Wall clock time and date at job start Mon Mar 30 2020 04:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99895 * 2 1 4 4 C 1.53000 * 109.47116 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46964 * 60.61867 * 4 3 2 6 6 C 1.46893 * 111.00486 * 76.72173 * 5 4 3 7 7 C 1.50699 * 109.46955 * 279.06029 * 6 5 4 8 8 H 1.08000 * 120.00433 * 0.66424 * 7 6 5 9 9 C 1.37887 * 119.99822 * 180.66558 * 7 6 5 10 10 N 1.31509 * 120.00099 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99592 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47204 * 269.99719 * 11 9 7 13 13 H 1.48495 * 109.47587 * 30.00107 * 11 9 7 14 14 H 1.48506 * 109.47045 * 150.00205 * 11 9 7 15 15 C 1.46907 * 111.00021 * 200.67678 * 5 4 3 16 16 H 1.09002 * 110.43294 * 47.76769 * 15 5 4 17 17 C 1.54892 * 110.48345 * 285.23172 * 15 5 4 18 18 C 1.54893 * 102.74443 * 203.37659 * 17 15 5 19 19 C 1.54266 * 104.19492 * 37.94557 * 18 17 15 20 20 H 1.08998 * 110.03487 * 95.67364 * 19 18 17 21 21 N 1.46905 * 110.03108 * 217.05312 * 19 18 17 22 22 C 1.54089 * 106.62296 * 336.27306 * 19 18 17 23 23 H 1.09001 * 109.47061 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47652 * 300.00767 * 1 2 3 25 25 H 1.09004 * 109.47010 * 60.01028 * 1 2 3 26 26 H 1.08998 * 109.47467 * 59.99704 * 3 2 1 27 27 H 1.08996 * 109.46961 * 299.99229 * 3 2 1 28 28 H 1.08997 * 109.47325 * 300.61789 * 4 3 2 29 29 H 1.09002 * 109.47501 * 180.61429 * 4 3 2 30 30 H 1.08998 * 109.47316 * 159.05789 * 6 5 4 31 31 H 1.09000 * 109.47254 * 39.05504 * 6 5 4 32 32 H 0.97000 * 120.00078 * 359.97438 * 10 9 7 33 33 H 1.09001 * 110.75609 * 321.68939 * 17 15 5 34 34 H 1.08995 * 110.75863 * 84.88166 * 17 15 5 35 35 H 1.09007 * 110.48270 * 156.61769 * 18 17 15 36 36 H 1.08998 * 110.48564 * 279.13192 * 18 17 15 37 37 H 1.00895 * 111.00027 * 298.54838 * 21 19 18 38 38 H 1.00901 * 110.99430 * 62.49568 * 21 19 18 39 39 H 1.08997 * 110.16402 * 240.88610 * 22 19 18 40 40 H 1.09000 * 110.00169 * 119.38219 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9703 0.4684 -1.2059 6 6 3.9183 1.3430 -2.3850 7 6 2.5033 1.4091 -2.8992 8 1 1.7190 0.8652 -2.3937 9 6 2.2099 2.1640 -4.0152 10 7 3.1650 2.8258 -4.6310 11 14 0.4561 2.2453 -4.6530 12 1 0.2365 1.1559 -5.6380 13 1 -0.4906 2.0864 -3.5200 14 1 0.2280 3.5584 -5.3082 15 6 5.3152 -0.0952 -1.0275 16 1 5.3839 -0.6220 -0.0757 17 6 6.3858 1.0213 -1.1076 18 6 7.6625 0.2423 -1.5107 19 6 7.1570 -0.8243 -2.5040 20 1 7.2804 -0.4699 -3.5273 21 7 7.8964 -2.0794 -2.3140 22 6 5.6632 -1.0417 -2.1949 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8559 0.6344 0.8852 29 1 3.9788 2.1804 0.0117 30 1 4.5692 0.9436 -3.1627 31 1 4.2520 2.3436 -2.1102 32 1 4.0757 2.7833 -4.3000 33 1 6.1234 1.7541 -1.8707 34 1 6.5141 1.5038 -0.1387 35 1 8.3776 0.9068 -1.9957 36 1 8.1130 -0.2296 -0.6375 37 1 8.8813 -1.9491 -2.4905 38 1 7.7412 -2.4541 -1.3901 39 1 5.4869 -2.0766 -1.9017 40 1 5.0615 -0.7932 -3.0692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223177624.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:59 Heat of formation + Delta-G solvation = -69.430161 kcal Electronic energy + Delta-G solvation = -18829.655734 eV Core-core repulsion = 16064.112280 eV Total energy + Delta-G solvation = -2765.543454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53017 -38.66301 -36.91756 -34.83836 -32.82908 -30.61844 -29.34719 -28.45327 -26.99279 -25.95385 -24.53349 -22.69140 -21.18860 -20.33708 -19.03435 -17.74084 -17.34317 -16.78399 -16.45567 -16.05335 -15.74452 -15.59778 -15.09012 -14.98410 -14.56642 -14.32970 -13.61562 -13.41763 -13.21776 -13.14954 -12.83313 -12.76399 -12.40013 -12.27841 -12.09636 -11.98998 -11.95667 -11.75114 -11.45816 -11.34470 -10.71487 -10.52727 -10.27931 -9.59526 -8.93057 -8.53585 -6.24104 1.50832 1.59382 1.76336 2.56821 3.03050 3.17476 3.22689 3.53155 3.67180 3.80269 4.11223 4.26684 4.30258 4.40894 4.44910 4.52122 4.54541 4.59556 4.59809 4.64223 4.67763 4.77851 4.86512 4.88938 4.90934 4.95489 5.00969 5.19672 5.28686 5.29649 5.38971 5.99631 6.13019 6.24396 6.41050 6.57390 6.59174 6.66205 6.77936 7.52397 8.80316 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.008468 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.754849 B = 3305.701238 C = 4201.575945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.394 6.394 3 C 0.060 3.940 4 C 0.072 3.928 5 N -0.524 5.524 6 C 0.202 3.798 7 C -0.581 4.581 8 H 0.063 0.937 9 C -0.041 4.041 10 N -0.944 5.944 11 Si 1.111 2.889 12 H -0.279 1.279 13 H -0.268 1.268 14 H -0.285 1.285 15 C 0.080 3.920 16 H 0.093 0.907 17 C -0.155 4.155 18 C -0.138 4.138 19 C 0.095 3.905 20 H 0.062 0.938 21 N -0.842 5.842 22 C -0.105 4.105 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.001 0.999 31 H -0.041 1.041 32 H 0.252 0.748 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.350 0.650 38 H 0.348 0.652 39 H 0.074 0.926 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -5.424 10.747 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.056 4.056 5 N -0.247 5.247 6 C 0.076 3.924 7 C -0.619 4.619 8 H 0.081 0.919 9 C -0.238 4.238 10 N -0.583 5.583 11 Si 0.934 3.066 12 H -0.205 1.205 13 H -0.193 1.193 14 H -0.211 1.211 15 C -0.029 4.029 16 H 0.111 0.889 17 C -0.195 4.195 18 C -0.178 4.178 19 C -0.018 4.018 20 H 0.080 0.920 21 N -0.373 5.373 22 C -0.144 4.144 23 H 0.114 0.886 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.019 0.981 31 H -0.024 1.024 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.667 -5.641 8.903 10.872 hybrid contribution 1.890 1.132 1.629 2.740 sum 4.557 -4.509 10.532 12.330 Atomic orbital electron populations 1.22799 0.81094 1.03138 0.99729 1.87875 1.19961 1.28160 1.95306 1.22746 0.93764 0.84984 1.00188 1.21971 0.94254 0.96375 0.93036 1.61999 1.23449 1.36226 1.03005 1.19534 0.96320 0.88015 0.88536 1.22499 0.95181 1.30523 1.13693 0.91883 1.27167 1.08558 0.93307 0.94746 1.70888 1.01867 1.43058 1.42478 0.83000 0.70665 0.76707 0.76209 1.20460 1.19323 1.21074 1.22716 0.86699 0.94708 0.98746 0.88890 1.23118 0.96906 0.98551 1.00940 1.23046 0.96695 0.98307 0.99788 1.21920 0.92828 0.88905 0.98129 0.91998 1.58857 1.14787 1.27681 1.35966 1.22167 0.94914 0.99505 0.97786 0.88626 0.92830 0.95698 0.92589 0.92901 0.89887 0.94700 0.98072 1.02376 0.93865 0.93939 0.91033 0.91425 0.89461 0.83665 0.83785 0.90745 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -15.50 10.27 -148.98 -1.53 -17.03 16 3 C 0.06 2.32 5.38 71.98 0.39 2.71 16 4 C 0.07 2.73 5.10 86.30 0.44 3.17 16 5 N -0.52 -22.59 4.26 -869.23 -3.70 -26.30 16 6 C 0.20 10.50 2.38 85.56 0.20 10.70 16 7 C -0.58 -32.87 7.33 25.60 0.19 -32.68 16 8 H 0.06 3.59 5.92 -2.91 -0.02 3.57 16 9 C -0.04 -2.38 5.46 84.66 0.46 -1.92 16 10 N -0.94 -58.68 13.65 21.45 0.29 -58.39 16 11 Si 1.11 51.40 29.90 68.60 2.05 53.45 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 C 0.08 2.82 2.87 45.99 0.13 2.95 16 16 H 0.09 2.87 7.81 -2.39 -0.02 2.85 16 17 C -0.16 -5.01 5.88 31.89 0.19 -4.82 16 18 C -0.14 -3.52 6.51 31.67 0.21 -3.32 16 19 C 0.09 2.73 4.05 45.71 0.19 2.92 16 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 21 N -0.84 -19.23 9.14 -165.37 -1.51 -20.74 16 22 C -0.11 -3.74 5.88 31.39 0.18 -3.55 16 23 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 2.44 5.24 -2.39 -0.01 2.42 16 28 H 0.08 2.70 7.71 -2.39 -0.02 2.69 16 29 H 0.03 1.34 7.65 -2.39 -0.02 1.32 16 30 H 0.00 0.08 5.71 -2.39 -0.01 0.06 16 31 H -0.04 -2.29 6.79 -2.39 -0.02 -2.31 16 32 H 0.25 15.90 7.22 -92.71 -0.67 15.23 16 33 H 0.04 1.68 5.96 -2.39 -0.01 1.66 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.09 1.78 8.04 -2.39 -0.02 1.76 16 37 H 0.35 6.39 9.06 -89.70 -0.81 5.57 16 38 H 0.35 6.83 8.93 -89.69 -0.80 6.03 16 39 H 0.07 2.50 7.89 -2.39 -0.02 2.48 16 40 H 0.04 1.81 6.28 -2.39 -0.01 1.79 16 Total: -1.00 -67.04 307.60 -1.06 -68.10 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.48 Total: 22.61 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 3.82 Total: -21.70 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.92 Total: -105.43 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -1.53 Total: -17.03 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -67.04 -1.06 -68.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223177624.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.331 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds