Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00320 * 2 1 4 4 C 1.53000 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46849 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47164 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47511 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99844 * 294.29832 * 7 6 5 9 9 C 1.53239 * 109.33755 * 172.74586 * 8 7 6 10 10 N 1.47073 * 108.52521 * 53.83254 * 9 8 7 11 11 C 1.36937 * 120.88523 * 128.83353 * 10 9 8 12 12 H 1.07994 * 120.00186 * 206.57069 * 11 10 9 13 13 C 1.38808 * 119.99651 * 26.56480 * 11 10 9 14 14 N 1.31622 * 119.99975 * 17.02270 * 13 11 10 15 15 Si 1.86801 * 119.99897 * 197.01506 * 13 11 10 16 16 H 1.48499 * 109.46984 * 60.00739 * 15 13 11 17 17 H 1.48506 * 109.47026 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47470 * 300.00181 * 15 13 11 19 19 C 1.47083 * 118.23297 * 308.81899 * 10 9 8 20 20 C 1.46904 * 110.99934 * 169.99982 * 7 6 5 21 21 H 1.09000 * 109.46890 * 300.00235 * 1 2 3 22 22 H 1.09001 * 109.46644 * 60.00203 * 1 2 3 23 23 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47189 * 59.99891 * 3 2 1 25 25 H 1.09004 * 109.46827 * 300.00166 * 3 2 1 26 26 H 1.08997 * 109.46923 * 300.00234 * 4 3 2 27 27 H 1.09001 * 109.47082 * 60.00472 * 4 3 2 28 28 H 1.09002 * 109.47137 * 299.99641 * 5 4 3 29 29 H 1.09000 * 109.47349 * 60.00077 * 5 4 3 30 30 H 1.08999 * 109.47088 * 300.00339 * 6 5 4 31 31 H 1.09000 * 109.47100 * 59.99709 * 6 5 4 32 32 H 1.08998 * 109.49492 * 292.70625 * 8 7 6 33 33 H 1.09001 * 109.49023 * 52.78986 * 8 7 6 34 34 H 1.09005 * 109.62680 * 294.11833 * 9 8 7 35 35 H 1.09006 * 109.62580 * 173.54372 * 9 8 7 36 36 H 0.97007 * 119.99426 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.62374 * 291.46682 * 19 10 9 38 38 H 1.09007 * 109.78842 * 170.98843 * 19 10 9 39 39 H 1.08994 * 109.49162 * 307.21083 * 20 7 6 40 40 H 1.08997 * 109.49394 * 67.29421 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1579 2.5822 0.0013 6 6 5.6831 2.4614 0.0013 7 7 6.2806 3.8034 0.0013 8 6 5.9793 4.5138 -1.2487 9 6 6.4611 5.9642 -1.1368 10 7 7.8807 5.9566 -0.7526 11 6 8.8043 6.6786 -1.4604 12 1 9.8378 6.3654 -1.4761 13 6 8.4122 7.8129 -2.1578 14 7 7.2603 8.3881 -1.8844 15 14 9.5192 8.5230 -3.4843 16 1 9.7353 7.5066 -4.5451 17 1 8.8770 9.7254 -4.0736 18 1 10.8255 8.9021 -2.8883 19 6 8.2821 5.1533 0.4122 20 6 7.7286 3.7349 0.2394 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.6887 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8568 0.6437 0.8908 27 1 3.8575 0.6435 -0.8892 28 1 3.8367 3.1234 -0.8887 29 1 3.8359 3.1229 0.8913 30 1 6.0047 1.9201 0.8910 31 1 6.0047 1.9209 -0.8889 32 1 6.4898 4.0238 -2.0777 33 1 4.9036 4.5004 -1.4243 34 1 5.8789 6.4859 -0.3772 35 1 6.3447 6.4638 -2.0986 36 1 6.9865 9.1810 -2.3716 37 1 7.8750 5.5971 1.3208 38 1 9.3695 5.1165 0.4782 39 1 7.9216 3.1566 1.1429 40 1 8.2148 3.2557 -0.6104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135451144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = -26.716177 kcal Electronic energy + Delta-G solvation = -17735.850601 eV Core-core repulsion = 14972.159364 eV Total energy + Delta-G solvation = -2763.691237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.42500 -37.93321 -35.20609 -33.35267 -31.18017 -29.87787 -28.62679 -26.71599 -25.42855 -23.28094 -22.62818 -21.84734 -20.63837 -19.04437 -16.75952 -16.46918 -16.38913 -15.44158 -15.02384 -14.83819 -14.39416 -14.10586 -13.71863 -13.41337 -13.14377 -13.04785 -12.46484 -12.22533 -11.82652 -11.52093 -11.44197 -11.20526 -11.07815 -10.90860 -10.71500 -10.60412 -10.36090 -10.22662 -9.98971 -9.85406 -9.68881 -9.53243 -8.47480 -7.75340 -6.63174 -5.75286 -3.16174 3.40048 3.45547 3.46910 3.54007 4.45744 4.53719 4.84993 4.90429 5.09847 5.12006 5.25592 5.28571 5.38226 5.41229 5.45223 5.50445 5.64035 5.76188 5.85833 5.91887 5.98076 6.01786 6.20012 6.26508 6.29379 6.38832 6.41874 6.60464 6.74678 6.96329 6.97777 7.29562 7.67225 7.70077 7.75672 7.86096 8.46608 9.24362 9.87958 10.46799 11.33514 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042538 B = 0.004051 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.079765 B = 6909.682228 C = 7311.750519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.396 6.396 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.057 3.943 7 N -0.534 5.534 8 C 0.033 3.967 9 C 0.178 3.822 10 N -0.596 5.596 11 C -0.252 4.252 12 H 0.065 0.935 13 C 0.000 4.000 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.149 3.851 20 C 0.045 3.955 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.087 0.913 36 H 0.254 0.746 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 -13.626 3.477 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.016 4.016 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.072 4.072 7 N -0.259 5.259 8 C -0.096 4.096 9 C 0.052 3.948 10 N -0.319 5.319 11 C -0.381 4.381 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.549 5.549 15 Si 0.733 3.267 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.022 3.978 20 C -0.085 4.085 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.860 -13.344 3.782 17.017 hybrid contribution 0.608 0.173 -1.368 1.507 sum -9.252 -13.171 2.413 16.276 Atomic orbital electron populations 1.22722 0.81232 1.02545 0.99994 1.87862 1.19576 1.28575 1.95452 1.22598 0.94416 0.84232 1.00323 1.21483 0.92634 0.98159 1.03101 1.21506 0.95143 0.95385 1.03089 1.22044 0.94137 0.91008 0.99997 1.61956 1.12149 1.15528 1.36285 1.22944 0.99109 0.98768 0.88798 1.20860 0.83811 0.89219 1.00896 1.44118 1.04570 1.53780 1.29468 1.19161 0.91121 1.03717 1.24138 0.91721 1.25020 0.97614 0.95856 1.01302 1.70030 1.22463 1.20726 1.41639 0.86361 0.80021 0.78166 0.82168 1.21134 1.21618 1.20913 1.20969 0.96932 0.89047 0.90839 1.22603 0.87269 0.99773 0.98843 0.94120 0.94110 0.89807 0.93186 0.93248 0.91224 0.91386 0.91588 0.90967 0.91483 0.95639 0.95870 0.91944 0.95642 0.89459 0.93610 0.95721 0.92700 0.92105 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.40 -4.54 10.70 -35.23 -0.38 -4.91 16 3 C 0.06 0.64 5.94 37.16 0.22 0.86 16 4 C -0.12 -1.28 5.58 -26.73 -0.15 -1.43 16 5 C -0.11 -1.43 5.15 -26.73 -0.14 -1.57 16 6 C 0.06 0.82 4.96 -3.83 -0.02 0.80 16 7 N -0.53 -9.78 4.63 -234.33 -1.08 -10.87 16 8 C 0.03 0.66 5.46 -3.70 -0.02 0.64 16 9 C 0.18 4.40 5.42 -3.61 -0.02 4.38 16 10 N -0.60 -15.51 3.04 -172.02 -0.52 -16.03 16 11 C -0.25 -7.07 9.63 -15.06 -0.15 -7.21 16 12 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 13 C 0.00 0.01 4.94 -17.43 -0.09 -0.07 16 14 N -0.90 -26.57 11.15 55.49 0.62 -25.96 16 15 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 20 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 21 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.87 6.40 -51.93 -0.33 0.54 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 31 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 1.12 6.16 -51.93 -0.32 0.80 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 2.37 6.12 -51.93 -0.32 2.05 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.15 7.96 -51.93 -0.41 0.74 16 39 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -30.53 315.44 -8.19 -38.71 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -7.26 Total: -4.42 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 0.71 Total: 1.82 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.99 Total: -52.85 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.53 -8.19 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135451144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.996 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds