Wall clock time and date at job start Mon Mar 30 2020 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86807 * 120.00005 * 2 1 4 4 H 1.48498 * 109.46875 * 274.97791 * 3 2 1 5 5 H 1.48507 * 109.47046 * 34.97217 * 3 2 1 6 6 H 1.48492 * 109.47608 * 154.97774 * 3 2 1 7 7 C 1.39871 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00006 * 186.02668 * 7 2 1 9 9 C 1.41393 * 120.00025 * 6.03254 * 7 2 1 10 10 N 1.35302 * 126.12480 * 354.33042 * 9 7 2 11 11 C 1.29823 * 106.91468 * 180.16475 * 10 9 7 12 12 N 1.35306 * 108.80025 * 359.37491 * 11 10 9 13 13 N 1.29045 * 107.71348 * 0.85369 * 12 11 10 14 14 C 1.46206 * 126.16999 * 181.45485 * 12 11 10 15 15 C 1.52304 * 112.26711 * 336.17640 * 14 12 11 16 16 C 1.53500 * 110.62679 * 60.70048 * 15 14 12 17 17 S 1.76815 * 127.67202 * 178.97677 * 11 10 9 18 18 O 1.42103 * 104.73686 * 284.56145 * 17 11 10 19 19 O 1.42101 * 104.74473 * 53.39634 * 17 11 10 20 20 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 21 21 H 1.08999 * 108.92399 * 96.89439 * 14 12 11 22 22 H 1.08999 * 108.92182 * 215.55143 * 14 12 11 23 23 H 1.08999 * 109.24616 * 180.99519 * 15 14 12 24 24 H 1.08996 * 109.24504 * 300.44248 * 15 14 12 25 25 H 1.09002 * 109.87939 * 48.60384 * 16 15 14 26 26 H 1.08997 * 109.87701 * 169.66675 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3849 2.1072 -1.3948 5 1 1.4965 2.6201 0.8025 6 1 3.5888 1.4123 0.5921 7 6 2.0080 -1.2113 0.0005 8 1 3.0835 -1.2138 0.0987 9 6 1.3070 -2.4325 -0.1276 10 7 -0.0376 -2.5819 -0.1499 11 6 -0.2744 -3.8520 -0.2770 12 7 0.9053 -4.5104 -0.3496 13 7 1.8495 -3.6367 -0.2479 14 6 1.0799 -5.9513 -0.5262 15 6 -0.1354 -6.7414 -0.0590 16 6 -1.3814 -6.3417 -0.8615 17 16 -1.8475 -4.6568 -0.3404 18 8 -2.3109 -4.6510 1.0030 19 8 -2.5565 -3.9843 -1.3720 20 1 -0.4850 0.8401 -0.0004 21 1 1.2524 -6.1597 -1.5821 22 1 1.9506 -6.2744 0.0443 23 1 0.0538 -7.8061 -0.1959 24 1 -0.3099 -6.5406 0.9980 25 1 -1.1542 -6.3504 -1.9276 26 1 -2.1963 -7.0339 -0.6498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215617490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:34 Heat of formation + Delta-G solvation = 22.047586 kcal Electronic energy + Delta-G solvation = -15762.492052 eV Core-core repulsion = 12970.743047 eV Total energy + Delta-G solvation = -2791.749005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.50629 -36.85281 -36.05652 -35.58434 -33.39877 -31.52957 -29.97078 -27.62160 -25.72600 -22.85645 -21.37412 -20.60670 -18.36606 -17.57062 -16.64922 -16.33984 -15.70341 -15.33828 -15.11581 -14.69518 -14.46264 -13.23508 -13.05776 -12.84600 -11.95176 -11.86390 -11.75990 -11.66989 -11.61515 -11.27092 -11.14619 -10.60239 -10.37906 -10.26107 -9.97561 -9.40566 -8.98908 -8.61179 -8.04589 -6.43740 -4.41626 0.21416 2.59346 2.93090 3.13945 3.20343 3.24778 3.35094 3.89330 4.03043 4.10644 4.26453 4.34387 4.73602 4.91324 5.05553 5.21884 5.39212 5.48688 5.54444 5.71592 6.22352 6.86790 7.39393 7.69285 8.00955 8.36499 8.83419 8.95774 9.87161 10.53430 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.039521 B = 0.008341 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.306882 B = 3356.271800 C = 3863.620976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.078 3.922 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.330 3.670 10 N -0.381 5.381 11 C -0.340 4.340 12 N -0.305 5.305 13 N -0.402 5.402 14 C 0.116 3.884 15 C -0.122 4.122 16 C -0.605 4.605 17 S 2.530 3.470 18 O -0.922 6.922 19 O -0.918 6.918 20 H 0.276 0.724 21 H 0.085 0.915 22 H 0.103 0.897 23 H 0.113 0.887 24 H 0.092 0.908 25 H 0.142 0.858 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -12.910 -1.825 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.145 4.145 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.107 0.893 9 C 0.072 3.928 10 N -0.111 5.111 11 C -0.697 4.697 12 N -0.107 5.107 13 N -0.242 5.242 14 C -0.007 4.007 15 C -0.161 4.161 16 C -0.735 4.735 17 S 2.702 3.298 18 O -0.918 6.918 19 O -0.914 6.914 20 H 0.087 0.913 21 H 0.103 0.897 22 H 0.121 0.879 23 H 0.131 0.869 24 H 0.110 0.890 25 H 0.160 0.840 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.548 -12.341 -1.617 12.705 hybrid contribution 1.081 0.277 -0.264 1.147 sum -1.467 -12.064 -1.881 12.298 Atomic orbital electron populations 1.70001 1.06970 1.28315 1.33878 1.25821 0.94880 1.00811 0.92962 0.86139 0.80115 0.80575 0.78787 1.19678 1.20288 1.18706 1.18228 0.94277 0.86377 1.49678 0.89271 1.21257 0.85267 0.91118 0.95154 1.71603 1.16699 1.08648 1.14155 1.37085 1.11260 1.00648 1.20705 1.46729 1.03448 1.06362 1.54153 1.74495 1.15896 0.99792 1.33985 1.21441 0.99649 0.76372 1.03220 1.21586 0.91193 1.02780 1.00577 1.30419 1.08256 1.23405 1.11423 1.05074 0.72857 0.76517 0.75384 1.93595 1.77514 1.86018 1.34673 1.93591 1.68646 1.70531 1.58598 0.91348 0.89694 0.87893 0.86895 0.88967 0.83950 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.27 11.95 55.54 0.66 -21.61 15 2 C 0.08 2.14 5.49 -17.35 -0.10 2.05 15 3 Si 0.92 20.13 29.56 -169.99 -5.03 15.10 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 15 7 C -0.44 -12.93 9.49 -37.77 -0.36 -13.29 15 8 H 0.09 2.47 7.85 -52.49 -0.41 2.05 15 9 C 0.33 9.83 7.61 -157.45 -1.20 8.63 15 10 N -0.38 -11.24 9.62 -12.85 -0.12 -11.36 15 11 C -0.34 -8.12 7.73 -90.69 -0.70 -8.82 15 12 N -0.31 -6.66 3.73 -62.12 -0.23 -6.89 15 13 N -0.40 -10.67 12.17 30.93 0.38 -10.29 15 14 C 0.12 1.58 6.81 -4.56 -0.03 1.55 15 15 C -0.12 -1.20 5.76 -26.83 -0.15 -1.35 15 16 C -0.61 -6.00 6.62 37.42 0.25 -5.75 15 17 S 2.53 45.12 5.69 -107.50 -0.61 44.51 15 18 O -0.92 -18.61 17.97 -57.47 -1.03 -19.64 15 19 O -0.92 -19.23 17.97 -57.47 -1.03 -20.26 15 20 H 0.28 7.27 8.30 -40.82 -0.34 6.94 15 21 H 0.08 0.97 8.14 -51.93 -0.42 0.54 15 22 H 0.10 1.26 8.14 -51.93 -0.42 0.84 15 23 H 0.11 0.63 8.14 -51.93 -0.42 0.20 15 24 H 0.09 0.96 8.06 -51.93 -0.42 0.55 15 25 H 0.14 1.15 8.13 -51.93 -0.42 0.73 15 26 H 0.14 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 244.40 15.07 3.68 3.68 Total: -1.00 -39.87 244.40 -7.70 -47.57 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -2.08 Total: -3.83 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.29 Total: -16.98 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.68 Total: -50.15 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.07 Total: -39.90 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Atomic # 16 Polarization: 45.12 SS G_CDS: -0.61 Total: 44.51 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -39.87 -7.70 -47.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215617490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.620 kcal (2) G-P(sol) polarization free energy of solvation -39.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds