Wall clock time and date at job start Mon Mar 30 2020 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86807 * 120.00005 * 2 1 4 4 H 1.48498 * 109.46875 * 274.97791 * 3 2 1 5 5 H 1.48507 * 109.47046 * 34.97217 * 3 2 1 6 6 H 1.48492 * 109.47608 * 154.97774 * 3 2 1 7 7 C 1.39871 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00006 * 186.02668 * 7 2 1 9 9 C 1.41393 * 120.00025 * 6.03254 * 7 2 1 10 10 N 1.35302 * 126.12480 * 354.33042 * 9 7 2 11 11 C 1.29823 * 106.91468 * 180.16475 * 10 9 7 12 12 N 1.35306 * 108.80025 * 359.37491 * 11 10 9 13 13 N 1.29045 * 107.71348 * 0.85369 * 12 11 10 14 14 C 1.46206 * 126.16999 * 181.45485 * 12 11 10 15 15 C 1.52304 * 112.26711 * 336.17640 * 14 12 11 16 16 C 1.53500 * 110.62679 * 60.70048 * 15 14 12 17 17 S 1.76815 * 127.67202 * 178.97677 * 11 10 9 18 18 O 1.42103 * 104.73686 * 284.56145 * 17 11 10 19 19 O 1.42101 * 104.74473 * 53.39634 * 17 11 10 20 20 H 0.96998 * 119.99745 * 0.02562 * 1 2 3 21 21 H 1.08999 * 108.92399 * 96.89439 * 14 12 11 22 22 H 1.08999 * 108.92182 * 215.55143 * 14 12 11 23 23 H 1.08999 * 109.24616 * 180.99519 * 15 14 12 24 24 H 1.08996 * 109.24504 * 300.44248 * 15 14 12 25 25 H 1.09002 * 109.87939 * 48.60384 * 16 15 14 26 26 H 1.08997 * 109.87701 * 169.66675 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3849 2.1072 -1.3948 5 1 1.4965 2.6201 0.8025 6 1 3.5888 1.4123 0.5921 7 6 2.0080 -1.2113 0.0005 8 1 3.0835 -1.2138 0.0987 9 6 1.3070 -2.4325 -0.1276 10 7 -0.0376 -2.5819 -0.1499 11 6 -0.2744 -3.8520 -0.2770 12 7 0.9053 -4.5104 -0.3496 13 7 1.8495 -3.6367 -0.2479 14 6 1.0799 -5.9513 -0.5262 15 6 -0.1354 -6.7414 -0.0590 16 6 -1.3814 -6.3417 -0.8615 17 16 -1.8475 -4.6568 -0.3404 18 8 -2.3109 -4.6510 1.0030 19 8 -2.5565 -3.9843 -1.3720 20 1 -0.4850 0.8401 -0.0004 21 1 1.2524 -6.1597 -1.5821 22 1 1.9506 -6.2744 0.0443 23 1 0.0538 -7.8061 -0.1959 24 1 -0.3099 -6.5406 0.9980 25 1 -1.1542 -6.3504 -1.9276 26 1 -2.1963 -7.0339 -0.6498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215617490.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:34 Heat of formation + Delta-G solvation = -12.765706 kcal Electronic energy + Delta-G solvation = -15764.001669 eV Core-core repulsion = 12970.743047 eV Total energy + Delta-G solvation = -2793.258623 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.36111 -38.29286 -37.35929 -36.99791 -35.31532 -33.25734 -31.77635 -29.08404 -27.48347 -24.22784 -23.05851 -22.26236 -19.74458 -19.38115 -18.30404 -17.76823 -17.20365 -16.97098 -16.55322 -16.46870 -15.55799 -14.88333 -14.25429 -13.97591 -13.54440 -13.32884 -13.22412 -13.20430 -12.98629 -12.79955 -12.57766 -12.53839 -11.98723 -11.80060 -11.54712 -11.30708 -10.90231 -10.60734 -9.97736 -8.46585 -6.54742 -1.04890 0.79819 1.38800 1.40214 1.48603 1.57074 1.92467 2.21537 2.27073 2.70315 3.08947 3.36803 3.39053 3.63101 4.00102 4.11064 4.32303 4.45189 4.62353 4.75965 4.90497 4.96421 5.31548 5.92723 6.10439 6.27559 6.80099 6.87486 7.89715 8.53603 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.039521 B = 0.008341 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.306882 B = 3356.271800 C = 3863.620976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.027 3.973 3 Si 1.005 2.995 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.289 3.711 10 N -0.456 5.456 11 C -0.349 4.349 12 N -0.290 5.290 13 N -0.415 5.415 14 C 0.085 3.915 15 C -0.121 4.121 16 C -0.537 4.537 17 S 2.501 3.499 18 O -0.961 6.961 19 O -0.965 6.965 20 H 0.280 0.720 21 H 0.120 0.880 22 H 0.119 0.881 23 H 0.185 0.815 24 H 0.086 0.914 25 H 0.179 0.821 26 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -16.386 -2.673 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.190 4.190 3 Si 0.824 3.176 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.106 0.894 9 C 0.029 3.971 10 N -0.185 5.185 11 C -0.701 4.701 12 N -0.091 5.091 13 N -0.256 5.256 14 C -0.033 4.033 15 C -0.160 4.160 16 C -0.674 4.674 17 S 2.676 3.324 18 O -0.957 6.957 19 O -0.961 6.961 20 H 0.090 0.910 21 H 0.138 0.862 22 H 0.137 0.863 23 H 0.203 0.797 24 H 0.104 0.896 25 H 0.197 0.803 26 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.080 -15.784 -2.445 16.107 hybrid contribution 0.944 0.935 -0.039 1.329 sum -1.137 -14.850 -2.484 15.099 Atomic orbital electron populations 1.70151 1.09046 1.29570 1.35309 1.26934 0.95738 1.04711 0.91631 0.84883 0.78656 0.74781 0.79260 1.18674 1.19169 1.17664 1.18617 0.94529 0.87802 1.51695 0.89370 1.21690 0.86282 0.92373 0.96752 1.71462 1.16895 1.12346 1.17807 1.38250 1.13842 0.99791 1.18241 1.47379 1.02085 1.08826 1.50786 1.74333 1.17607 0.99881 1.33733 1.22381 1.02931 0.71891 1.06135 1.21881 0.88596 1.05611 0.99888 1.30163 1.10407 1.13549 1.13236 1.06412 0.71281 0.80318 0.74408 1.93528 1.77412 1.87948 1.36775 1.93517 1.69078 1.74684 1.58837 0.90961 0.86189 0.86266 0.79729 0.89575 0.80310 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -50.33 11.95 21.81 0.26 -50.06 15 2 C 0.03 1.57 5.49 85.23 0.47 2.04 15 3 Si 1.01 42.98 29.56 68.60 2.03 45.01 15 4 H -0.26 -10.69 7.11 99.48 0.71 -9.99 15 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.48 -29.96 9.49 23.44 0.22 -29.74 15 8 H 0.09 5.17 7.85 -2.91 -0.02 5.14 15 9 C 0.29 18.20 7.61 134.78 1.03 19.23 15 10 N -0.46 -28.49 9.62 -194.56 -1.87 -30.36 15 11 C -0.35 -17.05 7.73 180.37 1.39 -15.66 15 12 N -0.29 -12.47 3.73 -350.46 -1.31 -13.78 15 13 N -0.42 -22.62 12.17 -56.07 -0.68 -23.31 15 14 C 0.09 1.95 6.81 86.20 0.59 2.54 15 15 C -0.12 -1.51 5.76 30.53 0.18 -1.34 15 16 C -0.54 -6.96 6.62 72.15 0.48 -6.48 15 17 S 2.50 87.51 5.69 -56.49 -0.32 87.19 15 18 O -0.96 -39.33 17.97 -127.72 -2.30 -41.63 15 19 O -0.96 -41.40 17.97 -127.72 -2.30 -43.69 15 20 H 0.28 15.70 8.30 -92.71 -0.77 14.93 15 21 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.12 2.40 8.14 -2.39 -0.02 2.39 15 23 H 0.19 0.10 8.14 -2.39 -0.02 0.08 15 24 H 0.09 1.34 8.06 -2.39 -0.02 1.32 15 25 H 0.18 1.40 8.13 -2.39 -0.02 1.38 15 26 H 0.21 0.55 8.14 -2.39 -0.02 0.53 15 Total: -1.00 -101.00 244.40 -0.92 -101.93 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: 1.21 Total: -1.89 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.35 Total: -29.41 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.60 Total: -117.51 kcal Atomic # 8 Polarization: -80.73 SS G_CDS: -4.59 Total: -85.32 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 87.51 SS G_CDS: -0.32 Total: 87.19 kcal Total: -101.00 -0.92 -101.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215617490.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.161 kcal (2) G-P(sol) polarization free energy of solvation -101.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds