Wall clock time and date at job start Mon Mar 30 2020 04:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99767 * 2 1 4 4 C 1.53001 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.50412 * 305.08451 * 4 3 2 6 6 C 1.53097 * 109.50446 * 185.00030 * 4 3 2 7 7 N 1.47016 * 109.25580 * 183.21355 * 6 4 3 8 8 C 1.46898 * 110.99994 * 182.38964 * 7 6 4 9 9 C 1.53006 * 109.46953 * 169.99953 * 8 7 6 10 10 C 1.52998 * 109.47044 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47054 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00321 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00161 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99902 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00359 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47246 * 59.99426 * 15 13 11 17 17 H 1.48496 * 109.47352 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46849 * 299.99698 * 15 13 11 19 19 C 1.47015 * 110.75095 * 58.61926 * 7 6 4 20 20 C 1.53098 * 109.25723 * 301.38182 * 19 7 6 21 21 O 1.43014 * 109.50279 * 65.21838 * 4 3 2 22 22 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47540 * 299.99901 * 1 2 3 24 24 H 1.09003 * 109.47118 * 60.00236 * 1 2 3 25 25 H 1.00894 * 110.99919 * 123.94949 * 2 1 3 26 26 H 1.09004 * 109.46924 * 59.99642 * 3 2 1 27 27 H 1.09002 * 109.47195 * 300.00217 * 3 2 1 28 28 H 1.09000 * 109.50984 * 63.28479 * 6 4 3 29 29 H 1.08996 * 109.54131 * 303.17185 * 6 4 3 30 30 H 1.08994 * 109.47795 * 290.00356 * 8 7 6 31 31 H 1.08996 * 109.47199 * 50.00736 * 8 7 6 32 32 H 1.08994 * 109.47199 * 300.00767 * 9 8 7 33 33 H 1.09009 * 109.46751 * 60.00423 * 9 8 7 34 34 H 1.08994 * 109.47742 * 300.00426 * 10 9 8 35 35 H 1.09000 * 109.46878 * 60.00356 * 10 9 8 36 36 H 0.96997 * 119.99748 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.50673 * 61.31448 * 19 7 6 38 38 H 1.09004 * 109.50788 * 181.44864 * 19 7 6 39 39 H 1.08997 * 109.51060 * 296.91507 * 20 19 7 40 40 H 1.09000 * 109.51173 * 176.78603 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3307 0.0006 5 1 3.8726 0.7308 0.8416 6 6 4.0740 2.7543 0.1264 7 7 5.5417 2.7163 0.0490 8 6 6.1129 4.0585 0.2226 9 6 7.6303 3.9498 0.3857 10 6 8.2252 5.3477 0.5671 11 6 9.7198 5.2407 0.7272 12 1 10.1977 4.2725 0.7017 13 6 10.4772 6.3788 0.9062 14 7 9.8954 7.5578 0.9368 15 14 12.3300 6.2462 1.1040 16 1 12.9131 5.6140 -0.1066 17 1 12.9074 7.6030 1.2801 18 1 12.6425 5.4163 2.2952 19 6 5.9811 2.1168 -1.2193 20 6 5.4127 0.6996 -1.3316 21 8 3.9876 0.7529 -1.2230 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8306 -0.5260 0.7814 26 1 1.6458 1.8948 0.8900 27 1 1.6458 1.8948 -0.8900 28 1 3.7710 3.1781 1.0838 29 1 3.6826 3.3690 -0.6840 30 1 5.8842 4.6667 -0.6525 31 1 5.6845 4.5237 1.1103 32 1 7.8590 3.3416 1.2608 33 1 8.0588 3.4846 -0.5021 34 1 7.9965 5.9563 -0.3077 35 1 7.7967 5.8125 1.4551 36 1 10.4283 8.3585 1.0624 37 1 5.6200 2.7207 -2.0518 38 1 7.0700 2.0752 -1.2443 39 1 5.8159 0.0811 -0.5299 40 1 5.6885 0.2721 -2.2957 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126385989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:09 Heat of formation + Delta-G solvation = -75.133925 kcal Electronic energy + Delta-G solvation = -17597.932607 eV Core-core repulsion = 14832.141819 eV Total energy + Delta-G solvation = -2765.790788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73780 -37.71258 -36.67095 -35.47276 -33.31734 -32.58483 -29.68963 -28.29772 -26.44284 -24.79187 -24.40995 -22.99302 -21.65346 -21.31721 -18.51512 -17.77466 -17.25555 -16.58538 -16.47690 -16.34858 -16.00180 -15.71853 -15.14034 -14.98380 -14.71187 -14.41465 -14.21802 -13.66041 -13.23508 -13.17629 -12.94847 -12.74929 -12.65503 -12.52899 -12.46630 -12.22865 -12.01765 -11.59918 -11.39979 -11.34486 -11.13137 -10.56429 -10.50946 -9.41559 -9.35530 -8.20863 -6.32075 1.39786 1.42987 1.50946 2.40261 2.68566 2.83990 3.12260 3.29455 3.92421 3.94383 4.02878 4.09037 4.14506 4.29504 4.29925 4.44170 4.55449 4.57734 4.62329 4.65115 4.68368 4.68976 4.80465 4.92717 4.95827 5.03943 5.05663 5.07185 5.23512 5.50330 5.71642 5.84388 5.93560 5.98099 6.02564 6.25462 6.27346 6.46889 6.84594 7.37236 8.90967 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059593 B = 0.003606 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.743329 B = 7762.452415 C = 8043.439551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.702 5.702 3 C 0.072 3.928 4 C 0.102 3.898 5 H 0.066 0.934 6 C 0.023 3.977 7 N -0.541 5.541 8 C 0.068 3.932 9 C -0.088 4.088 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.060 0.940 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.013 3.987 20 C 0.069 3.931 21 O -0.382 6.382 22 H 0.077 0.923 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.347 0.653 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.050 0.950 34 H -0.011 1.011 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.033 0.967 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 -14.503 -1.734 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.333 5.333 3 C -0.058 4.058 4 C 0.043 3.957 5 H 0.084 0.916 6 C -0.106 4.106 7 N -0.266 5.266 8 C -0.060 4.060 9 C -0.126 4.126 10 C -0.011 4.011 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.115 4.115 20 C -0.008 4.008 21 O -0.301 6.301 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.007 0.993 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.947 -14.761 -2.164 21.838 hybrid contribution 0.741 1.488 0.516 1.741 sum -15.206 -13.273 -1.648 20.251 Atomic orbital electron populations 1.22222 0.86582 1.02668 1.00594 1.60263 1.08715 1.13644 1.50715 1.21905 0.91418 0.90702 1.01763 1.22146 0.94163 0.91838 0.87541 0.91561 1.22806 0.87561 0.97854 1.02337 1.62239 1.08348 1.21747 1.34258 1.22051 0.95613 0.88327 1.00008 1.21385 0.93023 0.97560 1.00642 1.18959 0.94770 0.92716 0.94677 1.21666 0.93847 0.93197 1.49493 0.92201 1.25999 1.04104 0.94960 0.94825 1.70092 1.37757 0.98515 1.51092 0.85493 0.78966 0.77344 0.79212 1.19145 1.20789 1.19101 1.22896 1.01748 0.96954 0.89933 1.22710 0.80533 0.94271 1.03313 1.88043 1.21293 1.81967 1.38824 0.90396 0.95210 0.92057 0.83513 0.92010 0.90941 0.88805 0.94543 0.95842 0.90960 0.92779 0.93105 0.99278 0.98916 0.92739 0.94894 0.89527 0.92124 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.74 16 2 N -0.70 -12.21 6.81 -537.13 -3.66 -15.87 16 3 C 0.07 1.31 5.35 86.30 0.46 1.77 16 4 C 0.10 2.24 2.98 30.63 0.09 2.34 16 5 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 6 C 0.02 0.57 4.93 86.31 0.43 1.00 16 7 N -0.54 -16.16 4.73 -895.22 -4.23 -20.39 16 8 C 0.07 2.38 4.96 86.31 0.43 2.81 16 9 C -0.09 -3.71 5.09 30.60 0.16 -3.55 16 10 C 0.03 1.42 4.97 29.85 0.15 1.56 16 11 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 15 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 C 0.01 0.36 5.44 86.31 0.47 0.82 16 20 C 0.07 1.60 7.01 72.01 0.50 2.11 16 21 O -0.38 -9.81 10.42 -148.98 -1.55 -11.36 16 22 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.35 5.21 8.81 -89.70 -0.79 4.42 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 2.09 8.09 -2.39 -0.02 2.07 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 31 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 2.08 6.52 -2.38 -0.02 2.07 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 2.49 6.38 -2.38 -0.02 2.47 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -66.03 319.95 -2.19 -68.22 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.20 Total: 10.21 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.75 Total: -20.23 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -7.60 Total: -93.45 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -1.55 Total: -11.36 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.03 -2.19 -68.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126385989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.912 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds