 8 C 1.46898 * 110.99994 * 182.38964 * 7 6 4 9 9 C 1.53006 * 109.46953 * 169.99953 * 8 7 6 10 10 C 1.52998 * 109.47044 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47054 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00321 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00359 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47246 * 59.99426 * 15 13 11 17 17 H 1.48496 * 109.47352 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46849 * 299.99698 * 15 13 11 19 19 C 1.47015 * 110.75095 * 58.61926 * 7 6 4 20 20 C 1.53098 * 109.25723 * 301.38182 * 19 7 6 21 21 O 1.43014 * 109.50279 * 65.21838 * 4 3 2 22 22 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47540 * 299.99901 * 1 2 3 24 24 H 1.09003 * 109.47118 * 60.00236 * 1 2 3 25 25 H 1.00894 * 110.99919 * 123.94949 * 2 1 3 26 26 H 1.09004 * 109.46924 * 59.99642 * 3 2 1 27 27 H 1.09002 * 109.47195 * 300.00217 * 3 2 1 28 28 H 1.09000 * 109.50984 * 63.28479 * 6 4 3 29 29 H 1.08996 * 109.54131 * 303.17185 * 6 4 3 30 30 H 1.08994 * 109.47795 * 290.00356 * 8 7 6 31 31 H 1.08996 * 109.47199 * 50.00736 * 8 7 6 32 32 H 1.08994 * 109.47199 * 300.00767 * 9 8 7 33 33 H 1.09009 * 109.46751 * 60.00423 * 9 8 7 34 34 H 1.08994 * 109.47742 * 300.00426 * 10 9 8 35 35 H 1.09000 * 109.46878 * 60.00356 * 10 9 8 36 36 H 0.96997 * 119.99748 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.50673 * 61.31448 * 19 7 6 38 38 H 1.09004 * 109.50788 * 181.44864 * 19 7 6 39 39 H 1.08997 * 109.51060 * 296.91507 * 20 19 7 40 40 H 1.09000 * 109.51173 * 176.78603 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 0.0006 5 1 3.8726 0.7308 0.8416 6 6 4.0740 2.7543 0.1264 7 7 5.5417 2.7163 0.0490 8 6 6.1129 4.0585 0.2226 9 6 7.6303 3.9498 0.3857 10 6 8.2252 5.3477 0.5671 11 6 9.7198 5.2407 0.7272 12 1 10.1977 4.2725 0.7017 13 6 10.4772 6.3788 0.9062 14 7 9.8954 7.5578 0.9368 15 14 12.3300 6.2462 1.1040 16 1 12.9131 5.6140 -0.1066 17 1 12.9074 7.6030 1.2801 18 1 12.6425 5.4163 2.2952 19 6 5.9811 2.1168 -1.2193 20 6 5.4127 0.6996 -1.3316 21 8 3.9876 0.7529 -1.2230 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8306 -0.5260 0.7814 26 1 1.6458 1.8948 0.8900 27 1 1.6458 1.8948 -0.8900 28 1 3.7710 3.1781 1.0838 29 1 3.6826 3.3690 -0.6840 30 1 5.8842 4.6667 -0.6525 31 1 5.6845 4.5237 1.1103 32 1 7.8590 3.3416 1.2608 33 1 8.0588 3.4846 -0.5021 34 1 7.9965 5.9563 -0.3077 35 1 7.7967 5.8125 1.4551 36 1 10.4283 8.3585 1.0624 37 1 5.6200 2.7207 -2.0518 38 1 7.0700 2.0752 -1.2443 39 1 5.8159 0.0811 -0.5299 40 1 5.6885 0.2721 -2.2957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126385989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:10 Heat of formation + Delta-G solvation = -51.989062 kcal Electronic energy + Delta-G solvation = -17596.928970 eV Core-core repulsion = 14832.141819 eV Total energy + Delta-G solvation = -2764.787152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67014 -36.59258 -35.69724 -33.53486 -31.84633 -31.24216 -28.38446 -26.96905 -25.05639 -23.85012 -23.00602 -21.73569 -20.35486 -19.85748 -16.89427 -16.47761 -15.96737 -15.53958 -15.22497 -14.97684 -14.79989 -14.43955 -13.97268 -13.77126 -13.69242 -13.27403 -12.44483 -12.27416 -12.17118 -11.89745 -11.72426 -11.52867 -11.24560 -11.17407 -10.81723 -10.60139 -10.48832 -10.41272 -9.63219 -9.58540 -9.29952 -9.04117 -8.68744 -8.33762 -8.15935 -5.99206 -4.01424 3.34022 3.38133 3.40817 3.69229 3.81206 4.16545 4.47284 4.82675 4.90519 5.04711 5.07602 5.14973 5.17508 5.29596 5.31415 5.36509 5.44293 5.52957 5.59951 5.61133 5.74808 5.86455 5.92686 5.97315 6.07492 6.28544 6.66065 6.67256 6.73763 7.06345 7.08519 7.21400 7.30559 7.31314 7.68256 7.83124 8.00996 8.44181 9.05548 9.62513 11.12267 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059593 B = 0.003606 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.743329 B = 7762.452415 C = 8043.439551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.066 3.934 4 C 0.098 3.902 5 H 0.064 0.936 6 C 0.023 3.977 7 N -0.537 5.537 8 C 0.056 3.944 9 C -0.104 4.104 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.014 3.986 20 C 0.064 3.936 21 O -0.369 6.369 22 H 0.067 0.933 23 H 0.020 0.980 24 H 0.064 0.936 25 H 0.341 0.659 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.039 0.961 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.007 -13.128 -1.932 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.317 5.317 3 C -0.064 4.064 4 C 0.040 3.960 5 H 0.082 0.918 6 C -0.106 4.106 7 N -0.261 5.261 8 C -0.071 4.071 9 C -0.142 4.142 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.114 4.114 20 C -0.013 4.013 21 O -0.288 6.288 22 H 0.086 0.914 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.886 -13.364 -2.361 20.893 hybrid contribution 0.777 1.061 0.583 1.438 sum -15.109 -12.303 -1.779 19.566 Atomic orbital electron populations 1.22196 0.87783 1.01869 1.00325 1.60281 1.07469 1.13882 1.50102 1.21984 0.92868 0.90155 1.01370 1.22085 0.92973 0.92960 0.88022 0.91797 1.22721 0.89301 0.96765 1.01818 1.62291 1.06735 1.23592 1.33516 1.22325 0.97752 0.86836 1.00165 1.21653 0.90849 1.01029 1.00686 1.19064 0.95270 0.90243 0.96953 1.21213 0.92433 0.92760 1.49364 0.92719 1.25032 0.98612 0.95436 0.95429 1.69957 1.35656 0.97679 1.50352 0.86650 0.85580 0.77033 0.78692 1.20254 1.21309 1.20212 1.22847 1.02013 0.95844 0.90699 1.22668 0.80986 0.95618 1.02039 1.88049 1.20856 1.81897 1.37954 0.91409 0.96178 0.91693 0.84169 0.93638 0.90153 0.89978 0.94174 0.95173 0.91128 0.92576 0.93444 0.96838 0.96624 0.92971 0.94254 0.88898 0.92505 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.70 60.06 0.64 0.85 16 2 N -0.69 -6.61 6.81 -121.13 -0.82 -7.44 16 3 C 0.07 0.66 5.35 -3.82 -0.02 0.64 16 4 C 0.10 1.17 2.98 -26.68 -0.08 1.09 16 5 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 6 C 0.02 0.30 4.93 -3.71 -0.02 0.28 16 7 N -0.54 -8.26 4.73 -234.31 -1.11 -9.36 16 8 C 0.06 0.99 4.96 -3.82 -0.02 0.97 16 9 C -0.10 -2.18 5.09 -26.73 -0.14 -2.32 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 20 C 0.06 0.80 7.01 37.21 0.26 1.06 16 21 O -0.37 -5.03 10.42 -35.23 -0.37 -5.40 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.02 0.14 8.14 -51.93 -0.42 -0.29 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.34 2.89 8.81 -39.29 -0.35 2.54 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.97 6.52 -51.92 -0.34 0.64 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.37 6.38 -51.93 -0.33 1.03 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -31.18 319.95 -9.01 -40.19 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.31 Total: -2.68 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.47 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -1.20 Total: -43.28 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.37 Total: -5.40 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.18 -9.01 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126385989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.797 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds