Wall clock time and date at job start Mon Mar 30 2020 04:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99895 * 2 1 4 4 C 1.53000 * 109.47116 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46964 * 60.61867 * 4 3 2 6 6 C 1.46893 * 111.00486 * 76.72173 * 5 4 3 7 7 C 1.50699 * 109.46955 * 279.06029 * 6 5 4 8 8 H 1.08000 * 120.00433 * 0.66424 * 7 6 5 9 9 C 1.37887 * 119.99822 * 180.66558 * 7 6 5 10 10 N 1.31509 * 120.00099 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99592 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47204 * 269.99719 * 11 9 7 13 13 H 1.48495 * 109.47587 * 30.00107 * 11 9 7 14 14 H 1.48506 * 109.47045 * 150.00205 * 11 9 7 15 15 C 1.46907 * 111.00021 * 200.67678 * 5 4 3 16 16 H 1.09002 * 110.43294 * 47.76769 * 15 5 4 17 17 C 1.54892 * 110.48345 * 285.23172 * 15 5 4 18 18 C 1.54893 * 102.74443 * 203.37659 * 17 15 5 19 19 C 1.54266 * 104.19492 * 37.94557 * 18 17 15 20 20 H 1.08998 * 110.03487 * 95.67364 * 19 18 17 21 21 N 1.46905 * 110.03108 * 217.05312 * 19 18 17 22 22 C 1.54089 * 106.62296 * 336.27306 * 19 18 17 23 23 H 1.09001 * 109.47061 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47652 * 300.00767 * 1 2 3 25 25 H 1.09004 * 109.47010 * 60.01028 * 1 2 3 26 26 H 1.08998 * 109.47467 * 59.99704 * 3 2 1 27 27 H 1.08996 * 109.46961 * 299.99229 * 3 2 1 28 28 H 1.08997 * 109.47325 * 300.61789 * 4 3 2 29 29 H 1.09002 * 109.47501 * 180.61429 * 4 3 2 30 30 H 1.08998 * 109.47316 * 159.05789 * 6 5 4 31 31 H 1.09000 * 109.47254 * 39.05504 * 6 5 4 32 32 H 0.97000 * 120.00078 * 359.97438 * 10 9 7 33 33 H 1.09001 * 110.75609 * 321.68939 * 17 15 5 34 34 H 1.08995 * 110.75863 * 84.88166 * 17 15 5 35 35 H 1.09007 * 110.48270 * 156.61769 * 18 17 15 36 36 H 1.08998 * 110.48564 * 279.13192 * 18 17 15 37 37 H 1.00895 * 111.00027 * 298.54838 * 21 19 18 38 38 H 1.00901 * 110.99430 * 62.49568 * 21 19 18 39 39 H 1.08997 * 110.16402 * 240.88610 * 22 19 18 40 40 H 1.09000 * 110.00169 * 119.38219 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9703 0.4684 -1.2059 6 6 3.9183 1.3430 -2.3850 7 6 2.5033 1.4091 -2.8992 8 1 1.7190 0.8652 -2.3937 9 6 2.2099 2.1640 -4.0152 10 7 3.1650 2.8258 -4.6310 11 14 0.4561 2.2453 -4.6530 12 1 0.2365 1.1559 -5.6380 13 1 -0.4906 2.0864 -3.5200 14 1 0.2280 3.5584 -5.3082 15 6 5.3152 -0.0952 -1.0275 16 1 5.3839 -0.6220 -0.0757 17 6 6.3858 1.0213 -1.1076 18 6 7.6625 0.2423 -1.5107 19 6 7.1570 -0.8243 -2.5040 20 1 7.2804 -0.4699 -3.5273 21 7 7.8964 -2.0794 -2.3140 22 6 5.6632 -1.0417 -2.1949 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8559 0.6344 0.8852 29 1 3.9788 2.1804 0.0117 30 1 4.5692 0.9436 -3.1627 31 1 4.2520 2.3436 -2.1102 32 1 4.0757 2.7833 -4.3000 33 1 6.1234 1.7541 -1.8707 34 1 6.5141 1.5038 -0.1387 35 1 8.3776 0.9068 -1.9957 36 1 8.1130 -0.2296 -0.6375 37 1 8.8813 -1.9491 -2.4905 38 1 7.7412 -2.4541 -1.3901 39 1 5.4869 -2.0766 -1.9017 40 1 5.0615 -0.7932 -3.0692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223177624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:00 Heat of formation + Delta-G solvation = -46.503151 kcal Electronic energy + Delta-G solvation = -18828.661545 eV Core-core repulsion = 16064.112280 eV Total energy + Delta-G solvation = -2764.549265 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.05758 -37.19666 -35.38942 -32.79420 -31.52350 -29.14496 -27.76888 -26.72575 -25.63947 -24.41707 -22.57917 -21.18829 -19.86572 -18.78328 -17.08906 -16.27984 -15.82922 -15.39196 -15.06535 -14.57461 -14.29932 -13.73818 -13.60563 -13.32136 -13.06327 -12.89010 -12.11675 -12.02286 -11.64988 -11.35185 -11.25298 -11.08765 -10.83603 -10.79791 -10.60147 -10.49077 -10.37158 -10.13373 -9.91974 -9.74909 -8.86104 -8.61721 -8.55159 -8.27585 -7.18331 -6.29472 -3.97420 3.44500 3.47402 3.62665 4.48814 4.53951 4.63392 4.73319 4.94639 5.09659 5.39590 5.43062 5.65915 5.69241 5.73064 5.83447 5.84572 5.90140 5.92747 5.97875 6.02055 6.04813 6.13781 6.20610 6.23426 6.33193 6.52387 6.65040 6.76226 6.82649 7.05574 7.09788 7.28929 7.53898 7.87585 7.96573 8.15531 8.37479 8.71455 8.94353 9.71028 11.07165 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.008468 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.754849 B = 3305.701238 C = 4201.575945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.371 6.371 3 C 0.057 3.943 4 C 0.074 3.926 5 N -0.511 5.511 6 C 0.180 3.820 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.011 3.989 10 N -0.918 5.918 11 Si 1.069 2.931 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.287 1.287 15 C 0.083 3.917 16 H 0.070 0.930 17 C -0.160 4.160 18 C -0.152 4.152 19 C 0.086 3.914 20 H 0.081 0.919 21 N -0.843 5.843 22 C -0.109 4.109 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.040 0.960 26 H 0.025 0.975 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.024 0.976 31 H -0.019 1.019 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.334 0.666 38 H 0.337 0.663 39 H 0.068 0.932 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 -4.378 8.875 10.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C -0.020 4.020 4 C -0.055 4.055 5 N -0.233 5.233 6 C 0.055 3.945 7 C -0.619 4.619 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.555 5.555 11 Si 0.898 3.102 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.212 1.212 15 C -0.027 4.027 16 H 0.088 0.912 17 C -0.200 4.200 18 C -0.192 4.192 19 C -0.026 4.026 20 H 0.099 0.901 21 N -0.371 5.371 22 C -0.147 4.147 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.042 0.958 31 H -0.001 1.001 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.087 0.913 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.542 -4.573 7.002 8.741 hybrid contribution 1.923 0.870 2.144 3.009 sum 4.465 -3.704 9.147 10.831 Atomic orbital electron populations 1.22605 0.82954 1.01554 0.99220 1.87924 1.17820 1.28032 1.95182 1.22862 0.93550 0.85039 1.00536 1.21884 0.94235 0.96212 0.93128 1.62087 1.20874 1.37011 1.03335 1.19952 0.98280 0.88740 0.87540 1.22203 0.94070 1.31524 1.14081 0.91408 1.25779 1.05572 0.93709 0.94168 1.70760 1.02060 1.41162 1.41487 0.83537 0.74371 0.76476 0.75808 1.21453 1.21609 1.21249 1.22583 0.87982 0.94278 0.97823 0.91188 1.23237 0.95946 0.99533 1.01250 1.23111 0.97960 0.99021 0.99144 1.22175 0.94294 0.87399 0.98686 0.90127 1.58984 1.13859 1.29197 1.35035 1.22258 0.93471 0.99335 0.99675 0.90647 0.95513 0.94128 0.95661 0.89218 0.92561 0.94494 0.95836 1.00113 0.92405 0.90331 0.92604 0.92264 0.92307 0.85392 0.85017 0.91293 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.37 -7.57 10.27 -35.23 -0.36 -7.93 16 3 C 0.06 1.13 5.38 37.16 0.20 1.33 16 4 C 0.07 1.44 5.10 -3.82 -0.02 1.42 16 5 N -0.51 -10.94 4.26 -226.10 -0.96 -11.90 16 6 C 0.18 4.48 2.38 -4.98 -0.01 4.47 16 7 C -0.58 -15.94 7.33 -34.44 -0.25 -16.19 16 8 H 0.07 1.89 5.92 -52.49 -0.31 1.58 16 9 C 0.01 0.31 5.46 -17.82 -0.10 0.21 16 10 N -0.92 -27.53 13.65 55.43 0.76 -26.77 16 11 Si 1.07 25.30 29.90 -169.99 -5.08 20.21 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.08 1.49 2.87 -66.05 -0.19 1.30 16 16 H 0.07 1.18 7.81 -51.93 -0.41 0.78 16 17 C -0.16 -2.64 5.88 -24.73 -0.15 -2.78 16 18 C -0.15 -2.10 6.51 -25.07 -0.16 -2.26 16 19 C 0.09 1.28 4.05 -66.48 -0.27 1.02 16 20 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 21 N -0.84 -10.56 9.14 -3.62 -0.03 -10.60 16 22 C -0.11 -1.93 5.88 -25.50 -0.15 -2.08 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 2.05 5.24 -51.93 -0.27 1.78 16 28 H 0.06 0.99 7.71 -51.93 -0.40 0.59 16 29 H 0.04 0.72 7.65 -51.93 -0.40 0.32 16 30 H 0.02 0.62 5.71 -51.93 -0.30 0.33 16 31 H -0.02 -0.49 6.79 -51.93 -0.35 -0.84 16 32 H 0.27 7.94 7.22 -40.82 -0.29 7.65 16 33 H 0.08 1.50 5.96 -51.93 -0.31 1.20 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 37 H 0.33 3.51 9.06 -39.29 -0.36 3.15 16 38 H 0.34 3.83 8.93 -39.29 -0.35 3.48 16 39 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 40 H 0.09 1.81 6.28 -51.93 -0.33 1.48 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -30.11 307.60 -7.69 -37.80 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.65 Total: 6.45 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 0.01 Total: -11.90 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.24 Total: -49.27 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.36 Total: -7.93 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.11 -7.69 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223177624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.706 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds