Wall clock time and date at job start Mon Mar 30 2020 04:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99717 * 2 1 4 4 H 1.09001 * 109.57545 * 329.84152 * 3 2 1 5 5 C 1.53123 * 109.52031 * 89.99949 * 3 2 1 6 6 C 1.53040 * 109.27714 * 177.55605 * 5 3 2 7 7 N 1.46841 * 109.52490 * 300.82333 * 6 5 3 8 8 C 1.46902 * 111.00099 * 185.83577 * 7 6 5 9 9 C 1.53002 * 109.46780 * 68.13561 * 8 7 6 10 10 C 1.50701 * 109.47195 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99798 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00387 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99992 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00240 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47017 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47024 * 119.99523 * 14 12 10 17 17 H 1.48500 * 109.46980 * 239.99194 * 14 12 10 18 18 C 1.46845 * 111.19954 * 61.73882 * 7 6 5 19 19 H 1.08999 * 109.46157 * 58.27567 * 18 7 6 20 20 C 1.53005 * 109.46432 * 178.24345 * 18 7 6 21 21 N 1.46897 * 109.47039 * 54.09691 * 20 18 7 22 22 C 1.53039 * 109.52692 * 298.25841 * 18 7 6 23 23 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47072 * 299.99911 * 1 2 3 25 25 H 1.08995 * 109.46863 * 60.00236 * 1 2 3 26 26 H 1.09003 * 109.50426 * 57.62147 * 5 3 2 27 27 H 1.08996 * 109.50297 * 297.49520 * 5 3 2 28 28 H 1.08997 * 109.45913 * 60.83732 * 6 5 3 29 29 H 1.08994 * 109.46626 * 180.80561 * 6 5 3 30 30 H 1.09000 * 109.46963 * 188.12982 * 8 7 6 31 31 H 1.08994 * 109.47075 * 308.13587 * 8 7 6 32 32 H 1.09000 * 109.46900 * 299.99459 * 9 8 7 33 33 H 1.08997 * 109.47783 * 60.00056 * 9 8 7 34 34 H 0.96995 * 120.00291 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47539 * 174.10452 * 20 18 7 36 36 H 1.09008 * 109.46964 * 294.10106 * 20 18 7 37 37 H 1.00906 * 110.99517 * 61.68713 * 21 20 18 38 38 H 1.00906 * 110.99892 * 185.63452 * 21 20 18 39 39 H 1.08996 * 109.50533 * 179.12090 * 22 18 7 40 40 H 1.08995 * 109.50068 * 299.20161 * 22 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3475 2.0003 -0.5160 5 6 2.2183 1.7730 1.4432 6 6 2.8964 3.1449 1.4372 7 7 4.1871 3.0513 0.7431 8 6 4.9288 4.3158 0.8380 9 6 5.3621 4.5453 2.2873 10 6 6.1225 5.8427 2.3848 11 1 6.2811 6.4434 1.5013 12 6 6.6164 6.2626 3.6016 13 7 6.4237 5.5310 4.6774 14 14 7.5595 7.8705 3.7223 15 1 7.6389 8.4998 2.3796 16 1 6.8588 8.7863 4.6581 17 1 8.9310 7.6034 4.2252 18 6 4.0086 2.6497 -0.6581 19 1 3.3654 3.3703 -1.1632 20 6 5.3708 2.6072 -1.3537 21 7 6.2832 1.7447 -0.5912 22 6 3.3637 1.2630 -0.7146 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.8496 1.0574 1.9701 27 1 1.2533 1.8463 1.9447 28 1 2.2584 3.8630 0.9222 29 1 3.0590 3.4742 2.4634 30 1 5.8101 4.2688 0.1983 31 1 4.2891 5.1372 0.5156 32 1 4.4808 4.5922 2.9269 33 1 6.0018 3.7238 2.6098 34 1 6.7709 5.8265 5.5335 35 1 5.2519 2.2094 -2.3615 36 1 5.7831 3.6149 -1.4071 37 1 5.9365 0.7979 -0.5507 38 1 7.2148 1.7724 -0.9780 39 1 3.2172 0.9720 -1.7547 40 1 4.0133 0.5393 -0.2223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226421551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:46 Heat of formation + Delta-G solvation = -47.569540 kcal Electronic energy + Delta-G solvation = -18431.261536 eV Core-core repulsion = 15666.666030 eV Total energy + Delta-G solvation = -2764.595507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49071 -37.37855 -34.26049 -33.43853 -32.01053 -30.04124 -28.91180 -26.73846 -25.12600 -24.46285 -22.94766 -21.00399 -20.12419 -19.11024 -16.65008 -16.32610 -15.87678 -15.43738 -15.33483 -14.83234 -14.48110 -14.18140 -13.61349 -13.55385 -13.16506 -12.89486 -12.43127 -12.23315 -11.99688 -11.73896 -11.46921 -11.10797 -10.98330 -10.89364 -10.79724 -10.58165 -10.42057 -10.16353 -9.65516 -9.44340 -9.16800 -8.96507 -8.22916 -8.21217 -7.48872 -5.90506 -3.91878 3.35924 3.43149 3.46958 3.72607 4.37984 4.57243 4.85847 4.94353 4.99033 5.09371 5.24547 5.28852 5.32383 5.45375 5.50619 5.53564 5.58305 5.63083 5.74056 5.83885 6.01790 6.04461 6.10438 6.32752 6.37499 6.44789 6.62132 6.68882 7.16981 7.21922 7.44894 7.69570 7.75048 7.80104 7.94088 8.07290 8.25540 8.55713 9.16312 9.70865 11.20983 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.005425 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.753584 B = 5160.238268 C = 5710.019749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.090 3.910 4 H 0.052 0.948 5 C -0.134 4.134 6 C 0.056 3.944 7 N -0.510 5.510 8 C 0.067 3.933 9 C 0.032 3.968 10 C -0.517 4.517 11 H 0.052 0.948 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.088 3.912 19 H 0.033 0.967 20 C 0.071 3.929 21 N -0.824 5.824 22 C -0.106 4.106 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.028 0.972 34 H 0.258 0.742 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.336 0.664 38 H 0.334 0.666 39 H 0.061 0.939 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -9.279 -11.894 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.033 3.967 4 H 0.070 0.930 5 C -0.173 4.173 6 C -0.072 4.072 7 N -0.235 5.235 8 C -0.060 4.060 9 C -0.006 4.006 10 C -0.556 4.556 11 H 0.070 0.930 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.717 3.283 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.022 4.022 19 H 0.050 0.950 20 C -0.060 4.060 21 N -0.354 5.354 22 C -0.144 4.144 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.748 -9.318 -10.872 16.780 hybrid contribution -0.164 1.283 -1.101 1.699 sum -8.913 -8.035 -11.972 16.951 Atomic orbital electron populations 1.22734 0.81676 1.02301 0.99770 1.87905 1.19148 1.28374 1.95123 1.22222 0.94468 0.83722 0.96292 0.92957 1.22076 1.00412 0.98413 0.96359 1.22074 0.89698 0.94488 1.00981 1.61926 1.17056 1.33874 1.10644 1.22334 0.95849 0.85637 1.02150 1.19044 0.96208 0.96408 0.88915 1.21249 1.34507 1.05977 0.93838 0.93003 1.24975 0.96385 0.97009 0.95937 1.69989 1.46336 1.37846 0.99121 0.86591 0.79799 0.83980 0.77920 1.19880 1.21169 1.21052 1.21564 0.94902 0.94819 0.90880 0.94966 1.21808 0.92938 0.98506 0.92764 1.58396 1.04430 1.13933 1.58662 1.21663 0.95084 0.98134 0.99538 0.89966 0.94100 0.94452 0.90084 0.92176 0.96179 0.89190 0.91120 0.97292 0.97015 0.95340 0.93197 0.96179 0.90540 0.85066 0.85376 0.92027 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.41 16 2 O -0.39 -5.14 10.35 -35.23 -0.36 -5.51 16 3 C 0.09 1.21 2.68 -26.61 -0.07 1.14 16 4 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 5 C -0.13 -1.99 5.71 -26.65 -0.15 -2.15 16 6 C 0.06 0.97 5.30 -3.84 -0.02 0.95 16 7 N -0.51 -9.39 4.18 -226.69 -0.95 -10.33 16 8 C 0.07 1.44 4.65 -3.82 -0.02 1.42 16 9 C 0.03 0.84 4.95 -27.88 -0.14 0.71 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 11 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 14 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 C 0.09 1.32 2.21 -67.72 -0.15 1.17 16 19 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 20 C 0.07 0.98 5.72 -3.82 -0.02 0.96 16 21 N -0.82 -11.65 9.27 -10.37 -0.10 -11.75 16 22 C -0.11 -1.42 4.83 -26.65 -0.13 -1.55 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.38 7.94 -51.93 -0.41 -0.03 16 25 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 1.77 6.31 -51.93 -0.33 1.44 16 30 H 0.07 1.52 5.66 -51.93 -0.29 1.23 16 31 H 0.01 0.19 8.10 -51.93 -0.42 -0.23 16 32 H 0.01 0.33 6.51 -51.93 -0.34 -0.01 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 1.15 6.42 -51.92 -0.33 0.81 16 37 H 0.34 4.31 7.48 -39.29 -0.29 4.02 16 38 H 0.33 4.10 9.08 -39.29 -0.36 3.74 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.18 6.80 -51.93 -0.35 0.83 16 LS Contribution 310.55 15.07 4.68 4.68 Total: -1.00 -31.49 310.55 -7.90 -39.39 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -6.87 Total: 2.79 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.02 Total: -9.58 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.31 Total: -48.76 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.36 Total: -5.51 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.49 -7.90 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226421551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.182 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds