Wall clock time and date at job start Mon Mar 30 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 H 1.08996 * 109.57719 * 29.83925 * 3 2 1 5 5 C 1.53122 * 109.51884 * 269.68130 * 3 2 1 6 6 C 1.53046 * 109.27310 * 182.44284 * 5 3 2 7 7 N 1.46845 * 109.52304 * 59.18095 * 6 5 3 8 8 C 1.46901 * 111.00016 * 174.15691 * 7 6 5 9 9 C 1.53000 * 109.46789 * 63.40385 * 8 7 6 10 10 C 1.50706 * 109.47040 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99416 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00029 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99878 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47117 * 90.00450 * 14 12 10 16 16 H 1.48500 * 109.46759 * 209.99935 * 14 12 10 17 17 H 1.48498 * 109.47475 * 329.99910 * 14 12 10 18 18 C 1.46849 * 111.19881 * 298.25715 * 7 6 5 19 19 H 1.08999 * 109.45684 * 301.73704 * 18 7 6 20 20 C 1.53002 * 109.45942 * 181.76053 * 18 7 6 21 21 N 1.46897 * 109.47357 * 68.41179 * 20 18 7 22 22 C 1.53037 * 109.52467 * 61.74401 * 18 7 6 23 23 H 1.08995 * 109.47737 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46996 * 300.00443 * 1 2 3 25 25 H 1.09001 * 109.47561 * 59.99558 * 1 2 3 26 26 H 1.08997 * 109.50079 * 62.50536 * 5 3 2 27 27 H 1.08994 * 109.50549 * 302.37821 * 5 3 2 28 28 H 1.08998 * 109.46008 * 299.16276 * 6 5 3 29 29 H 1.09003 * 109.45786 * 179.19662 * 6 5 3 30 30 H 1.08997 * 109.47459 * 183.40265 * 8 7 6 31 31 H 1.08994 * 109.47059 * 303.40455 * 8 7 6 32 32 H 1.09007 * 109.47439 * 299.99797 * 9 8 7 33 33 H 1.08994 * 109.47263 * 60.00195 * 9 8 7 34 34 H 0.96999 * 119.99639 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46369 * 188.41252 * 20 18 7 36 36 H 1.08999 * 109.47075 * 308.40293 * 20 18 7 37 37 H 1.00893 * 111.00002 * 56.04459 * 21 20 18 38 38 H 1.00902 * 111.00026 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.50502 * 60.76185 * 22 18 7 40 40 H 1.08993 * 109.50194 * 180.87989 * 22 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4432 6 6 2.9038 3.1415 -1.4367 7 7 4.1910 3.0494 -0.7359 8 6 4.9333 4.3136 -0.8300 9 6 4.1480 5.4198 -0.1226 10 6 4.9092 6.7169 -0.2196 11 1 5.8583 6.7488 -0.7339 12 6 4.3943 7.8625 0.3492 13 7 3.2388 7.8235 0.9760 14 14 5.3382 9.4701 0.2296 15 1 4.9283 10.1944 -1.0002 16 1 5.0418 10.3077 1.4194 17 1 6.7948 9.1860 0.1746 18 6 4.0054 2.6510 0.6652 19 1 3.3595 3.3726 1.1654 20 6 5.3640 2.6100 1.3677 21 7 5.8918 3.9751 1.4932 22 6 3.3602 1.2644 0.7216 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.2632 1.8418 -1.9497 27 1 2.8595 1.0528 -1.9652 28 1 2.2632 3.8609 -0.9266 29 1 3.0716 3.4685 -2.4630 30 1 5.9076 4.1990 -0.3550 31 1 5.0691 4.5780 -1.8786 32 1 3.1736 5.5345 -0.5976 33 1 4.0121 5.1554 0.9260 34 1 2.8764 8.6295 1.3758 35 1 5.2471 2.1730 2.3595 36 1 6.0570 2.0047 0.7834 37 1 5.2375 4.5728 1.9756 38 1 6.7891 3.9749 1.9548 39 1 4.0118 0.5397 0.2336 40 1 3.2083 0.9758 1.7616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165665469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:38 Heat of formation + Delta-G solvation = -36.616422 kcal Electronic energy + Delta-G solvation = -18802.702779 eV Core-core repulsion = 16038.582235 eV Total energy + Delta-G solvation = -2764.120544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.48320 -37.44085 -33.98118 -33.39138 -31.92725 -30.09886 -28.67602 -26.68754 -24.85467 -23.89519 -22.71671 -21.51564 -20.49571 -18.62611 -16.59069 -16.17947 -15.54243 -15.33866 -15.25807 -14.75585 -14.40726 -14.30511 -13.74452 -13.25571 -12.95110 -12.61308 -12.16419 -12.09158 -11.82580 -11.56112 -11.47223 -11.08779 -10.94291 -10.85022 -10.62605 -10.51237 -10.35938 -10.16487 -9.71415 -9.52294 -9.34323 -8.95440 -8.24655 -7.61671 -7.25707 -5.91635 -3.90355 3.35474 3.42055 3.45940 3.79194 4.51480 4.63549 4.95041 5.03785 5.16364 5.26690 5.34686 5.39351 5.44167 5.55756 5.60160 5.66739 5.77840 5.81253 5.89534 6.01573 6.10894 6.18857 6.21946 6.35667 6.50788 6.62468 6.71274 7.12370 7.29013 7.40910 7.59921 7.74154 7.86680 7.90075 8.03057 8.15599 8.22017 8.62956 9.17191 9.71832 11.19715 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.006024 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.751429 B = 4646.855146 C = 4985.327370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.090 3.910 4 H 0.057 0.943 5 C -0.134 4.134 6 C 0.054 3.946 7 N -0.531 5.531 8 C 0.040 3.960 9 C 0.007 3.993 10 C -0.494 4.494 11 H 0.053 0.947 12 C 0.052 3.948 13 N -0.903 5.903 14 Si 0.887 3.113 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.274 1.274 18 C 0.087 3.913 19 H 0.047 0.953 20 C 0.072 3.928 21 N -0.827 5.827 22 C -0.105 4.105 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.039 0.961 32 H -0.001 1.001 33 H 0.019 0.981 34 H 0.256 0.744 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.354 0.646 38 H 0.327 0.673 39 H 0.076 0.924 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.041 -13.305 0.408 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.075 0.925 5 C -0.172 4.172 6 C -0.075 4.075 7 N -0.255 5.255 8 C -0.087 4.087 9 C -0.032 4.032 10 C -0.533 4.533 11 H 0.072 0.928 12 C -0.147 4.147 13 N -0.544 5.544 14 Si 0.715 3.285 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.199 1.199 18 C -0.022 4.022 19 H 0.065 0.935 20 C -0.059 4.059 21 N -0.359 5.359 22 C -0.144 4.144 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.057 0.943 32 H 0.018 0.982 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.092 0.908 37 H 0.171 0.829 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.772 -13.717 -0.510 13.840 hybrid contribution -0.552 1.804 1.337 2.312 sum -2.324 -11.913 0.827 12.165 Atomic orbital electron populations 1.22736 0.81673 1.02182 0.99921 1.87882 1.19170 1.28510 1.95141 1.22210 0.94770 0.83695 0.96122 0.92528 1.22081 1.00269 0.98303 0.96568 1.21990 0.91348 0.94668 0.99479 1.62405 1.17524 1.34227 1.11347 1.22965 1.00790 0.85750 0.99180 1.19565 0.94735 0.93267 0.95591 1.21157 1.05266 0.93396 1.33459 0.92829 1.24998 0.95032 0.98819 0.95868 1.69968 1.18535 1.28210 1.37669 0.86680 0.80417 0.84108 0.77261 1.20998 1.21595 1.19932 1.21492 0.95571 0.94386 0.90764 0.93535 1.21731 0.95922 0.91248 0.97049 1.59323 1.07784 1.09016 1.59785 1.21644 0.94936 0.97987 0.99798 0.90039 0.94261 0.94179 0.92292 0.90728 0.94276 0.91012 0.86032 0.94279 0.98243 0.96332 0.93404 0.96177 0.90753 0.82903 0.86057 0.90523 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.39 -5.46 10.35 -35.23 -0.36 -5.83 16 3 C 0.09 1.31 2.68 -26.60 -0.07 1.24 16 4 H 0.06 0.85 7.79 -51.93 -0.40 0.44 16 5 C -0.13 -1.99 5.72 -26.64 -0.15 -2.14 16 6 C 0.05 0.95 4.98 -3.83 -0.02 0.93 16 7 N -0.53 -9.74 4.69 -226.68 -1.06 -10.80 16 8 C 0.04 0.84 4.69 -3.82 -0.02 0.82 16 9 C 0.01 0.17 3.63 -27.88 -0.10 0.06 16 10 C -0.49 -13.65 9.11 -34.44 -0.31 -13.96 16 11 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 13 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.09 1.46 1.78 -67.72 -0.12 1.34 16 19 H 0.05 0.90 6.62 -51.93 -0.34 0.56 16 20 C 0.07 1.09 6.00 -3.82 -0.02 1.07 16 21 N -0.83 -13.84 5.54 -10.37 -0.06 -13.90 16 22 C -0.11 -1.54 5.02 -26.65 -0.13 -1.67 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.04 0.41 7.96 -51.93 -0.41 -0.01 16 26 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.78 6.69 -51.93 -0.35 0.43 16 29 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.12 2.58 5.15 -51.93 -0.27 2.31 16 31 H 0.04 0.87 8.11 -51.93 -0.42 0.44 16 32 H 0.00 -0.02 6.61 -51.93 -0.34 -0.36 16 33 H 0.02 0.48 4.34 -51.93 -0.23 0.25 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.35 6.68 6.88 -39.30 -0.27 6.41 16 38 H 0.33 4.68 9.08 -39.29 -0.36 4.33 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -29.68 302.88 -7.89 -37.56 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.72 Total: 7.32 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 0.04 Total: -9.50 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.38 Total: -50.79 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.36 Total: -5.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.68 -7.89 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165665469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.945 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds