Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99717 * 2 1 4 4 H 1.09001 * 109.57545 * 329.84152 * 3 2 1 5 5 C 1.53123 * 109.52031 * 89.99949 * 3 2 1 6 6 C 1.53040 * 109.27714 * 177.55605 * 5 3 2 7 7 N 1.46841 * 109.52490 * 300.82333 * 6 5 3 8 8 C 1.46902 * 111.00099 * 185.83577 * 7 6 5 9 9 C 1.53002 * 109.46780 * 68.13561 * 8 7 6 10 10 C 1.50701 * 109.47195 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99798 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00387 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99992 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00240 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47017 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47024 * 119.99523 * 14 12 10 17 17 H 1.48500 * 109.46980 * 239.99194 * 14 12 10 18 18 C 1.46845 * 111.19954 * 61.73882 * 7 6 5 19 19 H 1.08999 * 109.46157 * 58.27567 * 18 7 6 20 20 C 1.53005 * 109.46432 * 178.24345 * 18 7 6 21 21 N 1.46897 * 109.47039 * 54.09691 * 20 18 7 22 22 C 1.53039 * 109.52692 * 298.25841 * 18 7 6 23 23 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47072 * 299.99911 * 1 2 3 25 25 H 1.08995 * 109.46863 * 60.00236 * 1 2 3 26 26 H 1.09003 * 109.50426 * 57.62147 * 5 3 2 27 27 H 1.08996 * 109.50297 * 297.49520 * 5 3 2 28 28 H 1.08997 * 109.45913 * 60.83732 * 6 5 3 29 29 H 1.08994 * 109.46626 * 180.80561 * 6 5 3 30 30 H 1.09000 * 109.46963 * 188.12982 * 8 7 6 31 31 H 1.08994 * 109.47075 * 308.13587 * 8 7 6 32 32 H 1.09000 * 109.46900 * 299.99459 * 9 8 7 33 33 H 1.08997 * 109.47783 * 60.00056 * 9 8 7 34 34 H 0.96995 * 120.00291 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47539 * 174.10452 * 20 18 7 36 36 H 1.09008 * 109.46964 * 294.10106 * 20 18 7 37 37 H 1.00906 * 110.99517 * 61.68713 * 21 20 18 38 38 H 1.00906 * 110.99892 * 185.63452 * 21 20 18 39 39 H 1.08996 * 109.50533 * 179.12090 * 22 18 7 40 40 H 1.08995 * 109.50068 * 299.20161 * 22 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3475 2.0003 -0.5160 5 6 2.2183 1.7730 1.4432 6 6 2.8964 3.1449 1.4372 7 7 4.1871 3.0513 0.7431 8 6 4.9288 4.3158 0.8380 9 6 5.3621 4.5453 2.2873 10 6 6.1225 5.8427 2.3848 11 1 6.2811 6.4434 1.5013 12 6 6.6164 6.2626 3.6016 13 7 6.4237 5.5310 4.6774 14 14 7.5595 7.8705 3.7223 15 1 7.6389 8.4998 2.3796 16 1 6.8588 8.7863 4.6581 17 1 8.9310 7.6034 4.2252 18 6 4.0086 2.6497 -0.6581 19 1 3.3654 3.3703 -1.1632 20 6 5.3708 2.6072 -1.3537 21 7 6.2832 1.7447 -0.5912 22 6 3.3637 1.2630 -0.7146 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 2.8496 1.0574 1.9701 27 1 1.2533 1.8463 1.9447 28 1 2.2584 3.8630 0.9222 29 1 3.0590 3.4742 2.4634 30 1 5.8101 4.2688 0.1983 31 1 4.2891 5.1372 0.5156 32 1 4.4808 4.5922 2.9269 33 1 6.0018 3.7238 2.6098 34 1 6.7709 5.8265 5.5335 35 1 5.2519 2.2094 -2.3615 36 1 5.7831 3.6149 -1.4071 37 1 5.9365 0.7979 -0.5507 38 1 7.2148 1.7724 -0.9780 39 1 3.2172 0.9720 -1.7547 40 1 4.0133 0.5393 -0.2223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226421551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = -71.493867 kcal Electronic energy + Delta-G solvation = -18432.298973 eV Core-core repulsion = 15666.666030 eV Total energy + Delta-G solvation = -2765.632943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.71437 -38.49140 -35.76983 -35.07329 -33.70323 -31.24204 -30.71664 -27.76249 -26.39704 -26.08757 -24.50583 -22.31726 -21.74813 -20.41382 -18.52946 -17.59279 -17.02081 -16.76503 -16.54494 -16.41199 -15.83438 -15.51129 -15.05182 -14.90033 -14.46827 -14.26069 -13.89148 -13.75738 -13.42190 -13.08715 -12.91482 -12.71826 -12.64737 -12.39091 -12.12901 -12.07755 -11.80767 -11.51868 -11.39391 -11.16805 -11.07228 -10.53076 -10.37049 -9.27378 -8.96668 -8.15612 -6.26441 1.40835 1.41815 1.54837 2.42793 2.78065 3.06938 3.17604 3.75837 3.82373 3.89164 4.00895 4.16622 4.32681 4.36084 4.45014 4.49710 4.53769 4.57381 4.61952 4.69285 4.77159 4.86258 4.87144 4.97189 4.99411 5.08418 5.20557 5.24321 5.34963 5.53262 5.78263 5.87761 6.20663 6.28379 6.35393 6.45569 6.59027 6.81529 6.91968 7.42186 8.96908 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032598 B = 0.005425 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.753584 B = 5160.238268 C = 5710.019749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.095 3.905 4 H 0.067 0.933 5 C -0.126 4.126 6 C 0.057 3.943 7 N -0.522 5.522 8 C 0.086 3.914 9 C 0.043 3.957 10 C -0.539 4.539 11 H 0.058 0.942 12 C 0.001 3.999 13 N -0.933 5.933 14 Si 0.965 3.035 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.086 3.914 19 H 0.041 0.959 20 C 0.073 3.927 21 N -0.845 5.845 22 C -0.099 4.099 23 H 0.099 0.901 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.007 0.993 32 H -0.014 1.014 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.343 0.657 38 H 0.343 0.657 39 H 0.086 0.914 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 -9.094 -13.766 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.038 3.962 4 H 0.085 0.915 5 C -0.165 4.165 6 C -0.071 4.071 7 N -0.247 5.247 8 C -0.041 4.041 9 C 0.005 3.995 10 C -0.578 4.578 11 H 0.076 0.924 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.023 4.023 19 H 0.059 0.941 20 C -0.058 4.058 21 N -0.377 5.377 22 C -0.137 4.137 23 H 0.117 0.883 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.005 0.995 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.105 0.895 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.304 -9.151 -12.766 18.256 hybrid contribution -0.050 1.156 -0.494 1.258 sum -9.354 -7.995 -13.260 18.090 Atomic orbital electron populations 1.22968 0.79868 1.03780 1.00607 1.87885 1.21167 1.27952 1.95132 1.22116 0.94942 0.84345 0.94817 0.91510 1.21984 1.00310 0.96126 0.98030 1.22005 0.89706 0.96394 0.99011 1.61807 1.17568 1.31832 1.13489 1.21920 0.96432 0.87362 0.98381 1.18841 0.94226 0.94528 0.91872 1.21661 1.34936 1.06831 0.94337 0.92399 1.25953 0.97294 1.01025 0.95417 1.70135 1.47383 1.40007 0.99828 0.85399 0.78142 0.78980 0.78489 1.18522 1.20414 1.20406 1.21708 0.96161 0.95921 0.88499 0.94114 1.21775 0.92003 0.97928 0.94085 1.58370 1.05273 1.14557 1.59501 1.21595 0.94678 0.96497 1.00916 0.88297 0.93833 0.93006 0.92043 0.90689 0.95249 0.92701 0.90873 0.97454 0.99544 0.99194 0.92908 0.93021 0.91969 0.84292 0.84335 0.89526 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.82 113.37 1.23 1.63 16 2 O -0.40 -9.77 10.35 -148.98 -1.54 -11.31 16 3 C 0.10 2.36 2.68 30.68 0.08 2.44 16 4 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 5 C -0.13 -3.69 5.71 30.65 0.18 -3.52 16 6 C 0.06 2.02 5.30 86.33 0.46 2.48 16 7 N -0.52 -19.37 4.18 -871.13 -3.64 -23.01 16 8 C 0.09 3.81 4.65 86.30 0.40 4.21 16 9 C 0.04 2.39 4.95 29.85 0.15 2.54 16 10 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -58.73 13.29 21.45 0.28 -58.45 16 14 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 15 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 C 0.09 2.44 2.21 44.94 0.10 2.54 16 19 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 20 C 0.07 1.90 5.72 86.31 0.49 2.39 16 21 N -0.85 -23.18 9.27 -186.71 -1.73 -24.91 16 22 C -0.10 -2.42 4.83 30.65 0.15 -2.27 16 23 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.04 0.71 7.94 -2.39 -0.02 0.69 16 25 H 0.05 0.74 8.09 -2.39 -0.02 0.72 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 1.94 7.94 -2.39 -0.02 1.92 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 2.30 6.31 -2.39 -0.02 2.28 16 30 H 0.07 3.18 5.66 -2.39 -0.01 3.17 16 31 H 0.01 0.32 8.10 -2.39 -0.02 0.30 16 32 H -0.01 -0.83 6.51 -2.39 -0.02 -0.84 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.79 6.42 -2.38 -0.02 1.77 16 37 H 0.34 8.45 7.48 -89.69 -0.67 7.78 16 38 H 0.34 8.13 9.08 -89.69 -0.81 7.32 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.94 6.80 -2.39 -0.02 1.92 16 Total: -1.00 -68.93 310.55 -1.14 -70.06 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.46 Total: 18.85 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.93 Total: -18.61 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -5.08 Total: -106.37 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -1.54 Total: -11.31 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -68.93 -1.14 -70.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226421551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.429 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds