Wall clock time and date at job start Mon Mar 30 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86806 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47088 * 269.99778 * 3 2 1 5 5 H 1.48495 * 109.47381 * 29.99793 * 3 2 1 6 6 H 1.48499 * 109.46810 * 149.99972 * 3 2 1 7 7 C 1.40034 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.41247 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.33746 * 119.80526 * 0.26216 * 9 7 2 11 11 C 1.31779 * 121.45013 * 180.30903 * 10 9 7 12 12 O 1.35622 * 119.54787 * 179.70739 * 11 10 9 13 13 C 1.39595 * 120.90354 * 359.68609 * 11 10 9 14 14 C 1.38613 * 119.52949 * 0.02562 * 13 11 10 15 15 C 1.38482 * 118.64921 * 0.02562 * 14 13 11 16 16 Br 1.89100 * 120.45882 * 179.97438 * 15 14 13 17 17 H 0.96995 * 119.99942 * 0.02562 * 1 2 3 18 18 H 0.96698 * 113.99725 * 269.97666 * 12 11 10 19 19 H 1.08008 * 120.23521 * 180.02562 * 13 11 10 20 20 H 1.08002 * 120.67362 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4403 0.7001 7 6 2.0077 -1.2127 0.0005 8 1 3.0878 -1.2126 0.0010 9 6 1.3015 -2.4360 0.0005 10 7 -0.0359 -2.4315 -0.0053 11 6 -0.7272 -3.5534 0.0006 12 8 -2.0826 -3.5038 0.0003 13 6 -0.0837 -4.7921 0.0066 14 6 1.3016 -4.8423 0.0069 15 6 2.0091 -3.6519 0.0018 16 35 3.9001 -3.6607 0.0027 17 1 -0.4850 0.8400 -0.0004 18 1 -2.4756 -3.4852 0.8837 19 1 -0.6610 -5.7049 0.0110 20 1 1.8185 -5.7906 0.0120 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238710885.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:43 Heat of formation + Delta-G solvation = -32.084397 kcal Electronic energy + Delta-G solvation = -10301.778315 eV Core-core repulsion = 8123.084734 eV Total energy + Delta-G solvation = -2178.693582 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.48510 -37.76707 -35.47913 -32.96266 -32.13332 -29.88159 -27.41913 -23.71897 -23.06510 -19.79618 -18.98297 -17.10405 -16.64005 -16.32813 -15.87461 -14.83492 -14.19757 -13.93941 -13.07965 -12.91800 -12.88723 -12.65411 -12.15461 -11.89739 -11.64032 -11.24649 -10.72380 -10.16501 -9.64242 -9.33048 -8.41848 -6.67849 0.54401 0.93134 1.26227 1.40279 1.50546 1.55676 2.19147 2.65737 3.22818 3.69116 4.27584 4.59007 4.70824 4.96328 5.19078 5.36568 5.50140 5.83462 6.15137 6.45266 6.69153 7.05493 7.92074 8.30423 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.016068 C = 0.008939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.623516 B = 1742.208917 C = 3131.449419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.022 3.978 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.438 4.438 8 H 0.107 0.893 9 C 0.255 3.745 10 N -0.530 5.530 11 C 0.321 3.679 12 O -0.502 6.502 13 C -0.325 4.325 14 C -0.008 4.008 15 C -0.273 4.273 16 Br -0.067 7.067 17 H 0.283 0.717 18 H 0.406 0.594 19 H 0.137 0.863 20 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 -3.308 1.787 5.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.202 4.202 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.468 4.468 8 H 0.125 0.875 9 C 0.130 3.870 10 N -0.253 5.253 11 C 0.133 3.867 12 O -0.311 6.311 13 C -0.350 4.350 14 C -0.034 4.034 15 C -0.356 4.356 16 Br 0.016 6.984 17 H 0.094 0.906 18 H 0.264 0.736 19 H 0.155 0.845 20 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.620 -2.391 1.184 5.335 hybrid contribution -0.157 -0.219 0.438 0.514 sum 4.464 -2.610 1.622 5.419 Atomic orbital electron populations 1.70233 1.09056 1.29746 1.27059 1.27127 0.95714 1.04936 0.92426 0.85144 0.79290 0.75333 0.79766 1.18571 1.18947 1.17357 1.20343 0.95865 0.89781 1.40775 0.87465 1.18488 0.86853 0.92414 0.89239 1.68285 1.07734 1.28422 1.20901 1.19920 0.84292 0.89353 0.93134 1.84591 1.15400 1.96288 1.34779 1.21539 0.94457 0.97410 1.21590 1.21074 0.93299 0.96499 0.92502 1.22559 0.89380 0.96818 1.26887 1.96238 1.04727 1.99032 1.98387 0.90573 0.73550 0.84513 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.14 11.46 21.84 0.25 -38.89 14 2 C 0.02 1.08 5.50 85.29 0.47 1.55 14 3 Si 0.99 36.95 29.56 68.60 2.03 38.98 14 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 14 5 H -0.27 -9.44 7.11 99.48 0.71 -8.73 14 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 14 7 C -0.44 -22.98 8.79 23.45 0.21 -22.77 14 8 H 0.11 5.29 6.36 -2.91 -0.02 5.27 14 9 C 0.25 13.78 6.55 40.19 0.26 14.04 14 10 N -0.53 -29.38 7.88 -302.38 -2.38 -31.77 14 11 C 0.32 15.63 7.74 85.03 0.66 16.29 14 12 O -0.50 -21.28 13.56 -89.35 -1.21 -22.49 14 13 C -0.33 -13.93 10.06 22.69 0.23 -13.70 14 14 C -0.01 -0.34 9.92 22.42 0.22 -0.12 14 15 C -0.27 -12.94 6.30 22.92 0.14 -12.80 14 16 Br -0.07 -2.66 31.90 -20.37 -0.65 -3.31 14 17 H 0.28 13.49 8.29 -92.71 -0.77 12.72 14 18 H 0.41 12.76 9.06 -74.06 -0.67 12.09 14 19 H 0.14 4.95 8.06 -2.91 -0.02 4.92 14 20 H 0.14 4.99 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -61.70 210.36 0.84 -60.86 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.62 Total: 14.13 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 2.19 Total: -17.50 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -2.13 Total: -70.65 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -1.21 Total: -22.49 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 35 Polarization: -2.66 SS G_CDS: -0.65 Total: -3.31 kcal Total: -61.70 0.84 -60.86 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238710885.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.775 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds