Wall clock time and date at job start Mon Mar 30 2020 04:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00320 * 2 1 4 4 C 1.53000 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46849 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47164 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47511 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99844 * 294.29832 * 7 6 5 9 9 C 1.53239 * 109.33755 * 172.74586 * 8 7 6 10 10 N 1.47073 * 108.52521 * 53.83254 * 9 8 7 11 11 C 1.36937 * 120.88523 * 128.83353 * 10 9 8 12 12 H 1.07994 * 120.00186 * 206.57069 * 11 10 9 13 13 C 1.38808 * 119.99651 * 26.56480 * 11 10 9 14 14 N 1.31622 * 119.99975 * 17.02270 * 13 11 10 15 15 Si 1.86801 * 119.99897 * 197.01506 * 13 11 10 16 16 H 1.48499 * 109.46984 * 60.00739 * 15 13 11 17 17 H 1.48506 * 109.47026 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47470 * 300.00181 * 15 13 11 19 19 C 1.47083 * 118.23297 * 308.81899 * 10 9 8 20 20 C 1.46904 * 110.99934 * 169.99982 * 7 6 5 21 21 H 1.09000 * 109.46890 * 300.00235 * 1 2 3 22 22 H 1.09001 * 109.46644 * 60.00203 * 1 2 3 23 23 H 1.08997 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47189 * 59.99891 * 3 2 1 25 25 H 1.09004 * 109.46827 * 300.00166 * 3 2 1 26 26 H 1.08997 * 109.46923 * 300.00234 * 4 3 2 27 27 H 1.09001 * 109.47082 * 60.00472 * 4 3 2 28 28 H 1.09002 * 109.47137 * 299.99641 * 5 4 3 29 29 H 1.09000 * 109.47349 * 60.00077 * 5 4 3 30 30 H 1.08999 * 109.47088 * 300.00339 * 6 5 4 31 31 H 1.09000 * 109.47100 * 59.99709 * 6 5 4 32 32 H 1.08998 * 109.49492 * 292.70625 * 8 7 6 33 33 H 1.09001 * 109.49023 * 52.78986 * 8 7 6 34 34 H 1.09005 * 109.62680 * 294.11833 * 9 8 7 35 35 H 1.09006 * 109.62580 * 173.54372 * 9 8 7 36 36 H 0.97007 * 119.99426 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.62374 * 291.46682 * 19 10 9 38 38 H 1.09007 * 109.78842 * 170.98843 * 19 10 9 39 39 H 1.08994 * 109.49162 * 307.21083 * 20 7 6 40 40 H 1.08997 * 109.49394 * 67.29421 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1579 2.5822 0.0013 6 6 5.6831 2.4614 0.0013 7 7 6.2806 3.8034 0.0013 8 6 5.9793 4.5138 -1.2487 9 6 6.4611 5.9642 -1.1368 10 7 7.8807 5.9566 -0.7526 11 6 8.8043 6.6786 -1.4604 12 1 9.8378 6.3654 -1.4761 13 6 8.4122 7.8129 -2.1578 14 7 7.2603 8.3881 -1.8844 15 14 9.5192 8.5230 -3.4843 16 1 9.7353 7.5066 -4.5451 17 1 8.8770 9.7254 -4.0736 18 1 10.8255 8.9021 -2.8883 19 6 8.2821 5.1533 0.4122 20 6 7.7286 3.7349 0.2394 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.6887 1.8464 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 3.8568 0.6437 0.8908 27 1 3.8575 0.6435 -0.8892 28 1 3.8367 3.1234 -0.8887 29 1 3.8359 3.1229 0.8913 30 1 6.0047 1.9201 0.8910 31 1 6.0047 1.9209 -0.8889 32 1 6.4898 4.0238 -2.0777 33 1 4.9036 4.5004 -1.4243 34 1 5.8789 6.4859 -0.3772 35 1 6.3447 6.4638 -2.0986 36 1 6.9865 9.1810 -2.3716 37 1 7.8750 5.5971 1.3208 38 1 9.3695 5.1165 0.4782 39 1 7.9216 3.1566 1.1429 40 1 8.2148 3.2557 -0.6104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135451144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:25 Heat of formation + Delta-G solvation = -47.053552 kcal Electronic energy + Delta-G solvation = -17736.732495 eV Core-core repulsion = 14972.159364 eV Total energy + Delta-G solvation = -2764.573132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83175 -38.88548 -36.73633 -34.77505 -32.99633 -31.63745 -29.86790 -27.93584 -26.67076 -24.90725 -24.29303 -23.07822 -21.75711 -20.81509 -18.72377 -17.25218 -17.22968 -17.01691 -16.38154 -16.07005 -15.76951 -15.44550 -15.30864 -15.20476 -14.85847 -14.51438 -13.63114 -13.38824 -13.17595 -12.95912 -12.69278 -12.60189 -12.53963 -12.34872 -12.16360 -12.03080 -11.93958 -11.84131 -11.64401 -11.46603 -11.19882 -10.60623 -10.58413 -9.24864 -8.68455 -7.88000 -5.32830 1.46269 1.48751 1.55852 2.50546 2.73116 3.13552 3.27481 3.68448 3.94723 4.03463 4.24025 4.29237 4.35459 4.40542 4.42746 4.53155 4.55847 4.59167 4.64967 4.68604 4.74704 4.79641 4.85750 4.88780 4.89362 5.01607 5.06099 5.21549 5.32396 5.38129 5.41275 5.60199 5.67588 6.20319 6.24333 6.31956 6.37349 7.12746 7.83508 8.38003 9.18742 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042538 B = 0.004051 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.079765 B = 6909.682228 C = 7311.750519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.107 4.107 5 C -0.105 4.105 6 C 0.058 3.942 7 N -0.544 5.544 8 C 0.050 3.950 9 C 0.185 3.815 10 N -0.616 5.616 11 C -0.267 4.267 12 H 0.067 0.933 13 C -0.052 4.052 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.279 1.279 17 H -0.292 1.292 18 H -0.275 1.275 19 C 0.143 3.857 20 C 0.054 3.946 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.015 0.985 33 H 0.083 0.917 34 H -0.002 1.002 35 H 0.056 0.944 36 H 0.251 0.749 37 H 0.016 0.984 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.827 -15.235 3.655 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.069 4.069 7 N -0.269 5.269 8 C -0.079 4.079 9 C 0.059 3.941 10 N -0.340 5.340 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.247 4.247 14 N -0.581 5.581 15 Si 0.798 3.202 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.200 1.200 19 C 0.018 3.982 20 C -0.075 4.075 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.101 0.899 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.967 -14.989 3.978 18.434 hybrid contribution 0.617 0.647 -1.348 1.617 sum -9.350 -14.342 2.630 17.321 Atomic orbital electron populations 1.22919 0.79652 1.03779 1.00768 1.87818 1.21400 1.28963 1.95612 1.22594 0.94045 0.84210 1.00818 1.21368 0.93027 0.96916 1.03228 1.21410 0.93900 0.96361 1.02666 1.22135 0.95015 0.88789 1.00982 1.61914 1.12144 1.17892 1.34913 1.22611 1.00014 0.95744 0.89556 1.20624 0.83420 0.91820 0.98187 1.44420 1.04673 1.54144 1.30794 1.19514 0.91720 1.03973 1.24519 0.91509 1.25819 0.99158 0.96405 1.03364 1.70193 1.24220 1.21095 1.42637 0.85298 0.78331 0.77188 0.79360 1.20489 1.21840 1.20043 1.21131 0.97544 0.90497 0.89048 1.22466 0.87304 0.97476 1.00239 0.93230 0.93442 0.88455 0.92510 0.92988 0.90738 0.91584 0.92278 0.91118 0.89590 0.95421 0.96706 0.89868 0.98369 0.92587 0.94025 0.96613 0.92143 0.88662 0.96049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.83 10.70 -148.98 -1.59 -10.42 16 3 C 0.06 1.14 5.94 71.98 0.43 1.57 16 4 C -0.11 -2.12 5.58 30.59 0.17 -1.95 16 5 C -0.11 -2.43 5.15 30.59 0.16 -2.27 16 6 C 0.06 1.54 4.96 86.30 0.43 1.97 16 7 N -0.54 -18.94 4.63 -895.28 -4.15 -23.09 16 8 C 0.05 1.98 5.46 86.38 0.47 2.45 16 9 C 0.19 9.38 5.42 86.35 0.47 9.85 16 10 N -0.62 -32.46 3.04 -698.13 -2.12 -34.58 16 11 C -0.27 -15.17 9.63 84.03 0.81 -14.36 16 12 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 13 C -0.05 -2.98 4.94 84.86 0.42 -2.56 16 14 N -0.94 -56.42 11.15 21.65 0.24 -56.18 16 15 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 C 0.14 6.22 6.69 86.35 0.58 6.80 16 20 C 0.05 1.91 5.62 86.38 0.49 2.40 16 21 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.44 6.40 -2.39 -0.02 1.43 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.99 7.97 -2.39 -0.02 1.97 16 31 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 2.92 6.16 -2.39 -0.01 2.91 16 34 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 35 H 0.06 3.15 6.12 -2.38 -0.01 3.14 16 36 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 2.50 7.96 -2.38 -0.02 2.48 16 39 H 0.10 2.72 7.99 -2.39 -0.02 2.70 16 40 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -65.72 315.44 1.05 -64.67 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.97 Total: 6.55 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.66 Total: 5.51 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -6.02 Total: -113.85 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.59 Total: -10.42 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -65.72 1.05 -64.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135451144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.619 kcal (2) G-P(sol) polarization free energy of solvation -65.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds