Wall clock time and date at job start Mon Mar 30 2020 04:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47312 * 105.54833 * 3 2 1 5 5 C 1.36909 * 119.99854 * 95.90633 * 4 3 2 6 6 H 1.08000 * 120.00092 * 161.57901 * 5 4 3 7 7 C 1.38712 * 119.99750 * 341.58393 * 5 4 3 8 8 N 1.31623 * 120.00372 * 337.66738 * 7 5 4 9 9 Si 1.86803 * 119.99764 * 157.67739 * 7 5 4 10 10 H 1.48499 * 109.47471 * 59.99570 * 9 7 5 11 11 H 1.48499 * 109.47066 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47077 * 299.99480 * 9 7 5 13 13 C 1.38156 * 120.00417 * 275.63342 * 4 3 2 14 14 N 1.30143 * 125.45953 * 179.97438 * 13 4 3 15 15 C 1.31647 * 116.98626 * 179.77716 * 14 13 4 16 16 Cl 1.73604 * 122.09819 * 180.24895 * 15 14 13 17 17 C 1.33623 * 115.80487 * 0.51959 * 15 14 13 18 18 S 1.76164 * 125.45471 * 0.27170 * 13 4 3 19 19 H 1.09001 * 109.47239 * 345.55220 * 3 2 1 20 20 H 1.09000 * 109.47312 * 225.55248 * 3 2 1 21 21 H 0.96993 * 120.00427 * 179.97438 * 8 7 5 22 22 H 1.08002 * 125.87206 * 179.73227 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3711 -1.3306 5 6 3.4388 1.6696 -1.5970 6 1 4.0644 1.8995 -2.4468 7 6 2.9825 2.6898 -0.7754 8 7 1.9086 2.5090 -0.0362 9 14 3.8921 4.3204 -0.7182 10 1 3.9036 4.9286 -2.0729 11 1 3.2075 5.2362 0.2293 12 1 5.2882 4.0929 -0.2660 13 6 3.2162 -0.5908 -2.3150 14 7 3.6361 -0.3807 -3.5288 15 6 3.6887 -1.4228 -4.3315 16 17 4.2341 -1.2948 -5.9747 17 6 3.2905 -2.5841 -3.8039 18 16 2.8184 -2.2970 -2.1304 19 1 2.9718 -0.9943 0.2564 20 1 2.9710 0.7204 0.7336 21 1 1.5898 3.2223 0.5386 22 1 3.2631 -3.5351 -4.3151 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165086127.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:06 Heat of formation + Delta-G solvation = 68.279678 kcal Electronic energy + Delta-G solvation = -12797.374254 eV Core-core repulsion = 10312.506093 eV Total energy + Delta-G solvation = -2484.868161 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 242.993 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34002 -38.73543 -37.27765 -36.56000 -34.04335 -30.59492 -29.18104 -27.12317 -24.19907 -21.43566 -19.95842 -18.76725 -18.28741 -17.53542 -16.43372 -15.97966 -15.82883 -15.56336 -14.84254 -14.18883 -14.04555 -13.63788 -13.28694 -12.94758 -12.87302 -12.81726 -12.43116 -12.32617 -12.11285 -11.82415 -11.50272 -10.60861 -10.25039 -9.96069 -8.84885 -8.54333 -5.92398 0.10867 0.39988 0.55414 1.39566 1.49801 1.52517 1.61940 1.88271 2.06398 2.15766 2.30393 2.81665 2.92547 3.36692 4.19225 4.44135 4.63347 4.66098 5.08440 5.39446 5.51461 6.31714 6.85694 6.88922 7.04217 7.40943 8.44667 Molecular weight = 242.99amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.009377 C = 0.007116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.489082 B = 2985.153841 C = 3934.052910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.250 3.750 3 C 0.232 3.768 4 N -0.386 5.386 5 C -0.311 4.311 6 H 0.102 0.898 7 C 0.007 3.993 8 N -0.880 5.880 9 Si 0.999 3.001 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.256 1.256 13 C 0.304 3.696 14 N -0.609 5.609 15 C 0.176 3.824 16 Cl -0.030 7.030 17 C -0.330 4.330 18 S 0.032 5.968 19 H 0.129 0.871 20 H 0.144 0.856 21 H 0.283 0.717 22 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -5.751 -0.033 7.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.068 4.068 3 C 0.105 3.895 4 N -0.083 5.083 5 C -0.443 4.443 6 H 0.119 0.881 7 C -0.199 4.199 8 N -0.515 5.515 9 Si 0.822 3.178 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.181 1.181 13 C -0.064 4.064 14 N -0.342 5.342 15 C 0.016 3.984 16 Cl -0.002 7.002 17 C -0.475 4.475 18 S 0.276 5.724 19 H 0.146 0.854 20 H 0.162 0.838 21 H 0.093 0.907 22 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.487 -5.568 0.869 6.627 hybrid contribution 0.793 1.091 -1.206 1.810 sum 4.280 -4.477 -0.337 6.203 Atomic orbital electron populations 1.80906 1.14456 1.13085 1.08474 1.29489 0.95584 0.89386 0.92356 1.19138 0.80733 1.04071 0.85533 1.42301 1.54558 1.05642 1.05817 1.19956 1.28648 0.80678 1.15007 0.88079 1.26100 0.95032 1.02712 0.96028 1.70020 1.18534 1.36532 1.26454 0.84879 0.78828 0.76020 0.78081 1.20474 1.20354 1.18059 1.24273 1.00793 0.92060 0.89226 1.65550 1.33487 1.32159 1.02960 1.20003 1.00829 0.88795 0.88820 1.98318 1.88431 1.98486 1.14968 1.25679 1.22487 1.02446 0.96894 1.84264 1.70731 1.04534 1.12869 0.85406 0.83847 0.90704 0.78979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.58 18.54 20.01 0.37 -22.21 14 2 C 0.25 10.56 13.59 89.44 1.22 11.77 14 3 C 0.23 8.51 5.04 84.57 0.43 8.93 14 4 N -0.39 -16.86 2.68 -529.56 -1.42 -18.28 14 5 C -0.31 -14.66 9.42 84.01 0.79 -13.87 14 6 H 0.10 5.06 7.59 -2.91 -0.02 5.04 14 7 C 0.01 0.31 4.83 84.84 0.41 0.72 14 8 N -0.88 -40.52 9.56 21.63 0.21 -40.31 14 9 Si 1.00 36.46 29.61 68.60 2.03 38.49 14 10 H -0.28 -10.63 7.11 99.48 0.71 -9.93 14 11 H -0.28 -9.97 7.11 99.48 0.71 -9.26 14 12 H -0.26 -8.86 7.11 99.48 0.71 -8.16 14 13 C 0.30 13.15 7.83 179.34 1.40 14.56 14 14 N -0.61 -27.79 9.91 -189.01 -1.87 -29.66 14 15 C 0.18 6.93 7.24 83.67 0.61 7.53 14 16 Cl -0.03 -1.01 29.19 -2.72 -0.08 -1.09 14 17 C -0.33 -11.37 11.18 66.77 0.75 -10.62 14 18 S 0.03 1.11 22.17 -56.49 -1.25 -0.15 14 19 H 0.13 3.64 7.34 -2.39 -0.02 3.63 14 20 H 0.14 5.13 6.53 -2.39 -0.02 5.11 14 21 H 0.28 12.53 8.31 -92.71 -0.77 11.76 14 22 H 0.19 5.33 8.06 -2.91 -0.02 5.31 14 Total: -1.00 -55.52 239.93 4.86 -50.66 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.27 Total: 3.50 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 5.60 Total: 19.03 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -2.71 Total: -110.46 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -1.25 Total: -0.15 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -55.52 4.86 -50.66 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165086127.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.939 kcal (2) G-P(sol) polarization free energy of solvation -55.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds