Wall clock time and date at job start Mon Mar 30 2020 04:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 H 1.08996 * 109.57719 * 29.83925 * 3 2 1 5 5 C 1.53122 * 109.51884 * 269.68130 * 3 2 1 6 6 C 1.53046 * 109.27310 * 182.44284 * 5 3 2 7 7 N 1.46845 * 109.52304 * 59.18095 * 6 5 3 8 8 C 1.46901 * 111.00016 * 174.15691 * 7 6 5 9 9 C 1.53000 * 109.46789 * 63.40385 * 8 7 6 10 10 C 1.50706 * 109.47040 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99416 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00029 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99878 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47117 * 90.00450 * 14 12 10 16 16 H 1.48500 * 109.46759 * 209.99935 * 14 12 10 17 17 H 1.48498 * 109.47475 * 329.99910 * 14 12 10 18 18 C 1.46849 * 111.19881 * 298.25715 * 7 6 5 19 19 H 1.08999 * 109.45684 * 301.73704 * 18 7 6 20 20 C 1.53002 * 109.45942 * 181.76053 * 18 7 6 21 21 N 1.46897 * 109.47357 * 68.41179 * 20 18 7 22 22 C 1.53037 * 109.52467 * 61.74401 * 18 7 6 23 23 H 1.08995 * 109.47737 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46996 * 300.00443 * 1 2 3 25 25 H 1.09001 * 109.47561 * 59.99558 * 1 2 3 26 26 H 1.08997 * 109.50079 * 62.50536 * 5 3 2 27 27 H 1.08994 * 109.50549 * 302.37821 * 5 3 2 28 28 H 1.08998 * 109.46008 * 299.16276 * 6 5 3 29 29 H 1.09003 * 109.45786 * 179.19662 * 6 5 3 30 30 H 1.08997 * 109.47459 * 183.40265 * 8 7 6 31 31 H 1.08994 * 109.47059 * 303.40455 * 8 7 6 32 32 H 1.09007 * 109.47439 * 299.99797 * 9 8 7 33 33 H 1.08994 * 109.47263 * 60.00195 * 9 8 7 34 34 H 0.96999 * 119.99639 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46369 * 188.41252 * 20 18 7 36 36 H 1.08999 * 109.47075 * 308.40293 * 20 18 7 37 37 H 1.00893 * 111.00002 * 56.04459 * 21 20 18 38 38 H 1.00902 * 111.00026 * 179.97438 * 21 20 18 39 39 H 1.08996 * 109.50502 * 60.76185 * 22 18 7 40 40 H 1.08993 * 109.50194 * 180.87989 * 22 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 0.5110 5 6 2.2256 1.7696 -1.4432 6 6 2.9038 3.1415 -1.4367 7 7 4.1910 3.0494 -0.7359 8 6 4.9333 4.3136 -0.8300 9 6 4.1480 5.4198 -0.1226 10 6 4.9092 6.7169 -0.2196 11 1 5.8583 6.7488 -0.7339 12 6 4.3943 7.8625 0.3492 13 7 3.2388 7.8235 0.9760 14 14 5.3382 9.4701 0.2296 15 1 4.9283 10.1944 -1.0002 16 1 5.0418 10.3077 1.4194 17 1 6.7948 9.1860 0.1746 18 6 4.0054 2.6510 0.6652 19 1 3.3595 3.3726 1.1654 20 6 5.3640 2.6100 1.3677 21 7 5.8918 3.9751 1.4932 22 6 3.3602 1.2644 0.7216 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.2632 1.8418 -1.9497 27 1 2.8595 1.0528 -1.9652 28 1 2.2632 3.8609 -0.9266 29 1 3.0716 3.4685 -2.4630 30 1 5.9076 4.1990 -0.3550 31 1 5.0691 4.5780 -1.8786 32 1 3.1736 5.5345 -0.5976 33 1 4.0121 5.1554 0.9260 34 1 2.8764 8.6295 1.3758 35 1 5.2471 2.1730 2.3595 36 1 6.0570 2.0047 0.7834 37 1 5.2375 4.5728 1.9756 38 1 6.7891 3.9749 1.9548 39 1 4.0118 0.5397 0.2336 40 1 3.2083 0.9758 1.7616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165665469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:38 Heat of formation + Delta-G solvation = -58.261265 kcal Electronic energy + Delta-G solvation = -18803.641370 eV Core-core repulsion = 16038.582235 eV Total energy + Delta-G solvation = -2765.059135 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82657 -38.64480 -35.40174 -35.17346 -33.62908 -31.41919 -30.45141 -27.81435 -26.34573 -25.41399 -24.30814 -23.07462 -21.81204 -20.15152 -18.45579 -17.55644 -16.88058 -16.65164 -16.52186 -16.35657 -15.94740 -15.73750 -14.98631 -14.63969 -14.41735 -14.28281 -13.81331 -13.44179 -13.29030 -12.96682 -12.87010 -12.70059 -12.58687 -12.46664 -12.18123 -11.86952 -11.70900 -11.64221 -11.48115 -11.36215 -10.99619 -10.45364 -10.40343 -9.05775 -8.84905 -8.09222 -6.15767 1.42014 1.42667 1.53707 2.46851 2.73562 3.18815 3.24039 3.73167 3.79805 3.91971 4.08678 4.23958 4.35798 4.45237 4.49990 4.52596 4.55704 4.60185 4.73795 4.79105 4.85676 4.91631 4.93939 5.03414 5.04716 5.17280 5.20471 5.36412 5.47371 5.72266 5.85288 6.06179 6.20901 6.24488 6.38447 6.51881 6.60408 6.73595 7.01799 7.50742 9.01482 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.006024 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.751429 B = 4646.855146 C = 4985.327370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.092 3.908 4 H 0.048 0.952 5 C -0.123 4.123 6 C 0.054 3.946 7 N -0.524 5.524 8 C 0.054 3.946 9 C 0.023 3.977 10 C -0.506 4.506 11 H 0.053 0.947 12 C 0.000 4.000 13 N -0.938 5.938 14 Si 0.954 3.046 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.263 1.263 18 C 0.087 3.913 19 H 0.015 0.985 20 C 0.076 3.924 21 N -0.840 5.840 22 C -0.098 4.098 23 H 0.104 0.896 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.009 0.991 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.026 0.974 32 H -0.038 1.038 33 H 0.011 0.989 34 H 0.257 0.743 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.340 0.660 38 H 0.342 0.658 39 H 0.083 0.917 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -14.426 0.468 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C 0.034 3.966 4 H 0.066 0.934 5 C -0.161 4.161 6 C -0.074 4.074 7 N -0.248 5.248 8 C -0.073 4.073 9 C -0.016 4.016 10 C -0.545 4.545 11 H 0.071 0.929 12 C -0.196 4.196 13 N -0.580 5.580 14 Si 0.780 3.220 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.022 4.022 19 H 0.033 0.967 20 C -0.055 4.055 21 N -0.373 5.373 22 C -0.136 4.136 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.045 0.955 32 H -0.020 1.020 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.101 0.899 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.048 -14.866 -0.456 14.910 hybrid contribution -0.833 2.112 1.317 2.625 sum -1.881 -12.754 0.861 12.921 Atomic orbital electron populations 1.22970 0.79961 1.03892 1.00418 1.87857 1.21035 1.27612 1.95179 1.22098 0.94810 0.84109 0.95593 0.93389 1.21981 1.00677 0.96201 0.97287 1.21995 0.90740 0.95962 0.98733 1.62442 1.17673 1.31988 1.12649 1.22744 1.00922 0.85872 0.97765 1.19398 0.93065 0.93967 0.95148 1.21499 1.05348 0.94615 1.33073 0.92862 1.25802 0.95864 1.02398 0.95519 1.70102 1.20120 1.29147 1.38637 0.85609 0.79494 0.79688 0.77166 1.20714 1.21278 1.18755 1.21574 0.96349 0.94952 0.89335 0.96680 1.21748 0.94929 0.90616 0.98205 1.59211 1.08280 1.09777 1.59999 1.21570 0.94829 0.96263 1.00937 0.87760 0.93825 0.93675 0.90852 0.90242 0.97262 0.91355 0.85350 0.95530 1.01990 0.97088 0.93403 0.93813 0.89788 0.84492 0.84453 0.89855 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.69 16 2 O -0.40 -10.34 10.35 -148.98 -1.54 -11.88 16 3 C 0.09 2.57 2.68 30.68 0.08 2.65 16 4 H 0.05 1.42 7.79 -2.39 -0.02 1.40 16 5 C -0.12 -3.55 5.72 30.65 0.18 -3.37 16 6 C 0.05 1.95 4.98 86.33 0.43 2.38 16 7 N -0.52 -19.23 4.69 -871.09 -4.09 -23.31 16 8 C 0.05 2.34 4.69 86.30 0.40 2.74 16 9 C 0.02 1.16 3.63 29.85 0.11 1.27 16 10 C -0.51 -28.39 9.11 25.60 0.23 -28.15 16 11 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.94 -56.83 13.29 21.45 0.28 -56.55 16 14 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.09 2.88 1.78 44.94 0.08 2.96 16 19 H 0.02 0.61 6.62 -2.39 -0.02 0.59 16 20 C 0.08 2.19 6.00 86.30 0.52 2.71 16 21 N -0.84 -27.66 5.54 -186.72 -1.03 -28.69 16 22 C -0.10 -2.69 5.02 30.65 0.15 -2.54 16 23 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 0.81 8.09 -2.38 -0.02 0.79 16 25 H 0.04 0.83 7.96 -2.39 -0.02 0.81 16 26 H 0.07 1.89 7.96 -2.39 -0.02 1.87 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.01 0.38 6.69 -2.39 -0.02 0.37 16 29 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 30 H 0.13 5.40 5.15 -2.39 -0.01 5.39 16 31 H 0.03 1.19 8.11 -2.39 -0.02 1.17 16 32 H -0.04 -2.25 6.61 -2.38 -0.02 -2.26 16 33 H 0.01 0.59 4.34 -2.39 -0.01 0.58 16 34 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.04 1.08 8.13 -2.39 -0.02 1.06 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.34 12.98 6.88 -89.70 -0.62 12.37 16 38 H 0.34 9.38 9.08 -89.69 -0.81 8.56 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -63.59 302.88 -0.88 -64.47 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.41 Total: 26.46 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 3.87 Total: -17.17 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -4.84 Total: -108.55 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.54 Total: -11.88 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -63.59 -0.88 -64.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165665469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.212 kcal (2) G-P(sol) polarization free energy of solvation -63.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds