Wall clock time and date at job start Mon Mar 30 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48504 * 109.47002 * 270.00228 * 3 2 1 5 5 H 1.48496 * 109.47130 * 29.99916 * 3 2 1 6 6 H 1.48499 * 109.47193 * 150.00281 * 3 2 1 7 7 C 1.40035 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00474 * 163.67655 * 7 2 1 9 9 C 1.41481 * 119.99304 * 343.95351 * 7 2 1 10 10 C 1.41168 * 121.01218 * 335.11995 * 9 7 2 11 11 C 1.36530 * 119.11772 * 179.72564 * 10 9 7 12 12 N 1.32125 * 121.27655 * 0.57202 * 11 10 9 13 13 C 1.32336 * 122.25887 * 359.70616 * 12 11 10 14 14 O 1.35717 * 119.64575 * 180.02562 * 13 12 11 15 15 C 1.38666 * 120.71228 * 0.02562 * 13 12 11 16 16 Br 1.89095 * 120.67503 * 180.02562 * 15 13 12 17 17 H 0.97003 * 119.99989 * 0.02562 * 1 2 3 18 18 H 1.07998 * 120.44356 * 0.02562 * 10 9 7 19 19 H 1.08000 * 119.36354 * 180.29719 * 11 10 9 20 20 H 0.96708 * 113.99830 * 269.97528 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4402 0.7000 7 6 2.0077 -1.2127 -0.0005 8 1 3.0551 -1.2314 -0.2634 9 6 1.3416 -2.4142 0.3376 10 6 0.1890 -2.4023 1.1526 11 6 -0.4265 -3.5840 1.4502 12 7 0.0425 -4.7342 0.9998 13 6 1.1215 -4.8069 0.2372 14 8 1.5567 -6.0171 -0.1966 15 6 1.8124 -3.6601 -0.1236 16 35 3.3538 -3.7652 -1.2139 17 1 -0.4850 0.8401 -0.0004 18 1 -0.2036 -1.4703 1.5317 19 1 -1.3114 -3.5791 2.0694 20 1 2.1876 -6.4447 0.3987 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238710351.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:31 Heat of formation + Delta-G solvation = -40.413506 kcal Electronic energy + Delta-G solvation = -10300.416534 eV Core-core repulsion = 8121.361775 eV Total energy + Delta-G solvation = -2179.054759 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.64441 -37.86496 -35.95023 -33.30836 -31.45422 -29.70995 -27.90573 -23.57090 -23.27049 -20.16924 -18.44305 -17.46108 -16.89117 -16.26946 -15.90643 -14.91377 -14.36647 -13.88485 -13.37595 -13.13438 -12.89636 -12.42090 -12.18286 -11.94273 -11.80565 -11.21039 -10.79692 -9.96741 -9.93917 -9.33899 -8.83838 -6.71636 0.51982 0.78128 1.26723 1.39696 1.49850 1.55941 2.15382 2.58392 3.06800 3.46037 4.29114 4.66705 4.76863 5.07848 5.08246 5.30902 5.66936 5.88072 6.29942 6.53579 6.63131 6.88386 7.47042 8.10625 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.013279 C = 0.009359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.623778 B = 2108.162147 C = 2991.090047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.042 3.958 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.255 1.255 7 C -0.454 4.454 8 H 0.095 0.905 9 C 0.124 3.876 10 C -0.227 4.227 11 C 0.106 3.894 12 N -0.602 5.602 13 C 0.340 3.660 14 O -0.488 6.488 15 C -0.283 4.283 16 Br -0.062 7.062 17 H 0.299 0.701 18 H 0.130 0.870 19 H 0.160 0.840 20 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.994 -0.095 0.515 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.483 4.483 8 H 0.113 0.887 9 C 0.115 3.885 10 C -0.250 4.250 11 C -0.041 4.041 12 N -0.328 5.328 13 C 0.159 3.841 14 O -0.297 6.297 15 C -0.368 4.368 16 Br 0.021 6.979 17 H 0.111 0.889 18 H 0.147 0.853 19 H 0.177 0.823 20 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.538 -0.683 -0.148 4.591 hybrid contribution 0.443 1.161 0.298 1.278 sum 4.981 0.478 0.150 5.006 Atomic orbital electron populations 1.69775 1.09215 1.31923 1.31073 1.26910 0.95539 1.04851 0.90539 0.85113 0.79315 0.75119 0.79863 1.18571 1.18379 1.17824 1.20104 0.98557 0.91017 1.38589 0.88658 1.17956 0.91049 0.91588 0.87932 1.22014 1.00349 0.98988 1.03693 1.22001 0.98427 0.86981 0.96723 1.67060 1.16176 1.30762 1.18793 1.18705 0.89807 0.84263 0.91315 1.84664 1.64972 1.31117 1.48906 1.22851 1.02749 0.96536 1.14704 1.96230 1.35325 1.98650 1.67693 0.88925 0.85269 0.82300 0.73592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.40 10.94 21.84 0.24 -37.16 14 2 C 0.04 1.90 5.21 85.29 0.44 2.34 14 3 Si 0.99 34.32 29.59 68.60 2.03 36.35 14 4 H -0.26 -8.90 7.11 99.48 0.71 -8.20 14 5 H -0.26 -8.44 7.11 99.48 0.71 -7.74 14 6 H -0.25 -8.75 7.11 99.48 0.71 -8.05 14 7 C -0.45 -22.44 8.56 23.51 0.20 -22.24 14 8 H 0.10 4.59 6.99 -2.91 -0.02 4.57 14 9 C 0.12 6.36 5.59 -21.10 -0.12 6.24 14 10 C -0.23 -11.18 8.73 22.59 0.20 -10.98 14 11 C 0.11 4.85 11.10 84.25 0.94 5.79 14 12 N -0.60 -28.86 10.36 -310.06 -3.21 -32.07 14 13 C 0.34 16.04 7.74 84.72 0.66 16.70 14 14 O -0.49 -19.71 12.92 -90.39 -1.17 -20.88 14 15 C -0.28 -13.77 6.33 23.04 0.15 -13.62 14 16 Br -0.06 -2.59 31.74 -20.37 -0.65 -3.24 14 17 H 0.30 12.46 8.29 -92.71 -0.77 11.69 14 18 H 0.13 6.34 6.24 -2.91 -0.02 6.32 14 19 H 0.16 6.09 8.06 -2.91 -0.02 6.07 14 20 H 0.41 12.14 9.06 -74.05 -0.67 11.47 14 Total: -1.00 -56.98 208.77 0.32 -56.65 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.62 Total: 16.14 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 2.46 Total: -15.78 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -2.97 Total: -69.23 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.17 Total: -20.88 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Atomic # 35 Polarization: -2.59 SS G_CDS: -0.65 Total: -3.24 kcal Total: -56.98 0.32 -56.65 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238710351.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.241 kcal (2) G-P(sol) polarization free energy of solvation -56.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds